mRNA_S-latissima_F_contig1022.200.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1022.200.1
Unique NamemRNA_S-latissima_F_contig1022.200.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: A0A6H5KTC0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC0_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.230e-66
Identity = 269/621 (43.32%), Postives = 306/621 (49.28%), Query Frame = 2 
Query:  125 IQNRQQDKIRDLLEVRGVGANFANDRGVRPMHIACQTGDMRLVQRLLELGADIITADKAGNTPLHYASKGGYTEMVKMLVGQGAAVEKRNGSRLTAYDVATDHVVRQYLLPLQLRAEAGNPDYAVHTMGITSDT-PRNYEQYGVPGQPNALHGQPHGAHTAAS------AGPDRMSTALGALMQAPTFDP--PRPGAAGMAPPT-------------VYPGGAGGAPPMQR-GSNSPPLPGSSGVGFADPSAALPPPPAMGMGALPXXXXXXXXXXXXXXXXXPVKFXXXXXA-----------ASGAAPPALPSTTAPVSSXXXXXXXXXXXXXXXXXPGDVSSQAQSSSPVVAAANFSPEIAGRTFPGTGSQVESPXXXXXXXXXXXXXXXXXXXXAMMEPVSTGLYFPEEETPASTESVTVAGGAREATPPNSGVSTAVGGQPFSVVPVHVQQEEPDATEESLRPGS-----ASVLGGD----PVMTNVDLSSTFQGQATISGG-------EGSFQAGGMGAALPPPXXAHPSSAPS--SGRGAPPPS--RPPGAYTPGPGPHQPASEQPGK-FKPIKPDGFHSSASDKALQRRYGHTKIVRDMGAPPTAAQLGGPQG 1822
            IQNRQQDKIR+LLEV+GVGAN ANDRGVRPMH+ACQTG+  LVQRLLELGADII                             A VE+RN  RLTAYDVATDHV+RQ+LLPLQL+AEAGNPDYAV+TMGITSD  PR+YE +GVPG  +                     G   M  ALGALMQAPT  P  PRPGA    PP              VYP G  G P  Q+ GS SPP  G     +  P  A PP      G+LP XXXXXXXXXXXXXXXX    XXXXX            A G    A P+                         GD++      +   AAA   P    R+FPG   Q+ + XXXXXXXXXXXX                        +PA+                         G+ FS          P   +ESLRPG+     +S   GD    P+M+ VDLSS FQ Q  +SG        EGSF  G      P  XX    S P+  +   APPPS                P +EQ GK FK IKPDGFHSSASDK LQ RYGHTKIV++ GAPPTAAQLGG +G
Sbjct:   28 IQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSYRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPRSYEHHGVPGMGSXXXXXXXXXXXXXXXXXXXXGGASSMDAALGALMQAPTMVPLAPRPGAGMAGPPPMXXXXXXXXXXXXVYPPGPAGFPGAQQPGSYSPPGEGXXXXXYPAPPGASPP---AATGSLPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGKTEVASPAPK-----------------------GDLAGTGPPDAAAAAAATGGP----RSFPGVAVQLAAXXXXXXXXXXXXX------------------------SPAAAPKA---------------------GEDFS--------GRPPFEDESLRPGAEAKANSSSSPGDGPSSPLMSTVDLSSKFQAQVAVSGAGAGAAAVEGSFVGGXXXXXXPVXXXXXHGSEPNCATAGAAPPPSVXXXXXXXXXXXXXXXPPAEQTGKKFKLIKPDGFHSSASDKVLQARYGHTKIVKEFGAPPTAAQLGGAKG 565
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: D7FP01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP01_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.830e-36
Identity = 76/115 (66.09%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  125 IQNRQQDKIRDLLEVRGVGANFANDRGVRPMHIACQTGDMRLVQRLLELGADIITADKAGNTPLHYASKGGYTEMVKMLVGQGAAVEKRNGSRLTAYDVATDHVVRQYLLPLQLR 469
            IQNRQQDKIR+LLEV+GVGAN ANDRGVRPMH+ACQTG+  LVQRLLELGADIIT                          QGAAVE+RN  RLTAYDVATDHV+RQ+LLPLQL+
Sbjct:   28 IQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLK 142
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: A0A835YRJ6_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.280e-20
Identity = 61/149 (40.94%), Postives = 78/149 (52.35%), Query Frame = 2 
Query:   59 NFCFRVRWGR*WRP---PVQRRVCRIQNRQQDKIRDLLEVRGVGANFANDRGVRPMHIACQTGDMRLVQRLLELGADIITADKAGNTPLHYASKGGYTEMVKMLVGQGAAVEKRNGSRLTAYDVATDHVVRQYLLPLQLRAEAGNPDYA 496
            NF F+   G    P   P Q+ +  IQNRQ DK + ++ +     N A D GV P+H+ACQ G   L++RL ELG D+  AD                            V+ RN SR + YD+AT+HVVRQYLLPLQL+AEA NP  A
Sbjct:    3 NFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSA 151
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: W7TGZ7_9STRA (Serine threonine-protein phosphatase 6 regulatory n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGZ7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.830e-20
Identity = 67/148 (45.27%), Postives = 86/148 (58.11%), Query Frame = 2 
Query:  101 PVQRRVCRIQNRQQDKIRDLLEVRGVGANFANDRG---VRPMHIACQTGDMRLVQRLLELGADIITA-DKAGNTPLHYASKGGYTEMVKMLVGQGAAVEKRNGSRLTAYDVATDHVVRQYLLPLQLRAE---AGNPDYAVHTMGITSD 523
