mRNA_S-latissima_F_contig104.361.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig104.361.1 vs. uniprot
Match: D8LDI8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDI8_ECTSI) HSP 1 Score: 203 bits (516), Expect = 8.630e-57 Identity = 118/180 (65.56%), Postives = 131/180 (72.78%), Query Frame = 1
Query: 19 FAGSAMVAGHVSRSSTCPLSMAENNAALTKMDEMEKEVAPA--GGGFWFGSAGFWGEEDYRGFVDSYKPDNLINGVYPIIDRVRDTKILTTTPRSYTSISIQSAEITADARAISLIRRAMEEAGLLTFAADNLDVLINLFGFLAIEPAKLAIPAVVSVVKALKGAGLLKIGGDSGAPAAA 552
FAGSA+ S SS+ + MAE+NAAL DE+E+ VAPA GGGFWFGS+GFWGEEDYRGFVD YK DNLINGVYPIIDRVR TKILTTT S ++ A +T L+FAADNLDVLINLFGF+AIEPAKLAIPAVVSVVKALKGAGLLK+GG AP AA
Sbjct: 14 FAGSALSRVSSSSSSSSTIRMAESNAALEAFDELEQSVAPAPPGGGFWFGSSGFWGEEDYRGFVDGYKADNLINGVYPIIDRVRATKILTTTSESGLLSELEDAGLTLSEA--EKXXXXXXXXXXLSFAADNLDVLINLFGFIAIEPAKLAIPAVVSVVKALKGAGLLKLGGGDAAPVAA 191
BLAST of mRNA_S-latissima_F_contig104.361.1 vs. uniprot
Match: A0A835YZH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH4_9STRA) HSP 1 Score: 100 bits (250), Expect = 7.190e-20 Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 1
Query: 172 FWGEEDYRGFVDSYKPDNLINGVYPIIDRVRDTKILTTTPRSYTSISIQSAEITADARAISLIRRAMEEAGLLTFAADNLDVLINLFGFLAIEPAKLAIPAVVSVVKALKGAGLL 516
FWGEE YR +V +YK D L+N VYP++DRVR+ K+LT T +++ A +T +A +L+ A+EEAGLL+FAA+N D L+N FLA+EPA+LA+P VV VVK G GLL
Sbjct: 52 FWGEEGYRTYVATYKGDALVNRVYPVLDRVREKKLLTKTAELGLLGALEDAGLTLS-QAEALLP-AVEEAGLLSFAANNADFLLNTAAFLAVEPAELALPLVVGVVKG--GPGLL 162 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig104.361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig104.361.1 >prot_S-latissima_F_contig104.361.1 ID=prot_S-latissima_F_contig104.361.1|Name=mRNA_S-latissima_F_contig104.361.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=279bp MVAGHVSRSSTCPLSMAENNAALTKMDEMEKEVAPAGGGFWFGSAGFWGEback to top mRNA from alignment at S-latissima_F_contig104:94117..103868+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig104.361.1 ID=mRNA_S-latissima_F_contig104.361.1|Name=mRNA_S-latissima_F_contig104.361.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=9752bp|location=Sequence derived from alignment at S-latissima_F_contig104:94117..103868+ (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig104:94117..103868+ >mRNA_S-latissima_F_contig104.361.1 ID=mRNA_S-latissima_F_contig104.361.1|Name=mRNA_S-latissima_F_contig104.361.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1674bp|location=Sequence derived from alignment at S-latissima_F_contig104:94117..103868+ (Saccharina latissima SLPER63f female)back to top |