mRNA_S-latissima_F_contig1017.164.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1017.164.1 vs. uniprot
Match: D8LBL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL4_ECTSI) HSP 1 Score: 280 bits (715), Expect = 6.010e-80 Identity = 179/324 (55.25%), Postives = 212/324 (65.43%), Query Frame = 2
Query: 98 MGLIRPWLKAGLESILQVGANDKQPSHPRCRNRFRKQHVQCIEVDEKRSALKINDTESMVWCFVSTPGMEKFK-NLRNPSFGSLKSKTITIEDWEFSSLSVLCPSFEEKKAKSNGQICILISKFSLLSGERTTTVGYPTDLGEGNRDLRAMLRSLSNPKFLVRALARGQGLTDLRDADGVLMSAPS--LKG--WGGTSPAXXXXXXXERAXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAASPGGARRSPAGGDAPNGVGGVGSSPLPKRPGEPAVDDMSQLSLGMEYEGGLEESQDM-LHTQAPSAGNVFSQEAMDMLPASP 1051
M L+R W+K LE ILQVG N P R R R+QHVQC+EV+E S LKIND E+MVWCFV+ GMEKF + +NP+F SL +KTITI+DWEFSS++VLCP+F+EKKAK+NG ICILI+KF+L GERTTT+G PTDLGEGNR+LRA+ R+LSNPK LVRALARGQGLTDLRD DGV+M+AP L+G WG PA XXXXXX PV ++ G RSPA A G ++ DM+Q SLGM+Y+ G D HTQAPSAGNVFSQE MDMLPASP
Sbjct: 1 MVLVRAWVKGELEGILQVGMN--APPVTSRRIRTRRQHVQCVEVNEGCSGLKINDGETMVWCFVTKQGMEKFLLDGKNPTFASLNNKTITIDDWEFSSINVLCPTFDEKKAKANGHICILINKFALFGGERTTTIGKPTDLGEGNRELRAIWRALSNPKDLVRALARGQGLTDLRDIDGVVMNAPDPELQGLSWGDVEPALMVIPTT----------------VSPXXXXXXPQPKEPVGTSA--GGMRSPA---ADRGX----XXXXXXXXXXESLLDMTQQSLGMDYDDGDFGGGDGDFHTQAPSAGNVFSQEEMDMLPASP 297
BLAST of mRNA_S-latissima_F_contig1017.164.1 vs. uniprot
Match: A0A6H5K6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E2_9PHAE) HSP 1 Score: 278 bits (711), Expect = 3.310e-76 Identity = 171/322 (53.11%), Postives = 203/322 (63.04%), Query Frame = 2
Query: 98 MGLIRPWLKAGLESILQVGANDKQPSHPRCRNRFRKQHVQCIEVDEKRSALKINDTESMVWCFVSTPGMEKFK-NLRNPSFGSLKSKTITIEDWEFSSLSVLCPSFEEKKAKSNGQICILISKFSLLSGERTTTVGYPTDLGEGNRDLRAMLRSLSNPKFLVRALARGQGLTDLRDADGVLMSAPSLKG--WGGTSPAXXXXXXXERAXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAASPGGARRSPAGGDAPNGVGGVGSSPLPKRPGEPAVDDMSQLSLGMEYEGGLEESQDM-LHTQAPSAGNVFSQEAMDMLPASP 1051
M L+R W+K LE ILQ G N P PR R R R+QHVQC+EV+E S LKIND E+MVWCFV+ GMEKF + +NP+F SL +KTITI+DWEFS+++VLCP+F+EKKAK+NG ICILI+KF+L GERTTT+G PTDLGEGNR+LRA+ R+LS PK LVRALARGQGLTDLRD DGV+M+AP +G W PA PV +P G RSPA NG +DDM+Q SLGM+Y+ G D HTQAPSAGNVFSQE MDM PASP
Sbjct: 1 MVLVRAWVKGELEGILQDGMN-APPVTPR-RIRTRRQHVQCVEVNEGCSGLKINDGETMVWCFVTKQGMEKFLLDGKNPTFASLNNKTITIDDWEFSTINVLCPAFDEKKAKANGHICILINKFALFGGERTTTIGKPTDLGEGNRELRAIWRALSIPKDLVRALARGQGLTDLRDIDGVVMNAPDPEGLSWEDVEPALMVRPTT----------------VSPPPPSSQPQPKEPVG--TPAGGMRSPAADRGSNGXXXXXXXXXXXXEAS-LLDDMTQQSLGMDYDDGDFGGGDGDFHTQAPSAGNVFSQEEMDMRPASP 301 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1017.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1017.164.1 >prot_S-latissima_F_contig1017.164.1 ID=prot_S-latissima_F_contig1017.164.1|Name=mRNA_S-latissima_F_contig1017.164.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=817bp MGLIRPWLKAGLESILQVGANDKQPSHPRCRNRFRKQHVQCIEVDEKRSAback to top mRNA from alignment at S-latissima_F_contig1017:56011..66878+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1017.164.1 ID=mRNA_S-latissima_F_contig1017.164.1|Name=mRNA_S-latissima_F_contig1017.164.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=10868bp|location=Sequence derived from alignment at S-latissima_F_contig1017:56011..66878+ (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1017:56011..66878+ >mRNA_S-latissima_F_contig1017.164.1 ID=mRNA_S-latissima_F_contig1017.164.1|Name=mRNA_S-latissima_F_contig1017.164.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=4902bp|location=Sequence derived from alignment at S-latissima_F_contig1017:56011..66878+ (Saccharina latissima SLPER63f female)back to top |