mRNA_S-latissima_F_contig1034.307.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1034.307.1
Unique NamemRNA_S-latissima_F_contig1034.307.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.300e-39
Identity = 90/120 (75.00%), Postives = 100/120 (83.33%), Query Frame = 1
Query:   31 EREARTARMLAALDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVALFVANTTA 390
            E EAR ARM++ALDAAEEDLRS+AVP+RARGVVTLTRL+RATL+ G+     XXXXXXX  VNMDTAV +RL+DTY RM GD DSYVYLAAVQGLAALADALPGW IPRLV +F A   A
Sbjct: 1086 EEEARAARMMSALDAAEEDLRSEAVPLRARGVVTLTRLMRATLD-GSPSGGXXXXXXXXXRVNMDTAVAERLIDTYTRMTGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTATAAA 1204          
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.170e-29
Identity = 79/154 (51.30%), Postives = 89/154 (57.79%), Query Frame = 1
Query:   40 ARTARMLAALDAAEEDLRSDAVPMRARG-----------------------------------------VVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVALFVA 378
            AR ARM++ALDAAEEDLRS+AVP+RA+G                                         V  + RL+RATL+ G S             VNMDTAV +RLMDTYARMAGD DSYVYLAAVQGLAALADALPGW IPRLV +F A
Sbjct: 1061 ARAARMMSALDAAEEDLRSEAVPLRAQGGGDAHKSLYCAVLLELLLELVMQENADEKPQRPDFVNLFHTVEPIHRLMRATLDGGPSGGRGGGGR-----VNMDTAVAERLMDTYARMAGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTA 1209          
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.070e-15
Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    7 GGGDGGVAEREARTARMLAALDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVALF 372
            GGGD   +  E    RM AAL   +EDL S  VP+RARGVVTLTRLLR      T  +S            +D  V  + +D Y  MA D +SYVYLAAVQGL+ L+D  PG+ IP LV++F
Sbjct:  794 GGGDSAASLEE----RMAAALVDVQEDLSSAQVPLRARGVVTLTRLLRELTAESTRVAS------------LD--VLDKFVDIYVLMAQDEESYVYLAAVQGLSVLSDVSPGYVIPTLVSIF 897          
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A5D6Y2F3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2F3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.860e-9
Identity = 47/103 (45.63%), Postives = 58/103 (56.31%), Query Frame = 1
Query:   67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVT---QRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVA 366
            L  A+ DL+S  VP+RARGVVTLT+L+RA+ +                    D A T   QRL+  +     D +SYV+LAAVQGLAALADA     IP LVA
Sbjct:  747 LSDAQTDLKSTLVPLRARGVVTLTKLVRASQQQ-----------------RCDPAWTPRVQRLVGLFLAHLDDPESYVFLAAVQGLAALADAHADVAIPLLVA 832          
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: D0MTC1_PHYIT (RTP1_C1 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTC1_PHYIT)

HSP 1 Score: 64.7 bits (156), Expect = 3.860e-9
Identity = 44/96 (45.83%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   76 AEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
            AE+DL S  VP+RARGVVTLTRL+R +L                      T     L   +     D++SYV+LAAVQGLAALADA P   IP LV
Sbjct:  664 AEQDLSSQLVPLRARGVVTLTRLVRRSLSHAHEAEW--------------TPRVHSLAQVFLLHLHDSESYVFLAAVQGLAALADAHPAAAIPALV 745          
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A024GRC6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRC6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.960e-9
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   55 MLAALDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
             +  L++A+ DL S+ VP+RARG+V+LT+L+R+ +    ++               DT + Q L+  Y     D +SYVYLAA+QGLA LADA P   IP LV
Sbjct: 1017 FICRLNSAKLDLESNLVPLRARGIVSLTKLVRSCVRREQTQEWIE---------TWDTRIRQ-LLAIYIDHLSDEESYVYLAAIQGLATLADAYPKLAIPLLV 1109          
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A329SR12_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SR12_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.300e-9
Identity = 46/99 (46.46%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
            L  AE+DL S  VP+RARGVVTLT+L+R        RS S             T     L   +     D++SYVYLAAVQGLAALADA P   +P LV
Sbjct:  762 LREAEQDLSSQLVPLRARGVVTLTKLVR--------RSHSHVHDAEW------TPRVHALAQVFLLHLHDSESYVYLAAVQGLAALADAHPNVAVPALV 846          
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A0P1AB77_PLAHL (Syntaxin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB77_PLAHL)