            P Q+    I+  + DK   LL+  GV  N A D G     P+H ACQ G+  ++ +L+E+GAD  +A D+ GN  LH A+KGG  E VK L+  G  V +RN  R TAYDVA  H+VRQ+LLPLQLRAE   A     AVH   +  D
Sbjct:   41 PHQQLHQAIEEHRHDKANQLLQ-EGVYFN-APDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAEPEPAAGSLAAVHNPDVIRD 186
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: A0A4D9DC57_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC57_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.400e-20
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 2 
Query:  101 PVQRRVCRIQNRQQDKIRDLLEVRGVGANFANDRG---VRPMHIACQTGDMRLVQRLLELGADIITA-DKAGNTPLHYASKGGYTEMVKMLVGQGAAVEKRNGSRLTAYDVATDHVVRQYLLPLQLRAE---AGNPDYAVHTMGITSD 523
            P Q+    I+  + DK   LL+  GV  N A D G     P+H ACQ G+  ++ +L+E+GAD+ +A D+ GN  LH A+KGG  E VK L+  G  V +RN  R TAYDVA  H+VRQ+LLPLQLR E   A     AVH   +  D
Sbjct:   20 PHQQLHQAIEEHRHDKANQLLQ-EGVYFN-APDAGRGDALPIHTACQAGNQMMIDKLMEMGADVRSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRTEPEPAAGTLAAVHNPDVIRD 165
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: A0A7S3JRB0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRB0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.530e-13
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 2 
Query:  125 IQNRQQDKIRDLLE---VRGVGANFANDRGVRPMHIACQTGDMRLVQRLLELGADIITAD-KAGNTPLHYASKGGYTEMVKMLVGQGAAVEKRNGSRLTAYDVATDHVVRQYLLPLQLRAEA 478
            I+ R   +  +LL    V  +G N + D  + P+H+AC    ++ V+ LL  GAD+   D +A  TPLH+ ++GG++ + ++LV +GA++  RN    T YDVA D  +RQ+LLPLQLRAEA
Sbjct:   34 IRRRDWPRTHELLSSPNVDALGKNGSVD--MTPLHVACAEDFVQCVEYLLVNGADVNVRDTRAHETPLHHGARGGHSRVCRLLVERGASLVARNARNQTPYDVAKDLSLRQWLLPLQLRAEA 153
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: A0A7R9U2B4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2B4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.170e-10
Identity = 42/90 (46.67%), Postives = 51/90 (56.67%), Query Frame = 2 
Query:  302 GNTPLHYASKGGYTEMVKMLVGQGAAVEKRNGSRLTAYDVATDHVVRQYLLPLQLRAEAGNPDYAVHTMGITSDTPRNYEQYGVPGQPNA 571
            GNTPLHYA +GG  +MVK ++G+   V  RNG+  T YD A  HVVRQYLLP+QLR E          + +   TP  Y  Y V   P A
Sbjct:   87 GNTPLHYACEGGSLDMVKHILGKQVDVLARNGANQTPYDCAESHVVRQYLLPIQLRVENERGIGVDAGLSMLISTPAAYGHYDVMPPPGA 176
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: A0A6B2LVI1_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LVI1_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 7.970e-7
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 2 
Query:  194 NDRGVRPMHIACQTGDMRLVQRLLELGADIITADKAGNTPLHYASKGGYTEMVKMLVGQGAAV 382
            N+ G   +HI+  TG +R    L+E G  +   D AGNTP+H+A+K GY+E++K+L   GA++
Sbjct:    9 NNNGEGLLHISSLTGSVRCTSFLIECGLSVNAQDYAGNTPIHFAAKEGYSEIIKLLFYNGASL 71
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: A0A8H7X5D2_9HELO (Uncharacterized protein n=1 Tax=Cadophora sp. M221 TaxID=2774352 RepID=A0A8H7X5D2_9HELO)

HSP 1 Score: 61.2 bits (147), Expect = 8.790e-6
Identity = 44/146 (30.14%), Postives = 67/146 (45.89%), Query Frame = 2 
Query:  128 QNRQQDKIRDLLEVRGVGANFAN-DRGVRPMHIACQTGD---MRLVQRLLELGADIITADKAGNTPLHYASKGGYTEMVKMLVGQGAAVEKRNGSRLTAYD----VATDHVV-----------------RQYLLPLQLRAEAGNPD 490
            +N   D+IR +L       N    +    P+H A  +G+     ++Q L+  GAD+   D  GNTPLHYA+KGG+ + V+ML+  GA V+  N      +D        H +                 R++  PL + A AGNP+
Sbjct:   47 ENLDIDRIRAILTTSSYDINATTRETHETPLHKAITSGEGDRAGIIQLLVSHGADLNPHDCVGNTPLHYAAKGGWIDAVRMLIELGATVDVDNREPERKHDDGCGCGNQHALAGLLSGLTGGRFKSGSFREFSTPLHVAASAGNPN 192
[Close]
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Match: A0A3D4EMF3_9FLAO (MACPF domain-containing protein n=6 Tax=Leeuwenhoekiella TaxID=283735 RepID=A0A3D4EMF3_9FLAO)

HSP 1 Score: 61.6 bits (148), Expect = 9.730e-6
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  239 DMRLVQRLLELGADIITADKAGNTPLHYASKGGY--TEMVKMLVGQGAAVEKRNGSRLTAYDVATDHVVRQYL 451
            D++L++ LL+ G +I   +K G TPLH+A KGG   TE++K L+  GA VE +   R T YD A D  +RQ L
Sbjct: 1046 DIQLIEDLLDYGLNINAKNKIGETPLHWAVKGGNQNTEIIKKLLSNGALVEAQTIKRQTVYDYAEDKSIRQLL 1118
