mRNA_S-latissima_F_contig1034.307.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.300e-39 Identity = 90/120 (75.00%), Postives = 100/120 (83.33%), Query Frame = 1
Query: 31 EREARTARMLAALDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVALFVANTTA 390
E EAR ARM++ALDAAEEDLRS+AVP+RARGVVTLTRL+RATL+ G+ XXXXXXX VNMDTAV +RL+DTY RM GD DSYVYLAAVQGLAALADALPGW IPRLV +F A A
Sbjct: 1086 EEEARAARMMSALDAAEEDLRSEAVPLRARGVVTLTRLMRATLD-GSPSGGXXXXXXXXXRVNMDTAVAERLIDTYTRMTGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTATAAA 1204
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI) HSP 1 Score: 123 bits (309), Expect = 1.170e-29 Identity = 79/154 (51.30%), Postives = 89/154 (57.79%), Query Frame = 1
Query: 40 ARTARMLAALDAAEEDLRSDAVPMRARG-----------------------------------------VVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVALFVA 378
AR ARM++ALDAAEEDLRS+AVP+RA+G V + RL+RATL+ G S VNMDTAV +RLMDTYARMAGD DSYVYLAAVQGLAALADALPGW IPRLV +F A
Sbjct: 1061 ARAARMMSALDAAEEDLRSEAVPLRAQGGGDAHKSLYCAVLLELLLELVMQENADEKPQRPDFVNLFHTVEPIHRLMRATLDGGPSGGRGGGGR-----VNMDTAVAERLMDTYARMAGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTA 1209
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.070e-15 Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 1
Query: 7 GGGDGGVAEREARTARMLAALDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVALF 372
GGGD + E RM AAL +EDL S VP+RARGVVTLTRLLR T +S +D V + +D Y MA D +SYVYLAAVQGL+ L+D PG+ IP LV++F
Sbjct: 794 GGGDSAASLEE----RMAAALVDVQEDLSSAQVPLRARGVVTLTRLLRELTAESTRVAS------------LD--VLDKFVDIYVLMAQDEESYVYLAAVQGLSVLSDVSPGYVIPTLVSIF 897
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A5D6Y2F3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2F3_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.860e-9 Identity = 47/103 (45.63%), Postives = 58/103 (56.31%), Query Frame = 1
Query: 67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVT---QRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVA 366
L A+ DL+S VP+RARGVVTLT+L+RA+ + D A T QRL+ + D +SYV+LAAVQGLAALADA IP LVA
Sbjct: 747 LSDAQTDLKSTLVPLRARGVVTLTKLVRASQQQ-----------------RCDPAWTPRVQRLVGLFLAHLDDPESYVFLAAVQGLAALADAHADVAIPLLVA 832
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: D0MTC1_PHYIT (RTP1_C1 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTC1_PHYIT) HSP 1 Score: 64.7 bits (156), Expect = 3.860e-9 Identity = 44/96 (45.83%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 76 AEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
AE+DL S VP+RARGVVTLTRL+R +L T L + D++SYV+LAAVQGLAALADA P IP LV
Sbjct: 664 AEQDLSSQLVPLRARGVVTLTRLVRRSLSHAHEAEW--------------TPRVHSLAQVFLLHLHDSESYVFLAAVQGLAALADAHPAAAIPALV 745
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A024GRC6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRC6_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 3.960e-9 Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query: 55 MLAALDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
+ L++A+ DL S+ VP+RARG+V+LT+L+R+ + ++ DT + Q L+ Y D +SYVYLAA+QGLA LADA P IP LV
Sbjct: 1017 FICRLNSAKLDLESNLVPLRARGIVSLTKLVRSCVRREQTQEWIE---------TWDTRIRQ-LLAIYIDHLSDEESYVYLAAIQGLATLADAYPKLAIPLLV 1109
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A329SR12_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SR12_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 5.300e-9 Identity = 46/99 (46.46%), Postives = 54/99 (54.55%), Query Frame = 1
Query: 67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
L AE+DL S VP+RARGVVTLT+L+R RS S T L + D++SYVYLAAVQGLAALADA P +P LV
Sbjct: 762 LREAEQDLSSQLVPLRARGVVTLTKLVR--------RSHSHVHDAEW------TPRVHALAQVFLLHLHDSESYVYLAAVQGLAALADAHPNVAVPALV 846
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A0P1AB77_PLAHL (Syntaxin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB77_PLAHL) HSP 1 Score: 63.9 bits (154), Expect = 7.360e-9 Identity = 49/102 (48.04%), Postives = 57/102 (55.88%), Query Frame = 1
Query: 67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQR---LMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
L +AE+D S VP+RARGVVTLT+L+R RS N DT T R L + D++SYVYLAAVQGLAALADA P IP LV
Sbjct: 1061 LQSAEQDFLSKLVPLRARGVVTLTKLVR--------RSHMH---------NHDTEWTPRVHALARVFLLKLHDSESYVYLAAVQGLAALADAHPDVAIPVLV 1145
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: A0A8J5MIN4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MIN4_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.820e-8 Identity = 46/99 (46.46%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLV 363
L AE+DL VP+RARGVVTLT+L+R RS S T L + D++SYVYLAAVQGLAALADA P IP LV
Sbjct: 834 LHEAEQDLSCQLVPLRARGVVTLTKLVR--------RSHSHVHDAEW------TPRVHALAQVFLLHLHDSESYVYLAAVQGLAALADAHPDVAIPALV 918
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Match: G4ZD77_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZD77_PHYSP) HSP 1 Score: 61.6 bits (148), Expect = 4.510e-8 Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 67 LDAAEEDLRSDAVPMRARGVVTLTRLLRATLESGTSRSSSXXXXXXXAGVNMDTAVTQRLMDTYARMAGDTDSYVYLAAVQGLAALADALPGWCIPRLVALFVANTTA 390
L AE+DL S+ VP+RARGVVTLT+L+R RS + T L + D++SYV+LAAVQGLAALADA P IP LV + ++ +
Sbjct: 660 LREAEQDLSSELVPLRARGVVTLTKLVR--------RSHAHAHDAEW------TPRVHALARVFLLHLYDSESYVFLAAVQGLAALADAHPDVAIPALVKALLDSSNS 753 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1034.307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1034.307.1 >prot_S-latissima_F_contig1034.307.1 ID=prot_S-latissima_F_contig1034.307.1|Name=mRNA_S-latissima_F_contig1034.307.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=160bp GRGGGDGGVAEREARTARMLAALDAAEEDLRSDAVPMRARGVVTLTRLLRback to top mRNA from alignment at S-latissima_F_contig1034:96021..97085- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1034.307.1 ID=mRNA_S-latissima_F_contig1034.307.1|Name=mRNA_S-latissima_F_contig1034.307.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1065bp|location=Sequence derived from alignment at S-latissima_F_contig1034:96021..97085- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1034:96021..97085- >mRNA_S-latissima_F_contig1034.307.1 ID=mRNA_S-latissima_F_contig1034.307.1|Name=mRNA_S-latissima_F_contig1034.307.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=960bp|location=Sequence derived from alignment at S-latissima_F_contig1034:96021..97085- (Saccharina latissima SLPER63f female)back to top |