HSP 1 Score: 63.9 bits (154), Expect = 7.360e-9
Identity = 49/102 (48.04%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQR---LMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
            L +AE+D  S  VP+RARGVVTLT+L+R        RS            N DT  T R   L   +     D++SYVYLAAVQGLAALADA P   IP LV
Sbjct: 1061 LQSAEQDFLSKLVPLRARGVVTLTKLVR--------RSHMH---------NHDTEWTPRVHALARVFLLKLHDSESYVYLAAVQGLAALADAHPDVAIPVLV 1145          
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A8J5MIN4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MIN4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.820e-8
Identity = 46/99 (46.46%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
            L  AE+DL    VP+RARGVVTLT+L+R        RS S             T     L   +     D++SYVYLAAVQGLAALADA P   IP LV
Sbjct:  834 LHEAEQDLSCQLVPLRARGVVTLTKLVR--------RSHSHVHDAEW------TPRVHALAQVFLLHLHDSESYVYLAAVQGLAALADAHPDVAIPALV 918          
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: G4ZD77_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZD77_PHYSP)

HSP 1 Score: 61.6 bits (148), Expect = 4.510e-8
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVALFVANTTA 390
            L  AE+DL S+ VP+RARGVVTLT+L+R        RS +             T     L   +     D++SYV+LAAVQGLAALADA P   IP LV   + ++ +
Sbjct:  660 LREAEQDLSSELVPLRARGVVTLTKLVR--------RSHAHAHDAEW------TPRVHALARVFLLHLYDSESYVFLAAVQGLAALADAHPDVAIPALVKALLDSSNS 753          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JPL2_9PHAE1.300e-3975.00RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FHX3_ECTSI1.170e-2951.30RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YW23_9STRA1.070e-1547.54RTP1_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A5D6Y2F3_9STRA2.860e-945.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D0MTC1_PHYIT3.860e-945.83RTP1_C1 domain-containing protein n=2 Tax=Phytopht... [more]
A0A024GRC6_9STRA3.960e-940.78t-SNARE coiled-coil homology domain-containing pro... [more]
A0A329SR12_9STRA5.300e-946.46Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A0P1AB77_PLAHL7.360e-948.04Syntaxin-like protein n=1 Tax=Plasmopara halstedii... [more]
A0A8J5MIN4_9STRA1.820e-846.46Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G4ZD77_PHYSP4.510e-841.67Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1034contigS-latissima_F_contig1034:96021..97085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue4.8e-26
Seed eggNOG ortholog2880.D7FHX3
Preferred nameTANGO6
KEGG rclassRC00961
KEGG koko:K01763,ko:K08489
KEGG ReactionR03599
KEGG Pathwayko00450,ko01100,ko04130,map00450,map01100,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0032940,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594
EggNOG free text desc.protein transport
EggNOG OGsKOG4653@1,KOG4653@2759
EC4.4.1.16
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons2
Model size481
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815400.0604095-CDS-S-latissima_F_contig1034:96021..963611622815400.0604095-CDS-S-latissima_F_contig1034:96021..96361Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1034 96022..96361 -
1693924861.5486977-CDS-S-latissima_F_contig1034:96021..963611693924861.5486977-CDS-S-latissima_F_contig1034:96021..96361Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1034 96022..96361 -
1622815400.0738137-CDS-S-latissima_F_contig1034:96945..970851622815400.0738137-CDS-S-latissima_F_contig1034:96945..97085Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1034 96946..97085 -
1693924861.5612373-CDS-S-latissima_F_contig1034:96945..970851693924861.5612373-CDS-S-latissima_F_contig1034:96945..97085Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1034 96946..97085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1034.307.1prot_S-latissima_F_contig1034.307.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1034 96022..97085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1034.307.1