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1022.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KTC0_9PHAE2.230e-6643.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FP01_ECTSI2.830e-3666.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRJ6_9STRA5.280e-2040.94Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
W7TGZ7_9STRA6.830e-2045.27Serine threonine-protein phosphatase 6 regulatory ... [more]
A0A4D9DC57_9STRA9.400e-2044.59Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3JRB0_9STRA2.530e-1340.98Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9U2B4_9STRA1.170e-1046.67Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6B2LVI1_9EUKA7.970e-741.27Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A8H7X5D2_9HELO8.790e-630.14Uncharacterized protein n=1 Tax=Cadophora sp. M221... [more]
A0A3D4EMF3_9FLAO9.730e-645.21MACPF domain-containing protein n=6 Tax=Leeuwenhoe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1022contigS-latissima_F_contig1022:10234..23133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D7FP01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size3350
Cds size2121
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815383.1488302-UTR-S-latissima_F_contig1022:10233..103811622815383.1488302-UTR-S-latissima_F_contig1022:10233..10381Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 10234..10381 +
1693924850.6160264-UTR-S-latissima_F_contig1022:10233..103811693924850.6160264-UTR-S-latissima_F_contig1022:10233..10381Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 10234..10381 +
1622815383.1583107-UTR-S-latissima_F_contig1022:17567..176331622815383.1583107-UTR-S-latissima_F_contig1022:17567..17633Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 17568..17633 +
1693924850.6264188-UTR-S-latissima_F_contig1022:17567..176331693924850.6264188-UTR-S-latissima_F_contig1022:17567..17633Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 17568..17633 +
1622815383.2255425-UTR-S-latissima_F_contig1022:21886..228361622815383.2255425-UTR-S-latissima_F_contig1022:21886..22836Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 21887..22836 +
1693924850.6906276-UTR-S-latissima_F_contig1022:21886..228361693924850.6906276-UTR-S-latissima_F_contig1022:21886..22836Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 21887..22836 +
1622815383.2370377-UTR-S-latissima_F_contig1022:23068..231331622815383.2370377-UTR-S-latissima_F_contig1022:23068..23133Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 23069..23133 +
1693924850.7046154-UTR-S-latissima_F_contig1022:23068..231331693924850.7046154-UTR-S-latissima_F_contig1022:23068..23133Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 23069..23133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815383.1673436-CDS-S-latissima_F_contig1022:17633..176911622815383.1673436-CDS-S-latissima_F_contig1022:17633..17691Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 17634..17691 +
1693924850.634972-CDS-S-latissima_F_contig1022:17633..176911693924850.634972-CDS-S-latissima_F_contig1022:17633..17691Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 17634..17691 +
1622815383.181181-CDS-S-latissima_F_contig1022:18365..185621622815383.181181-CDS-S-latissima_F_contig1022:18365..18562Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 18366..18562 +
1693924850.6435175-CDS-S-latissima_F_contig1022:18365..185621693924850.6435175-CDS-S-latissima_F_contig1022:18365..18562Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 18366..18562 +
1622815383.1920831-CDS-S-latissima_F_contig1022:19253..204141622815383.1920831-CDS-S-latissima_F_contig1022:19253..20414Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 19254..20414 +
1693924850.6563656-CDS-S-latissima_F_contig1022:19253..204141693924850.6563656-CDS-S-latissima_F_contig1022:19253..20414Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 19254..20414 +
1622815383.2005923-CDS-S-latissima_F_contig1022:20835..209541622815383.2005923-CDS-S-latissima_F_contig1022:20835..20954Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 20836..20954 +
