mRNA_S-latissima_F_contig1035.324.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1035.324.1
Unique NamemRNA_S-latissima_F_contig1035.324.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1035.324.1 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 5.900e-17
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    4 ASLPRIDVTGLSPYQVAESVDFSRPCILTGVLPSADCEDWCDALMEDL 147
            ASLPRIDVTGLS  QVA+ VDFSRPCILTGVL S DCE WCD L++DL
Sbjct:   82 ASLPRIDVTGLSRAQVADLVDFSRPCILTGVLSSPDCESWCDGLLQDL 129
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1035.324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQI0_ECTSI5.900e-1779.17JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1035contigS-latissima_F_contig1035:148809..148957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue8.3e-14
Seed eggNOG ortholog2880.D8LQI0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2CZ69@1,2S8PH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size151
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815402.4305553-CDS-S-latissima_F_contig1035:148808..1489551622815402.4305553-CDS-S-latissima_F_contig1035:148808..148955Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 148809..148955 +
1693924862.962485-CDS-S-latissima_F_contig1035:148808..1489551693924862.962485-CDS-S-latissima_F_contig1035:148808..148955Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 148809..148955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1035.324.1prot_S-latissima_F_contig1035.324.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1035 148809..148955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1035.324.1

>prot_S-latissima_F_contig1035.324.1 ID=prot_S-latissima_F_contig1035.324.1|Name=mRNA_S-latissima_F_contig1035.324.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=49bp
AASLPRIDVTGLSPYQVAESVDFSRPCILTGVLPSADCEDWCDALMEDL
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mRNA from alignment at S-latissima_F_contig1035:148809..148957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1035.324.1 ID=mRNA_S-latissima_F_contig1035.324.1|Name=mRNA_S-latissima_F_contig1035.324.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=149bp|location=Sequence derived from alignment at S-latissima_F_contig1035:148809..148957+ (Saccharina latissima SLPER63f female)
GCAGCGTCCCTGCCACGAATCGATGTCACCGGGCTCTCACCGTATCAAGT
CGCTGAGTCGGTCGACTTTTCTCGGCCTTGCATATTGACCGGGGTGCTGC
CCTCGGCCGACTGTGAGGACTGGTGCGACGCGCTTATGGAGGACTTGGG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1035:148809..148957+

>mRNA_S-latissima_F_contig1035.324.1 ID=mRNA_S-latissima_F_contig1035.324.1|Name=mRNA_S-latissima_F_contig1035.324.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=294bp|location=Sequence derived from alignment at S-latissima_F_contig1035:148809..148957+ (Saccharina latissima SLPER63f female)
GCAGCGTCCCTGCCACGAATCGATGTCACCGGGCTCTCACCGTATCAAGT
CGCTGAGTCGGTCGACTTTTCTCGGCCTTGCATATTGACCGGGGTGCTGC
CCTCGGCCGACTGTGAGGACTGGTGCGACGCGCTTATGGAGGACTTGGCA
GCGTCCCTGCCACGAATCGATGTCACCGGGCTCTCACCGTATCAAGTCGC
TGAGTCGGTCGACTTTTCTCGGCCTTGCATATTGACCGGGGTGCTGCCCT
CGGCCGACTGTGAGGACTGGTGCGACGCGCTTATGGAGGACTTG
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