mRNA_S-latissima_F_contig101.95.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig101.95.1
Unique NamemRNA_S-latissima_F_contig101.95.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig101.95.1 vs. uniprot
Match: A0A6H5JIT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT4_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.530e-12
Identity = 71/173 (41.04%), Postives = 82/173 (47.40%), Query Frame = 1 
Query:  184 AEVQFSRDPWPERDLPKASEKAALMFRDRNSKADEAPNRAPPPARLGRGGADPSAVGARLIRGGDCRGXXXXXXXXXXX------RDTSTPYTAPPPPPCTGKKRKRGPGGRT-----SRASAEPCLPPHYVGLVGGLPRDSRHLLARLGHQGYVKVLEELLGRFMYGPNALA 669
            AE++F RDPWPE DLP+ASE+ A +F                   LG+G  D  A  A   RGG    XXXXXXXXXX         T+ P                  G        S    +P  PP Y  L+G LPRDSRHLLARLGH GYVKVLE +L  F+   N  A
Sbjct:  656 AEIEFGRDPWPEEDLPRASEQVARIF-------------------LGQGAGD-RAGAASSNRGGXXXXXXXXXXXXXXGIVASGDGGTNRPXXXXXXXXXXXXXXXXXXGXXXXXXGGSGGDGQP--PPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNGSA 806
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BLAST of mRNA_S-latissima_F_contig101.95.1 vs. uniprot
Match: D8LKV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKV8_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.480e-8
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:  532 PPHYVGLVGGLPRDSRHLLARLGHQGYVKVLEELLGRFMYGPNALA 669
            PP Y  L+G LPRDSRHLLARLGH GYVKVLE +L  F+   N  A
Sbjct:  519 PPRYARLLGQLPRDSRHLLARLGHHGYVKVLEHILQGFLRSSNGSA 564
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig101.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIT4_9PHAE5.530e-1241.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKV8_ECTSI2.480e-865.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig101contigS-latissima_F_contig101:82563..83238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_005730.1
Exons1
Model size677
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.366294-CDS-S-latissima_F_contig101:82562..832371622815368.366294-CDS-S-latissima_F_contig101:82562..83237Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 82563..83237 +
1693924838.375805-CDS-S-latissima_F_contig101:82562..832371693924838.375805-CDS-S-latissima_F_contig101:82562..83237Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 82563..83237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig101.95.1prot_S-latissima_F_contig101.95.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig101 82563..83237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig101.95.1

>prot_S-latissima_F_contig101.95.1 ID=prot_S-latissima_F_contig101.95.1|Name=mRNA_S-latissima_F_contig101.95.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=225bp
LLSRSGERGGPPQNGDNARLPREASKAEEASMRGGAKLTRRETEALAAAA
AMEAAAAAAATAEVQFSRDPWPERDLPKASEKAALMFRDRNSKADEAPNR
APPPARLGRGGADPSAVGARLIRGGDCRGDASGDGSRDVHRDTSTPYTAP
PPPPCTGKKRKRGPGGRTSRASAEPCLPPHYVGLVGGLPRDSRHLLARLG
HQGYVKVLEELLGRFMYGPNALAID