1693924850.6693213-CDS-S-latissima_F_contig1022:20835..209541693924850.6693213-CDS-S-latissima_F_contig1022:20835..20954Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 20836..20954 +
1622815383.21624-CDS-S-latissima_F_contig1022:21300..218861622815383.21624-CDS-S-latissima_F_contig1022:21300..21886Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 21301..21886 +
1693924850.680269-CDS-S-latissima_F_contig1022:21300..218861693924850.680269-CDS-S-latissima_F_contig1022:21300..21886Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 21301..21886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1022.200.1prot_S-latissima_F_contig1022.200.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1022 17634..21886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1022.200.1

>prot_S-latissima_F_contig1022.200.1 ID=prot_S-latissima_F_contig1022.200.1|Name=mRNA_S-latissima_F_contig1022.200.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=707bp
MHIACQTGDMRLVQRLLELGADIITADKAGNTPLHYASKGGYTEMVKMLV
GQGAAVEKRNGSRLTAYDVATDHVVRQYLLPLQLRAEAGNPDYAVHTMGI
TSDTPRNYEQYGVPGQPNALHGQPHGAHTAASAGPDRMSTALGALMQAPT
FDPPRPGAAGMAPPTVYPGGAGGAPPMQRGSNSPPLPGSSGVGFADPSAA
LPPPPAMGMGALPPAAPTAPGPSVPALGSAPVKFAGPTAAASGAAPPALP
STTAPVSSGPTASAEGRGGSVTPTRPGDVSSQAQSSSPVVAAANFSPEIA
GRTFPGTGSQVESPPPPPAGSPRSGTGGGAVSSSAMMEPVSTGLYFPEEE
TPASTESVTVAGGAREATPPNSGVSTAVGGQPFSVVPVHVQQEEPDATEE
SLRPGSASVLGGDPVMTNVDLSSTFQGQATISGGEGSFQAGGMGAALPPP
PPAHPSSAPSSGRGAPPPSRPPGAYTPGPGPHQPASEQPGKFKPIKPDGF
HSSASDKALQRRYGHTKIVRDMGAPPTAAQLGGPQGPAGGGASYPPPMGG
PPPMAMAGPPPMAGPPPMAGQSSDGYAQAQARPQYASPQAGYYGQPYGGA
GAMQPSFGQQPFAQPPPPPAANQQSAMPAYPRPPPNMNGGVGEGRGSLPS
PGGYAYKPAGMGSAALPSTASQENESRGGRGRGGYNVFNPSTDRVVAADS
TSNAVL*
back to top

mRNA from alignment at S-latissima_F_contig1022:10234..23133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1022.200.1 ID=mRNA_S-latissima_F_contig1022.200.1|Name=mRNA_S-latissima_F_contig1022.200.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=12900bp|location=Sequence derived from alignment at S-latissima_F_contig1022:10234..23133+ (Saccharina latissima SLPER63f female)
GGTGCTGGCCTTTCAGTCTGGCTGCCTAGCAGGGGTGCGTAGTTCAGGTA
GATTTTAAAACTTTTGCTTCAGGGTAAGGTGGGGGAGATGATGGCGCCCC
CCCGTCCAGAGGCGCGTGTGTAGGATTCAGAACAGGCAACAGGACAAGGT
GAGGGGTATGCTCCTTGCTACGTATATATGCACCGAGTGCTCGGCGTATT
GTAGCATTCTCTGAGCAATTTGCGTGTTGTTGCTGATAGCGCACAGGAAG
TGAAGCTGACTGGTACCAAGGCAGTGCGAAAAGGGAACGAGCCACTGCCT
GGTCAAGCTAGAATTTCCTGCTGTATTGCAGTAGAAAAATTGGGTACGTG
GGACCGGCCTTACTCCCATCTCCGGAGGTTTTGTACGGGTTCATCCCGGT
TGTGTCCCTTGCCTAGTATTTTCAAAGTTAGTACGGTAGGGGTTACAAAG
GTTACCCCTTGTCCGGGGAAAAGCTCTATGCGATGTTACTCCCCCATGGT
GTGGTGTGTATTTTCACATTAAACTTCCTTTCCCCCTTCGAACCCACAAC
CCAGGTCCGTCCTTTTTCCCCAAAAAAGGGGTACCGTTTGTGGTAACAAA
ACTACGCACAAGATATACGCGCTAGGCAGAAGCAAAAAGAGACAATGCAA
TCCCAATACGACAGGAAATCCCTATCTCCTAGCAATCCAGGTACATAAAA
AGAGAGAAAAAGAGAAAAGAAGAAAAGAAAAAAAAAAAAAAAGAAAAAAA
AAGAGAATAAAAGTAAACAAAATGAAGCAAATCAACAATCAAACAACCAA
CGAAAGATGAAAAAAATAAAAGAAAAAAAAGTTCGGTTCTCCCAGAGGAG
GGCGACGCCAATACAATAAAATTAAATAAAAACGAAATGAAATGGACTGA
ACCCAGGTACACGGGGAAGTAAAAAAACAAAACAGGAAAGGACGGGCAGC
CGGGGAACCCCAAAAGCACCTTCCGGCGCCGGGGCGGTTTTGCCCCCGGG
GTACAGACATTCTAAGCTTTTAAAAGTCGGCGGGTACCTACTCTGTCTGC
CGTCTCTTTCCGTTTTCCCCGCCGGGTTTTCCTAGAACCCCCCCCCCCCC
CCCGTCTCCTTTCCCCTTGGACGCCCCCCATACAACGGATACGTGGCATT
CCCTATCATTCCGTTTCTTTTTTCGTGCCCAAGAGTCCGGGAAAGAGAAG
AGGAAAAAACAAAAACAAAGTGAAGAACAAACAAACAGACAAGGGAAAAA
AAGAAAGAACGAAAAAACCCCAAGGAAAAACACGCTTTGCCATCCCCAAG
AAGCAGGTAGTACCTTCCTAACCCAGGGATAAGAAAAAGAACAAGAAACT
AAAAACGAAACAAAAAAAACAAACAGGGGCGTTCGAAGCGTAATAGGTGG
CGGTACGGGTGTCTAGACGGGATTACTAGTCAGCCTGGTCCCTTGCATTG
TCGGTTCTCCCTCTCCTCTGCCGGGGTTTTTCCCTTTACGGCGTTGCCCC
CCCCTTCCCCCACCCCCTTGTGCACCCCCCGCAAGGAGCGTGGCGGTCTC
CCCAGTTCCCCTGCCTTGTGCATCGGCCCCATAAATTTCACCCGCTTGAG
GCCCCCCCCCCTGTCCCATTTTGCCCCCCCTTAGTGCTGAAACGGTCCAC
ACCGGGCTCTCCCAAACCCAAAGGAACCCTGGCCTGGACCCTCTGTGGCT
CGAAACATTTTGGGGTTTAGCAAGGCATTTTGCCAGGATTTTGGTTGTCC
GCCGGTTGCGTCCCTCCCCCCCCGTCAGGCCCAAAAATCACCGGACTGGG
