mRNA_S-latissima_F_contig1032.289.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1032.289.1
Unique NamemRNA_S-latissima_F_contig1032.289.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1032.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1032contigS-latissima_F_contig1032:22321..23467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815398.043769-CDS-S-latissima_F_contig1032:22320..223761622815398.043769-CDS-S-latissima_F_contig1032:22320..22376Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1032 22321..22376 -
1693924860.4434774-CDS-S-latissima_F_contig1032:22320..223761693924860.4434774-CDS-S-latissima_F_contig1032:22320..22376Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1032 22321..22376 -
1622815398.150108-CDS-S-latissima_F_contig1032:23214..234671622815398.150108-CDS-S-latissima_F_contig1032:23214..23467Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1032 23215..23467 -
1693924860.453326-CDS-S-latissima_F_contig1032:23214..234671693924860.453326-CDS-S-latissima_F_contig1032:23214..23467Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1032 23215..23467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1032.289.1prot_S-latissima_F_contig1032.289.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1032 22321..23467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1032.289.1

>prot_S-latissima_F_contig1032.289.1 ID=prot_S-latissima_F_contig1032.289.1|Name=mRNA_S-latissima_F_contig1032.289.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=103bp
RQRLNPSSSPDTRLSNFKIRATLVSLSATPSAHKTRAPNSNQHGRAQSRS
TSLQGFPEDISPEASFVKLSDLLRPALPTNGRFERLCCARLISRWGSKST
WR*
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mRNA from alignment at S-latissima_F_contig1032:22321..23467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1032.289.1 ID=mRNA_S-latissima_F_contig1032.289.1|Name=mRNA_S-latissima_F_contig1032.289.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1147bp|location=Sequence derived from alignment at S-latissima_F_contig1032:22321..23467- (Saccharina latissima SLPER63f female)
AGACAACGATTGAACCCCTCCAGTTCTCCAGACACGCGGCTCTCGAACTT
CAAAATACGTGCGACCCTGGTGTCCTTGTCCGCTACACCCTCTGCGCACA
AGACACGTGCACCCAACTCTAACCAGCACGGCAGAGCTCAGAGTAGATCA
ACGTCGCTGCAAGGTTTTCCGGAGGACATTTCGCCTGAGGCTAGCTTCGT
GAAGCTCTCCGACCTGCTCCGGCCAGCTCTCCCAACGAACGGACGCTTTG
AACGTGAGTATGATCTGATATGTACCTACCAGGCTTTTTTGCTTTCATTT
CAAGGCACTTGTAGCAAGTCACTCGTACGAGTAGCGCGGCGGCGTCACAC
CGCTTACCGAGCCACAGGGAGTTGCCCAGCGCTGGCCAAGGGAGCGCGGA
TGCCTGGCACCTTTCACTCTGTAGCTAGTGCTGTTATAATATGTACGTAC
TGGTACCTTGACGCTACGTGGCTGGTACCAGGTACGGCAAAACCACCTGT
ACAGCAGTACAGGACGCCTAAAATAAGAAACAGGAAAGCAGGAAAGCTGG
CCCAGGCTCGATTTCTTATTTGAGATAGGGTGCTTTCCACACCAATTTCA
AGATAACGACTCTCAAATTTCTTATTTTCCTCCAATCTCAGCCTGGCTTT
TTGTTAAGCCTGTTGTTGGGTGTCCTGTCCTGTCGTGTACTGTATGTACG
TACGTACGTTGTACATACCTGGGGTAGTATCGTGGCCATATGAGAACTCG
ACCGGTACGTACCAGTACTGTACGTGATATCATATATACCAGGTACCGGT
ATATTACGAGTGCTTGTGCAAAACGCCGCGCCGTCGCTTCAACCTCGCGC
CGAACAGCTGTACAGCGTCATTTACCAATAAGTGATTTACAGCAGCAGCA
ATGCAGCTATTACTGCATCTATACGTACAGCAGCGCTACAGCAGAGTAAT
CAAGGTTGCAACGCAACATCAGTGCATAGAGGCAGGCCGGGCAACGGCAC
GAGTAGTACTGCTGTGTAGTGGATGGTATCGAAGCTGGCAGAGGTGGACA
CCAACACCGTTTTTGTTGATGCTGCTTCTGCTCTTACGCAGGTCTGTGTT
GCGCGAGGTTGATATCGAGATGGGGATCCAAATCAACCTGGCGATAG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1032:22321..23467-

>mRNA_S-latissima_F_contig1032.289.1 ID=mRNA_S-latissima_F_contig1032.289.1|Name=mRNA_S-latissima_F_contig1032.289.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=618bp|location=Sequence derived from alignment at S-latissima_F_contig1032:22321..23467- (Saccharina latissima SLPER63f female)
AGACAACGATTGAACCCCTCCAGTTCTCCAGACACGCGGCTCTCGAACTT
CAAAATACGTGCGACCCTGGTGTCCTTGTCCGCTACACCCTCTGCGCACA
AGACACGTGCACCCAACTCTAACCAGCACGGCAGAGCTCAGAGTAGATCA
ACGTCGCTGCAAGGTTTTCCGGAGGACATTTCGCCTGAGGCTAGCTTCGT
GAAGCTCTCCGACCTGCTCCGGCCAGCTCTCCCAACGAACGGACGCTTTG
AACAGACAACGATTGAACCCCTCCAGTTCTCCAGACACGCGGCTCTCGAA
CTTCAAAATACGTGCGACCCTGGTGTCCTTGTCCGCTACACCCTCTGCGC
ACAAGACACGTGCACCCAACTCTAACCAGCACGGCAGAGCTCAGAGTAGA
TCAACGTCGCTGCAAGGTTTTCCGGAGGACATTTCGCCTGAGGCTAGCTT
CGTGAAGCTCTCCGACCTGCTCCGGCCAGCTCTCCCAACGAACGGACGCT
TTGAACGTCTGTGTTGCGCGAGGTTGATATCGAGATGGGGATCCAAATCA
ACCTGGCGATAGGTCTGTGTTGCGCGAGGTTGATATCGAGATGGGGATCC
AAATCAACCTGGCGATAG
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