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mRNA from alignment at S-latissima_F_contig101:82563..83238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig101.95.1 ID=mRNA_S-latissima_F_contig101.95.1|Name=mRNA_S-latissima_F_contig101.95.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=676bp|location=Sequence derived from alignment at S-latissima_F_contig101:82563..83238+ (Saccharina latissima SLPER63f female)
CTCCTCTCGCGGTCGGGCGAGCGAGGTGGACCGCCTCAAAACGGCGACAA
CGCACGGCTCCCTCGGGAAGCATCGAAAGCCGAGGAAGCATCAATGCGGG
GAGGGGCGAAGCTGACTCGCAGGGAGACTGAGGCACTTGCGGCGGCGGCA
GCAATGGAGGCGGCGGCAGCGGCGGCGGCGACAGCGGAAGTGCAATTCAG
CCGCGACCCATGGCCTGAGAGGGACCTACCGAAGGCAAGCGAGAAGGCCG
CTCTTATGTTTCGCGACCGCAACAGCAAGGCTGACGAGGCTCCGAACCGC
GCACCGCCGCCCGCAAGACTCGGACGCGGGGGTGCTGATCCCAGTGCTGT
CGGCGCTCGTTTAATACGCGGCGGCGACTGCCGAGGCGACGCTAGCGGCG
ACGGCAGCAGAGACGTCCACCGGGATACGAGTACTCCATACACGGCTCCT
CCTCCGCCTCCCTGCACGGGTAAAAAACGGAAGCGGGGCCCCGGGGGGCG
GACATCTCGCGCATCGGCGGAGCCTTGCCTGCCGCCTCACTATGTCGGGT
TGGTCGGTGGGCTCCCGCGGGACTCCCGCCATCTCCTCGCGCGCCTAGGG
CACCAGGGGTACGTGAAGGTACTCGAGGAGCTTCTGGGGCGGTTTATGTA
CGGCCCGAACGCCCTCGCGATCGACG
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Coding sequence (CDS) from alignment at S-latissima_F_contig101:82563..83238+

>mRNA_S-latissima_F_contig101.95.1 ID=mRNA_S-latissima_F_contig101.95.1|Name=mRNA_S-latissima_F_contig101.95.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1350bp|location=Sequence derived from alignment at S-latissima_F_contig101:82563..83238+ (Saccharina latissima SLPER63f female)
CTCCTCTCGCGGTCGGGCGAGCGAGGTGGACCGCCTCAAAACGGCGACAA
CGCACGGCTCCCTCGGGAAGCATCGAAAGCCGAGGAAGCATCAATGCGGG
GAGGGGCGAAGCTGACTCGCAGGGAGACTGAGGCACTTGCGGCGGCGGCA
GCAATGGAGGCGGCGGCAGCGGCGGCGGCGACAGCGGAAGTGCAATTCAG
CCGCGACCCATGGCCTGAGAGGGACCTACCGAAGGCAAGCGAGAAGGCCG
CTCTTATGTTTCGCGACCGCAACAGCAAGGCTGACGAGGCTCCGAACCGC
GCACCGCCGCCCGCAAGACTCGGACGCGGGGGTGCTGATCCCAGTGCTGT
CGGCGCTCGTTTAATACGCGGCGGCGACTGCCGAGGCGACGCTAGCGGCG
ACGGCAGCAGAGACGTCCACCGGGATACGAGTACTCCATACACGGCTCCT
CCTCCGCCTCCCTGCACGGGTAAAAAACGGAAGCGGGGCCCCGGGGGGCG
GACATCTCGCGCATCGGCGGAGCCTTGCCTGCCGCCTCACTATGTCGGGT
TGGTCGGTGGGCTCCCGCGGGACTCCCGCCATCTCCTCGCGCGCCTAGGG
CACCAGGGGTACGTGAAGGTACTCGAGGAGCTTCTGGGGCGGTTTATGTA
CGGCCCGAACGCCCTCGCGATCGACCTCCTCTCGCGGTCGGGCGAGCGAG
GTGGACCGCCTCAAAACGGCGACAACGCACGGCTCCCTCGGGAAGCATCG
AAAGCCGAGGAAGCATCAATGCGGGGAGGGGCGAAGCTGACTCGCAGGGA
GACTGAGGCACTTGCGGCGGCGGCAGCAATGGAGGCGGCGGCAGCGGCGG
CGGCGACAGCGGAAGTGCAATTCAGCCGCGACCCATGGCCTGAGAGGGAC
CTACCGAAGGCAAGCGAGAAGGCCGCTCTTATGTTTCGCGACCGCAACAG
CAAGGCTGACGAGGCTCCGAACCGCGCACCGCCGCCCGCAAGACTCGGAC
GCGGGGGTGCTGATCCCAGTGCTGTCGGCGCTCGTTTAATACGCGGCGGC
GACTGCCGAGGCGACGCTAGCGGCGACGGCAGCAGAGACGTCCACCGGGA
TACGAGTACTCCATACACGGCTCCTCCTCCGCCTCCCTGCACGGGTAAAA
AACGGAAGCGGGGCCCCGGGGGGCGGACATCTCGCGCATCGGCGGAGCCT
TGCCTGCCGCCTCACTATGTCGGGTTGGTCGGTGGGCTCCCGCGGGACTC
CCGCCATCTCCTCGCGCGCCTAGGGCACCAGGGGTACGTGAAGGTACTCG
AGGAGCTTCTGGGGCGGTTTATGTACGGCCCGAACGCCCTCGCGATCGAC
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