TAGTCGCCCCTTGGGGTTGCCGTGCCACGGCCCCCGCAAAAAAAACAGCC
GCTTTTCGGATTTTCGTCGTTTCGATGCTTCGAATCGTGCTGCTTGAGCC
CCTTTTTTGGGGTAAGGAGGGCCCTTGTGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGG
GGGGGGGGGGGTTTGGGGGGGGGGTTTTGGGGTGGTTTTGGGGGGGGGGC
CGGGGGTGGGGTGCACTTCGGGTAACCCCGCCGGGTACAAAAGGGTCGCT
GTCAAACCCTCTGCCCAGCTGCTTCGAACGAGCGGCGGAGGGGGGGGTGT
TGGTCTGTGTTCGTAGGATCATCGTTTCCTTTTTTTTTTCCAAAACCGGA
GGCCTGCCGCTTCGAAGACGTCACGGGGGTTCATCATTTTGCGAGCCCCG
GCCGACTTTGATCGATTCCTCTCTCGGTACAGCATACCCCATACTCCCTT
CGCGCGCAGCCAAGGCACCTTTGCCGGGCACTGCCCTCCCGAGGTGAACA
AACCCCTATGATGTTTTCGTCTTCGCTAAAGGTACGAAAAACAAATGAAA
ACCGCAGCGAAAAAACCTTAAACAGCAGGGGCGAAGCAGCACCTTGTGTG
CCCCTGCGTGACTTAAACCCCCAATAAAAAGCCACAATCATCTGTGCGTA
CGAAGCGCGAAAGCCGTCGTGGAACTGGCGGGTTTTTGTAAGCATTTGGG
GGTATGCAACGGCGAAAGTACTGCCAAGTAGCTTCGGTCGCAGATCGTAG
CTTTCTGCGACGATGAAACACAGTACAAAAGGGATTTTCTATCTGTCCGA
TTCTTGAATGCGCCGAGAACAGCCCTGTCGACTGTTTACCCTGTAGGCGG
AAAAAACCCCTGTTCTAGGGGAAATGCCCCGGTCCCGCAAAGTGTGATCG
GGATGCGACGATATCAGCAACACTTTTCCCGCGGGCACAAGCGAAATCCC
CTTTAGTTTTTTGCAATCAGTCGGTCCCCTTTTTTTGTAAAGTACTTTAT
GATGGTCTTTCCTGTGGGGGAAATTTAGGATCCCAAAAATTGCAAAGGGG
GTGGAGCATTTAATGAAATCAGGGGGCGATTTTCGAGCTCGGCGGGAAGG
TGTTGGTCTACCCCTTTCCCGTTAGGCATTTTTTGACGGCTCCTCATCTC
GTCAAGATGGCTCGTCGCCAAGTGATTTTTAAGCGGTCGCCCCGGTGGCA
ATGGGTCGATTTATAGGGGATCAATTTCAGTGATTTTTGTGTTAAGAGCT
TTTGGGGGGTTCTCCACCCCTTCACGAATTTTTCACTTATCCCCTAGACG
GCCCTCCTGCCCTAATGAAATGCTGCTTCGCGTTTCTTGCCCCCAACCAC
AGTACCCTTTTAGGGGCCTTGAAAACCTCGTGGTCCCCTATCGGTAGGAG
TCTTTCGGTTTGGTAGTATCTTCGAAAACGCGACCCCAGCGACCACCCCC
CGAAATTCGCACACGCGGTCTCAGAGTTTCAGCGGACTATCTCGGGGGGG
GGCGGTAGGTGCGTCGGCCCCCTTTTCCCCGCGGACCATGCTATTTTGAA
GGGGAGCCGAGGTTCGGCCCACTCGCAATCCCCGCTTTGGTGGTGGTGTG
GTGTGGGGGACCTCGACTTTTACCCCACGATGATGTTTTGGGGGAAAAAG
TAACATACCCCGAAAGTTGTGTGGTTGGGAAGGTTGGTTTTTAGAGTAGA
AAAACCCTCGCAACTACTCGCCACGACATTTCCCTGGACATAAAACCTTG
CGGTAAACGGGCGGCCTTTTGGCGTCTTTCGGCTTGTCGGTTGATGCAAA
ATTCCCGGAGGGCGAAAATTCTGGTCGAGTTGTGGTCTGAACCCCTTTGT
GGTGGGGGGAGGCTGAGGGGGAAAATTTTAACATCGTGTCTCTAGTGATG
GGGCTTGTGGGTTAGGGTGTAACAATGCGCTTTTGATCTTCGGGCCCGGT
GCCGTTGTGAGAGGGATTCCACCCCTTTGGTGCTGAAAAAAGGTTGGTGA
GAGCTAGTTTTCAATTTGGGAGCAAAAGAAGAATCGTTTGCCTATCGTTG
ATCAAATCGGCCCCGATCCCCCGAACTTGTTTCATTTTCGTCGCACCCCT
AGTCCCCTTTCCCAGTTCGTGCATTTGCATCCACAGGAGAACAGGCACCT
TAGTTGGGATCTTCCTATACCTCTTCCCCGCTTTTTCCCGAAAACACGTT
TTCAGTCGGTGTTTTGGTACACTTGTTTGGGGAAAGCCCAAAGACGAAAT
TAACTGCCTGTATTTTCCCGCCCAAATCGAAACGCATTGACAAGCCCTTG
TCTAGAATTCGGGGATACACAGATTACGGATATAGACTCCTTGACTGCGC
CAACCCAAACAAACCCGGTGGCTGCTGTTTTTCCTGACCTGAACAAAAAA
CTTGATATCAGCACGGGAAAGTGTCCTGCCCGGGTCGTCGAGTTTCTGAG
GCCGCGAAGTCACGCCAAGTTTTTGACCCTTGTCAGGGTGCGCTCGTTGT
CCCAAACCCCTTTTCCCTTTTCAGCCCGGGGGCGCACGTTGTGGTCGCTA
CCGCCCCAAGTGCCTCCTTCTGCCCCGTCGAGCCTCGCGGTGATTCCCGC
CCGGAGTGAGGCGTCCCCTCCTCCTTTTTTTCTTCTTTTTCAAACTTTTT
CCCCTTTTGCTAACTGGGCCCTTTTCCGTCCCAGTCCCGGTTTGCGCCTG
GTTCCATTTGACAGGGGGCAGCCCTCCCCGCCAAAGCCGACACTCCCGTC
CTTCCTGTCGCGTATGCGTACCACGCGATGGCAGCCTCTCCACTCCCCAG
GCTGCACACATTGCGCTCTCTGCTGTGGTGATATTCCCGCGTTGCCCTCA
GGGGGATGAACTCCTTGGCGTTGGGGTTGAAAATAAAAGGCATCACCACC
ACCCCGCGCGGTCTCTACGGCGACAGGTTCGCCAGCCAGACCGCGCAGGG
TTCCCTCTCCACCAAGCCCGAGGCTCGCTTGGGTGTGCCGCTAGACCGTT
GCGGGTCCTGGCGGGGTTCCTCGGCCCACCCCAAGGCGGGGCAGGCCCAG
GCCCAGGGTGTAGATGACTTTATTATGGGCCACCGTAATAGGAGTACCAA
TATGTATATAGCTTGGGTAGATGCTATACATACCTGCAACATACCCAACG
AAGGTGTTTCTCGTACAATACGAACGTGGTTTGAATAGTTGATGGCGCTA
TCTTACGAGTATCCTTCCGGGATGTTGTGTACTCGACAGCTGCAGCTGAC
TTGGCTTATATACCAGGTGTGTATGTACCTGGTACCAGGGAATGATACTA
CGGTACTTGATGCTGGGCACTGGCACATGCAGCCAAGCAGTAGATTACTT
AATCAGTATATATACCAGCAGGGTATGTACGTACCCAATGACGATTGACG
GTGTCTGCCTCCACGCCTTTTGAGCAAAGATGTCGGGAGACAGCACTTTC
ACCCCTTGAGGGCGTGTCTTAACTTCACTTCGCGGGCATTGGAACGGAAC
GAACGTAAAATTATTTGCCTGAAAAAGTGGTGCTGATTGGATATTGAGAA
AAAAACCACGCGAACAGATTCCAAGCGTTCCAACCTGTCCGTAAATTTGT
AAAGAGGAAGCGTATCTGTCAAAACAGTAATCCTTGTTCAGCAGAACCGA
ACGGCCCACTTGGAACGAGATTTACGGCAGTTGATTGGTGCTGGAAGTGT
TGCAACTGGTTGCGACATTTGCTGGGAGGCCCACCAGGGCATGGGGCAAA
ATGAGATGGCATGGGAGCACGCGATGGAGCACGTGCAGACGCCACAAGTC
TCGCCTGCGGTAGGAGCCACGCGATACGGCCATGGCCTGTACAGGAGGCT
CACGAGGGAAAAATCCGGGTGGCGAACGAGACTGTGGCGAGAGATATCTA