>prot_S-latissima_F_contig1034.307.1 ID=prot_S-latissima_F_contig1034.307.1|Name=mRNA_S-latissima_F_contig1034.307.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=160bp
GRGGGDGGVAEREARTARMLAALDAAEEDLRSDAVPMRARGVVTLTRLLR
ATLESGTSRSSSGGGSGGGAGVNMDTAVTQRLMDTYARMAGDTDSYVYLA
AVQGLAALADALPGWCIPRLVALFVANTTATATATTTATATATATAAGNA
TTTATAAEST
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mRNA from alignment at S-latissima_F_contig1034:96021..97085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1034.307.1 ID=mRNA_S-latissima_F_contig1034.307.1|Name=mRNA_S-latissima_F_contig1034.307.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1065bp|location=Sequence derived from alignment at S-latissima_F_contig1034:96021..97085- (Saccharina latissima SLPER63f female)
GGCAGGGGCGGGGGTGACGGGGGAGTCGCAGAGAGGGAAGCTCGGACGGC GAGGATGTTGGCGGCTTTGGACGCGGCCGAGGAGGACTTGAGGAGCGACG CGGTGCCGATGCGTGCGAGGGGGGTCGTGACGCTGACAAGGTGATGTCAT GAGCTCCTGTAAGCGGGTGGTGTGGGGGTATATGGGTGGTAAGGCGTGCG TGAAGGCGGGCGGGCGGGGGGGGAGGGAGGGGTTAGTGTTTTTGGTAAAG AGTCAATTCGTCGCACCCCGTCAAGCATCAAGCGTGCTACCATACCCCGT GTGTCTGTCTGTCTTGTCTTCCCGTGTGTCTCGTCTGTCTTGTCTTTCTG TTGGTCTGTCTGTCTGTTTGTCTGTCTGCATGTCTGTGCATGGCTGTCTG TCTGTCTGTCCGTGTGTCTGCCTTCCTGTCTGTTTGTCTGTCTGTCTGTC TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG TCTGTCTGTCTGTCTGCCTGCCTGTCTGGCTGGCTGTCTGGCTGTCTGGC TGTCTGGCTGTCTGTCTGTCTGTCTGTCGTCGGTCTGTCTGCCTGTCGGT TTATCTGCCTTACATCAGAATGATACATTGCGCGCAATAATTCCCTGTGT TAATCCCACCCCTGCGTCAACCGTCTGCCCGTAACACCTTTCTACACCCT TTTCCCCGGACTGCCAAACGTCAGGCTGTTGCGAGCAACCTTGGAGAGCG GGACAAGCCGGAGTAGTAGCGGCGGCGGCAGTGGTGGCGGGGCTGGCGTC AACATGGACACGGCGGTCACCCAGCGCCTGATGGACACTTACGCGAGAAT GGCGGGCGACACCGACTCGTACGTCTACCTCGCCGCGGTGCAGGGGCTTG CCGCGCTCGCCGACGCGCTCCCGGGCTGGTGCATCCCTCGTCTCGTAGCT CTCTTCGTCGCCAACACTACCGCCACTGCTACCGCTACTACTACCGCTAC TGCTACCGCTACTGCTACCGCTGCTGGTAATGCTACCACTACTGCTACCG CTGCCGAGTCGACGT
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Coding sequence (CDS) from alignment at S-latissima_F_contig1034:96021..97085-

>mRNA_S-latissima_F_contig1034.307.1 ID=mRNA_S-latissima_F_contig1034.307.1|Name=mRNA_S-latissima_F_contig1034.307.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=960bp|location=Sequence derived from alignment at S-latissima_F_contig1034:96021..97085- (Saccharina latissima SLPER63f female)
GGCAGGGGCGGGGGTGACGGGGGAGTCGCAGAGAGGGAAGCTCGGACGGC
GAGGATGTTGGCGGCTTTGGACGCGGCCGAGGAGGACTTGAGGAGCGACG
CGGTGCCGATGCGTGCGAGGGGGGTCGTGACGCTGACAAGGGCAGGGGCG
GGGGTGACGGGGGAGTCGCAGAGAGGGAAGCTCGGACGGCGAGGATGTTG
GCGGCTTTGGACGCGGCCGAGGAGGACTTGAGGAGCGACGCGGTGCCGAT
GCGTGCGAGGGGGGTCGTGACGCTGACAAGGCTGTTGCGAGCAACCTTGG
AGAGCGGGACAAGCCGGAGTAGTAGCGGCGGCGGCAGTGGTGGCGGGGCT
GGCGTCAACATGGACACGGCGGTCACCCAGCGCCTGATGGACACTTACGC
GAGAATGGCGGGCGACACCGACTCGTACGTCTACCTCGCCGCGGTGCAGG
GGCTTGCCGCGCTCGCCGACGCGCTCCCGGGCTGGTGCATCCCTCGTCTC
GTAGCTCTCTTCGTCGCCAACACTACCGCCACTGCTACCGCTACTACTAC
CGCTACTGCTACCGCTACTGCTACCGCTGCTGGTAATGCTACCACTACTG
CTACCGCTGCCGAGTCGACGGCTGTTGCGAGCAACCTTGGAGAGCGGGAC
AAGCCGGAGTAGTAGCGGCGGCGGCAGTGGTGGCGGGGCTGGCGTCAACA
TGGACACGGCGGTCACCCAGCGCCTGATGGACACTTACGCGAGAATGGCG
GGCGACACCGACTCGTACGTCTACCTCGCCGCGGTGCAGGGGCTTGCCGC
GCTCGCCGACGCGCTCCCGGGCTGGTGCATCCCTCGTCTCGTAGCTCTCT
TCGTCGCCAACACTACCGCCACTGCTACCGCTACTACTACCGCTACTGCT
ACCGCTACTGCTACCGCTGCTGGTAATGCTACCACTACTGCTACCGCTGC
CGAGTCGACG
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