GCAAAAATGCTTGACCGATGTTCACAGAAGCACCAGGATACCTCGTCGAG
CCGCGACGGCGATATCATAACTTCTAGATTTGTCCCGAGGGTGCCACTTG
GACGGCTAGCACTGCTTGGTCTGAGGCATGTCAGACGCTCTATTTGCGTG
TGAAGCTACCCTCTGTACCAGGAGCACTCGCTGCCAACGTGACGGTACCC
CTGTCCTAGAGTCCAGCTGCACAGTCCCGAGGCAAATTTCATGCGTTACT
TTCTGTTGCGGCCTGTTCCAGGATCGGGTGCCTAAAAAGTCGATCGGACG
CAAACCGCAAAAACAGCATGGAATGGAACGAACGAACGCGAATAGTCTCG
TTCCGTTCCAGCCATTCCAAGCTATCGAATGGAGTTAAGACACGGCCTGA
CAGATTCGTCAAGGCAAATGCCTTGACAGACAGCCTTGACAGCAAAAAAC
TGGGGACACTATCGAAAATCCCCGCTTTTTCAAAAACGCCTGAAAATAAT
GTATAGTCGTAGGTGTGTTTCCCTGAATTTTGTTTTTTTTCCGGCATTTT
GCTACATTTCCGAGCCCGATCTACAGAAAATATTTGAATTGAACTGCAGA
ATATCGATGATTTGATTTGAAACTATTAATAGCTCATATCAAACGAGTAA
AATAGCCGCGCAAAAAAAATACAAAAATACAAAAATAGGGGTTTCCACAC
GTATTAGGAGGCTTTTTCTGCCAGGGGGGTTGGGGACATATGTCTACTAT
TAATAGACAGCTGGATTTTCCTTGACAGCTAGCCTTGACAGACAGACAGC
TTGACATTGACATGTCTCCCGACATCTTTGCTTTTGAGCTCCTCCACATC
CGTGAAGGGTGAAGAACCAATGGCTCGCGTTGGTCACTTGGTATGATATG
CATCATAGCTCCATATATTTTTCTCGTATACAGGCTACGTAGCAGTACGA
GTATCTACATAGATACTTCGTATATATGAGTACTGACAATACACTAATCG
TGCGACCCTGCTGTTGCTGTGGAGCCTAAAGCCCCATGAATGGCACGACC
TCAAACAGTAACCGCTAATCAGGACGTCGTTTCATTCCTTAAGTTTGGCT
GCGCAACGGCTCATATTTATATGGGCATGTCCTTTCGGATGACAATGCTG
CTGCCGATGCGTCGCGTCTCATTGCTCTCCATGAAGATCGGGCTCACAAG
CGAAAAGGCGCCGCTTCTCTTTGAGTAACCATTCCTTCGTCGACCTCAAG
CCCTTCGCCAATTTCACCCCTGATTCCACCAACCATGTTTTGCGCCCCAA
GTGTTACAGCAGCCCTGCTGTACCTGGCAGCAGTTACAACACATATCGAT
CGGGTCGACGCCGAAAAAAGCATACCTGGTACATGCAACAGTAAAAGCAC
GTTGAGCCGAGCACTCCGCGTAGTAGCAACAAGAACCCCCTCTACTGCGC
ACTCATCTTGATTCAACTTGATTCGACTACGTGAAGCATGACGCACACGC
ACTAATCTCATTCGCTCGCCGTCCTCGCGTCGTCGTTGGTCGCTATTTCT
GTGCTGCTGTGCAACCGGCTGCGAATTTCAAAAGATCCGTGATCTGCTGG
AGGTGCGAGGCGTCGGCGCGAACTTTGCTAACGACCGAGGAGTGAGGCCC
ATGCACATTGCATGCCAAACGGGAGACATGCGTCTTGTGCAGCGACTGCT
AGAGCTCGGTGAGGCGACCACACTCTTGTCTGTAAAAGTAGTAATGGATA
GACTCGGGGGGGTTCGCTGCTCAGGAGAATTGTGAACCTGGTGCGTTCGT
TAGAAGGCACAGTTGAAGGGTCGGCTCAAAACGACCCTTGTGTTACTTTC
GAAGGAAGATTTTCGCTGTACGCCCACTCTTGAAATATCGTGCCTTCAAG
TTCTCACTCTGATGCCTTTGGTGCTCTCTGTGAGCTGTAGCTGTGCATCA
CAGGTCTTTGACGCTTTTGCCTGTTGAAGGTATTTTTGATTGTCGCGATC
AACGTCTTAAGCTTCCAGTAGACATTGGCCCAACGTTTGGCGGTCGGTGT
TGAAAGATTCATCGGGCCGATCAGCGTGATGCTAACGCAGTTCTGTATCA
TCAGGATTGTAGTGACAACATGGCGATGGTGAGCGAGGGCGGAAATGTGT
GCGTGAAATACGGCAGACACCTCTGCTGTTATATGCTGTTACCCCTTACG
CGGTTTACCTTGGCAGTATATAGTTTTAGGAAACAGGATCCGAGTTTGTG
AGGTTATACGACACACGAGGAGTGCAATCAGCGCGTGTCCTATCTACAGA
AAATCGTACCAGGAGTTTGTATCCTCTCCTTGTTTTCAACTGCCACCATC
ACGATGCGTCTTTATTCGATCTTCTGTATCAGGGGCGGACATCATCACGG
CGGACAAGGCGGGCAACACCCCCCTGCACTACGCCTCGAAGGGAGGGTAC
ACGGAGATGGTCAAGATGCTGGTGGGGCAGGGAGCGGCGGTCGAGAAACG
AAACGGTTCGCGCCTGACAGCGTATGACGTAGCGACGGACCACGTCGTCC
GGCAATACCTTCTGCCTCTGCAGCTCAGGGTGAGCCGCAGACAGCTTTGT
CGTATCGCAGGGGGGGGTTGCTCGGAATACCAATAGTAATAACCCGCATG
TCGCAAAGGTCCTATATACTGGTACGGACTAGGCATCTCTAATGTGAAAG
GTGGATGATCCAGGGCGAGCTCGTCCTCGTATCCAAAGCAAATCCCCGTA
CAATCGTGTATTTTACCGTCCACACAACATCTTACGGTGTGTGTAATATT
GTTCTAATTTGGTCGTTGTGATCTCGTGTCGAAGAGATGCCTGGCGTCTG
TTGGAGTAGCAAAAAACGCGTACGTGCTTCGTCTGCCAATATCGTCGACC
TCTTTCGTGTGCCCACTACGGTATACTCTCCCTGTATTTCATCCCGGTTG
GCCTTGACACGCGTCTACGGCATACAGTGGGTACCCCGACTTAAGAGAGG
TACGTTACAGGCCGAAAACACCTCGTTTAACTACTGTAGCCTCTCTTTTG
CACAATGGTAAACATATAGCTTTAGTGCAGGTGGGTCCAGCCGATTTAGC
CTCTCTTAACTATACTATTCTCTTAGCGTGCCTTCTCCTAACCCGGGGTA
CCCACTGTACAGTATTTTATGGAAGTTGGGCCCCCAAGTGAACAGCCGCC
TTTGCACCCTTGCAATGCCTCAAGTCGGCCATCCTCGTCCTATCCTACCC
TCGCTCTACGATGCGCGCAGGCGGAGGCTGGAAACCCTGACTACGCTGTA
CACACCATGGGGATCACCTCAGACACCCCGCGCAACTATGAGCAGTACGG
CGTTCCGGGGCAACCCAACGCCCTGCACGGCCAGCCCCACGGCGCCCATA
CCGCTGCGTCGGCAGGCCCTGACCGTATGAGCACGGCCCTCGGAGCCTTG
ATGCAGGCGCCGACCTTCGACCCCCCTCGGCCTGGTGCCGCTGGAATGGC
ACCCCCCACCGTATACCCCGGAGGCGCTGGTGGCGCCCCGCCGATGCAAC
GTGGCTCCAATTCACCCCCACTCCCCGGTAGCAGCGGCGTAGGGTTCGCC
GATCCATCGGCTGCTCTTCCGCCCCCACCGGCGATGGGTATGGGGGCGTT
ACCGCCCGCCGCGCCCACCGCGCCGGGGCCGTCTGTGCCTGCGCTCGGTT
CCGCCCCGGTTAAGTTCGCTGGGCCTACCGCTGCTGCATCAGGGGCTGCC
CCTCCTGCGCTCCCTTCGACAACAGCACCGGTGAGCTCTGGGCCCACAGC
GAGTGCCGAAGGGAGAGGGGGTTCAGTTACGCCTACCCGACCCGGGGATG
TTTCTTCTCAGGCACAATCCTCATCGCCCGTAGTGGCGGCGGCGAATTTC
TCCCCTGAAATTGCCGGGCGAACCTTTCCGGGCACCGGTTCGCAGGTTGA
GTCTCCGCCGCCTCCGCCAGCGGGAAGCCCGCGGTCGGGCACGGGAGGGG
GCGCGGTTAGCTCCAGCGCAATGATGGAACCTGTGTCTACAGGACTGTAT
TTCCCCGAGGAGGAAACGCCTGCTTCAACCGAAAGTGTAACGGTTGCGGG
CGGCGCCAGAGAAGCGACGCCTCCGAACTCCGGTGTAAGTACCGCTGTCG
GTGGACAGCCATTCTCGGTTGTGCCTGTACACGTGCAACAGGAGGAGCCG
GACGCTACGGAGGAATCTCTGCGACCTGGTTCCGCATCAGTTTTGGGGGG
CGACCCGGTTATGACTAATGTGGACCTCTCGTCGACGTTTCAGGGTCAAG
CGACAATTTCTGGAGGCGAGGGCTCGTTTCAAGCTGGTGGGATGGGCGCG
GCTCTTCCTCCCCCTCCCCCTGCCCATCCATCGTCTGCGCCTTCGAGCGG
GCGGGGTGCGCCACCGCCTTCTCGGCCACCGGTAAGTGTTGGGATTTCTA
ACGGGCTGGATGTATGCTATCGTCCCCGTTTTTGTTGTTGCGCTCGCTCC
TTGTGACGTGCTCGCATCGTTTCAGCCTGCTCTTCTTTTGGTGCATCACT
GGGCGAGGGCGCTTGCTCACCCACACATGCTAGTAGCGTGACTGTTGCCG
CGTTTTTATGTATTGTTGAACACCACTGAAGTGTCACAGAGTTTGCGCCT
AACACTGACCAACACCGGCAGTAGCAGCAGTATTCACAAAGTTTACGCCT
AACGCCTACCTGCCCCAGGTACTTCACGCATGGACCCAAGCACGAGCAGA
CTTGTTCTTTGTCGAAAGGCAACCAGCGTAATGTCGTGTATCCTTGCCTT
GTATAATGCCAGATTTCACCGACTCACTTCGTCCTCCGTTTTGGTTTAGC
AGGGTGCCTACACACCAGGCCCTGGACCGCACCAGCCGGCGAGTGAACAG
CCGGGCAAGTTCAAGCCTATTAAGCCTGACGGCTTCCACTCAAGTGCATC
GGACAAGGCGTTGCAGCGCAGGTGATTGCCAACAACAAGTAGCGCGAAGC
CTGCGAGGGTTTGTCGTACCACGTACACTCTTATCCTTGAATGAGGGAAG
TTTCGCGTCTAGACTGTGCCTAAAACGCTATGTTGTGATGTACGGTAGAC
CTTCGTGTGTGGCCTGCGGCGCCCCCTACAGTAGTTATGTACTTCCATGG
TGTCTGCGGACAACGTAAATACATGTTGCAAGTTAATATATGAGTCGATT
ATGTGCTTGGTATCTACGTGCCTTACAGGAGCGGAAGACCCTGTTTGCCA
TCTCGCTGTCCCTCCCCGCAATATACTCACTACGGTTTCGTGCTTTCCGC
GCCCGTCGGATTCGCAGGTATGGCCACACAAAAATCGTGCGCGACATGGG
CGCACCGCCAACGGCTGCCCAGCTGGGTGGTCCCCAAGGACCCGCTGGAG
GCGGCGCATCCTACCCTCCGCCAATGGGAGGGCCGCCGCCAATGGCGATG
GCGGGGCCACCGCCCATGGCGGGACCTCCACCGATGGCGGGACAGTCCAG
TGACGGGTATGCGCAGGCTCAAGCGCGTCCCCAGTATGCGTCACCGCAGG
CGGGATACTACGGCCAACCGTACGGTGGTGCCGGGGCCATGCAGCCGAGC
TTCGGACAGCAGCCATTTGCACAGCCGCCGCCACCGCCAGCCGCTAACCA
GCAGAGCGCGATGCCGGCGTACCCCAGGCCGCCCCCGAACATGAACGGCG
GCGTTGGCGAAGGTCGCGGCTCATTGCCGTCGCCAGGCGGCTACGCGTAC
AAGCCTGCTGGGATGGGGTCCGCGGCTCTTCCTTCCACGGCGTCGCAAGA
AAACGAATCCCGGGGCGGGAGGGGGAGGGGCGGGTATAACGTTTTTAACC
CGTCCACAGATAGGGTGGTCGCTGCGGATTCCACTTCCAATGCCGTTTTG
TGACGTATTTTTAAGCGTCTGCTTTGTTTGGGGGCGTCTGTTATTGTGGT
TGTGCTTGCCCCCGGGATGTTGTAAGGATACCGTCAGCAGGGTGGGGTCG
GGGGTTACCCTCCAATTTGTTTATACCTTACGGTAAGGCCTGGTCGCTTA
GTTTACGAAGCTTTGATGCTTTGTAGCTTTGGGTAAGGTTTTGGCTTGGT
TAAGATGTAGTGTGAGGTTGGAGAGAGGTCGCATTGACCGCGAGCAATAT
TTTCCCGTCTCGGTATATGCCCCAGTTGGCGGTAGTGCAACAACACATTA
AGTCGTAAACAGTCCCAGTACACTTTTTATTTGACATCTCAGATTCTTGG
TGTTCGTACACCAGGCATTTATTGCTGTCCTATGAGTAAGTAATGACGGG
CTTGGATACACCAGACTTGGCAACAACCAACACCACCAATCGCTCGTCGC
GAATATCGCGATCTTGACATCGTGACGCTATTATCGTACAGCTCACAAAG
GAGGGCCTGTGGTCATCAGGGGACATCCTGGGTATATCCGCAGTGCTGGC
CCTGAACTGAGCAGTGGTTCACCCGGCGACCTGTGATAGGCCGCCTATCT
AGAGCCTACGCTTGCACTGCTATGTACCTGGTATGTGACAGCAGTGATGA
TGGAACCACATAGTGCCCGACGATTAGGGTTGCACCCCGGCCTCAAAATT
TGGAACCGGTAACCGGACCGGATTGTGGGGGGTTCAGACGGAACCGGAAC
AGGGTACCCGGCCTGCTTTCAGCCCGGGTACCCGGGTACAAGGGTTACCA
TGCACTATTCTCTCCCCTTTTAGCGTTTCAGCGGGCCTGAACGGTCCGCA
GGCGGCGTGGTAAGGCGGACGGTGGGAGGGAATGACTTCATTTCGTCTAT
TCTCTCGATGAATCATGCCAAAGAAAGAAGATGGAAGGCAGAAGGCTGCC
TCTTGCAGTGTGTGCTGAGAGAGAGGTGTGTGTGTTAAATGTTAAAATAC
ACCACTCACACAGAGACCAGACAGGCTGCTGGATTTATATCCCCCCTGTA
TATCCCCTTCTTTTGTCCCCTATTTCACAGCAGAAACGAAGTAGGCGGCC
TCAGGGAGAAAAATTATCCCCCCCCTTATTTCGCTCGTCAAGTCATCATC
ATTTCGCTCGTCTTGGAAGCACAATCAACGGATACCCGGGTACCCGGGGT
AAAATTATTTGTTCCGGTCCGATTCCGGTTCCGACGGTTCCGGGTACCCG
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig1022:10234..23133+

>mRNA_S-latissima_F_contig1022.200.1 ID=mRNA_S-latissima_F_contig1022.200.1|Name=mRNA_S-latissima_F_contig1022.200.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=4242bp|location=Sequence derived from alignment at S-latissima_F_contig1022:10234..23133+ (Saccharina latissima SLPER63f female)
ATGCACATTGCATGCCAAACGGGAGACATGCGTCTTGTGCAGCGACTGCT
AGAGCTCGATGCACATTGCATGCCAAACGGGAGACATGCGTCTTGTGCAG
CGACTGCTAGAGCTCGGGGCGGACATCATCACGGCGGACAAGGCGGGCAA
CACCCCCCTGCACTACGCCTCGAAGGGAGGGTACACGGAGATGGTCAAGA
TGCTGGTGGGGCAGGGAGCGGCGGTCGAGAAACGAAACGGTTCGCGCCTG
ACAGCGTATGACGTAGCGACGGACCACGTCGTCCGGCAATACCTTCTGCC
TCTGCAGCTCAGGGGGCGGACATCATCACGGCGGACAAGGCGGGCAACAC
CCCCCTGCACTACGCCTCGAAGGGAGGGTACACGGAGATGGTCAAGATGC
TGGTGGGGCAGGGAGCGGCGGTCGAGAAACGAAACGGTTCGCGCCTGACA
GCGTATGACGTAGCGACGGACCACGTCGTCCGGCAATACCTTCTGCCTCT
GCAGCTCAGGGCGGAGGCTGGAAACCCTGACTACGCTGTACACACCATGG
GGATCACCTCAGACACCCCGCGCAACTATGAGCAGTACGGCGTTCCGGGG
CAACCCAACGCCCTGCACGGCCAGCCCCACGGCGCCCATACCGCTGCGTC
GGCAGGCCCTGACCGTATGAGCACGGCCCTCGGAGCCTTGATGCAGGCGC
CGACCTTCGACCCCCCTCGGCCTGGTGCCGCTGGAATGGCACCCCCCACC
GTATACCCCGGAGGCGCTGGTGGCGCCCCGCCGATGCAACGTGGCTCCAA
TTCACCCCCACTCCCCGGTAGCAGCGGCGTAGGGTTCGCCGATCCATCGG
CTGCTCTTCCGCCCCCACCGGCGATGGGTATGGGGGCGTTACCGCCCGCC
GCGCCCACCGCGCCGGGGCCGTCTGTGCCTGCGCTCGGTTCCGCCCCGGT
TAAGTTCGCTGGGCCTACCGCTGCTGCATCAGGGGCTGCCCCTCCTGCGC
TCCCTTCGACAACAGCACCGGTGAGCTCTGGGCCCACAGCGAGTGCCGAA
GGGAGAGGGGGTTCAGTTACGCCTACCCGACCCGGGGATGTTTCTTCTCA
GGCACAATCCTCATCGCCCGTAGTGGCGGCGGCGAATTTCTCCCCTGAAA
TTGCCGGGCGAACCTTTCCGGGCACCGGTTCGCAGGTTGAGTCTCCGCCG
CCTCCGCCAGCGGGAAGCCCGCGGTCGGGCACGGGAGGGGGCGCGGTTAG
CTCCAGCGCAATGATGGAACCTGTGTCTACAGGACTGTATTTCCCCGAGG
AGGAAACGCCTGCTTCAACCGAAAGTGTAACGGTTGCGGGCGGCGCCAGA
GAAGCGACGCCTCCGAACTCCGGTGTAAGTACCGCTGTCGGTGGACAGCC
ATTCTCGGTTGTGCCTGTACACGTGCAACAGGAGGAGCCGGACGCTACGG
AGGAATCTCTGCGACCTGGTTCCGCATCAGTTTTGGGGGGCGACCCGGTT
ATGACTAATGTGGACCTCTCGTCGACGTTTCAGGGTCAAGCGACAATTTC
TGGAGGCGAGGGCTCGTTTCAAGCTGGTGGGATGGGCGCGGCTCTTCCTC
CCCCTCCCCCTGCCCATCCATCGTCTGCGCCTTCGAGCGGGCGGGGTGCG
CCACCGCCTTCTCGGCCACCGGCGGAGGCTGGAAACCCTGACTACGCTGT
ACACACCATGGGGATCACCTCAGACACCCCGCGCAACTATGAGCAGTACG
GCGTTCCGGGGCAACCCAACGCCCTGCACGGCCAGCCCCACGGCGCCCAT
ACCGCTGCGTCGGCAGGCCCTGACCGTATGAGCACGGCCCTCGGAGCCTT
GATGCAGGCGCCGACCTTCGACCCCCCTCGGCCTGGTGCCGCTGGAATGG
CACCCCCCACCGTATACCCCGGAGGCGCTGGTGGCGCCCCGCCGATGCAA
CGTGGCTCCAATTCACCCCCACTCCCCGGTAGCAGCGGCGTAGGGTTCGC
CGATCCATCGGCTGCTCTTCCGCCCCCACCGGCGATGGGTATGGGGGCGT
TACCGCCCGCCGCGCCCACCGCGCCGGGGCCGTCTGTGCCTGCGCTCGGT
TCCGCCCCGGTTAAGTTCGCTGGGCCTACCGCTGCTGCATCAGGGGCTGC
CCCTCCTGCGCTCCCTTCGACAACAGCACCGGTGAGCTCTGGGCCCACAG
CGAGTGCCGAAGGGAGAGGGGGTTCAGTTACGCCTACCCGACCCGGGGAT
GTTTCTTCTCAGGCACAATCCTCATCGCCCGTAGTGGCGGCGGCGAATTT
CTCCCCTGAAATTGCCGGGCGAACCTTTCCGGGCACCGGTTCGCAGGTTG
AGTCTCCGCCGCCTCCGCCAGCGGGAAGCCCGCGGTCGGGCACGGGAGGG
GGCGCGGTTAGCTCCAGCGCAATGATGGAACCTGTGTCTACAGGACTGTA
TTTCCCCGAGGAGGAAACGCCTGCTTCAACCGAAAGTGTAACGGTTGCGG
GCGGCGCCAGAGAAGCGACGCCTCCGAACTCCGGTGTAAGTACCGCTGTC
GGTGGACAGCCATTCTCGGTTGTGCCTGTACACGTGCAACAGGAGGAGCC
GGACGCTACGGAGGAATCTCTGCGACCTGGTTCCGCATCAGTTTTGGGGG
GCGACCCGGTTATGACTAATGTGGACCTCTCGTCGACGTTTCAGGGTCAA
GCGACAATTTCTGGAGGCGAGGGCTCGTTTCAAGCTGGTGGGATGGGCGC
GGCTCTTCCTCCCCCTCCCCCTGCCCATCCATCGTCTGCGCCTTCGAGCG
GGCGGGGTGCGCCACCGCCTTCTCGGCCACCGGGTGCCTACACACCAGGC
CCTGGACCGCACCAGCCGGCGAGTGAACAGCCGGGCAAGTTCAAGCCTAT
TAAGCCTGACGGCTTCCACTCAAGTGCATCGGACAAGGCGTTGCAGCGCA
GGGTGCCTACACACCAGGCCCTGGACCGCACCAGCCGGCGAGTGAACAGC
CGGGCAAGTTCAAGCCTATTAAGCCTGACGGCTTCCACTCAAGTGCATCG
GACAAGGCGTTGCAGCGCAGGTATGGCCACACAAAAATCGTGCGCGACAT
GGGCGCACCGCCAACGGCTGCCCAGCTGGGTGGTCCCCAAGGACCCGCTG
GAGGCGGCGCATCCTACCCTCCGCCAATGGGAGGGCCGCCGCCAATGGCG
ATGGCGGGGCCACCGCCCATGGCGGGACCTCCACCGATGGCGGGACAGTC
CAGTGACGGGTATGCGCAGGCTCAAGCGCGTCCCCAGTATGCGTCACCGC
AGGCGGGATACTACGGCCAACCGTACGGTGGTGCCGGGGCCATGCAGCCG
AGCTTCGGACAGCAGCCATTTGCACAGCCGCCGCCACCGCCAGCCGCTAA
CCAGCAGAGCGCGATGCCGGCGTACCCCAGGCCGCCCCCGAACATGAACG
GCGGCGTTGGCGAAGGTCGCGGCTCATTGCCGTCGCCAGGCGGCTACGCG
TACAAGCCTGCTGGGATGGGGTCCGCGGCTCTTCCTTCCACGGCGTCGCA
AGAAAACGAATCCCGGGGCGGGAGGGGGAGGGGCGGGTATAACGTTTTTA
ACCCGTCCACAGATAGGGTGGTCGCTGCGGATTCCACTTCCAATGCCGTT
TTGTGAGTATGGCCACACAAAAATCGTGCGCGACATGGGCGCACCGCCAA
CGGCTGCCCAGCTGGGTGGTCCCCAAGGACCCGCTGGAGGCGGCGCATCC
TACCCTCCGCCAATGGGAGGGCCGCCGCCAATGGCGATGGCGGGGCCACC
GCCCATGGCGGGACCTCCACCGATGGCGGGACAGTCCAGTGACGGGTATG
CGCAGGCTCAAGCGCGTCCCCAGTATGCGTCACCGCAGGCGGGATACTAC
GGCCAACCGTACGGTGGTGCCGGGGCCATGCAGCCGAGCTTCGGACAGCA
GCCATTTGCACAGCCGCCGCCACCGCCAGCCGCTAACCAGCAGAGCGCGA
TGCCGGCGTACCCCAGGCCGCCCCCGAACATGAACGGCGGCGTTGGCGAA
GGTCGCGGCTCATTGCCGTCGCCAGGCGGCTACGCGTACAAGCCTGCTGG
GATGGGGTCCGCGGCTCTTCCTTCCACGGCGTCGCAAGAAAACGAATCCC
GGGGCGGGAGGGGGAGGGGCGGGTATAACGTTTTTAACCCGTCCACAGAT
AGGGTGGTCGCTGCGGATTCCACTTCCAATGCCGTTTTGTGA
back to top