mRNA_S-latissima_F_contig101.104.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig101.104.1
Unique NamemRNA_S-latissima_F_contig101.104.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: D7G2N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N4_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 3.400e-83
Identity = 131/189 (69.31%), Postives = 151/189 (79.89%), Query Frame = 1 
Query:   13 ASSVGDRRRSRIEDDLTALKVRKLAQQKELAEEFNTILTRQGGLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSS---------APRPPGPSLASLSEWFAAYGEPGPPATVGVLTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR 552
            + S  + + SR +D+LTALKVRKL QQ+ELA+EFN ILTRQGGLNDQ  QTCKNLEYAIAIATRPG IEYY P+EEA RIV NG+L VLT K+  LQRDIDQVE DIQQA  ++SS         + RPP    +SL+EWFAAYGEP P A+ G++TNFEESPKIYGGTNHHRAFKTQATVM+KGR+TR
Sbjct:    2 SGSTSNHQGSRRQDELTALKVRKLGQQEELAKEFNFILTRQGGLNDQARQTCKNLEYAIAIATRPGQIEYYRPSEEAARIVANGELTVLTNKIARLQRDIDQVEQDIQQADVVASSTAAAAQAQPSARPP---CSSLAEWFAAYGEPAPSASSGLMTNFEESPKIYGGTNHHRAFKTQATVMKKGRITR 187
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: A0A7S2UW48_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW48_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.680e-47
Identity = 81/165 (49.09%), Postives = 109/165 (66.06%), Query Frame = 1 
Query:   52 DDLTALKVRKLAQQKELAEEFNTILTRQGGLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSSAPRPPGPSLASLSEWFAAYGEPGPPATVGVLTNFEESPKIYGGTNHHRAFKTQATVMRKGRV 546
            + L   K  KLAQQK L++EFN ILTR+GGLN+ + Q CKNLE A+A+A RPG  EYY    E +RI+   DL +LT K+  +QR++DQ++ +I+Q      S   PP   + +L +WFA YG P PP   G L+ FE S K+YGGT HHRAFK+Q+  ++KG V
Sbjct:   24 EQLYEQKASKLAQQKNLSDEFNEILTREGGLNEVSRQACKNLEAAVAVAQRPGYFEYYQAPAEVQRIIAADDLKLLTNKINQIQRELDQIDSEIEQLSKQHYSQRNPP--QVNNLGQWFAVYGTPKPPPN-GTLSVFEPSDKVYGGTQHHRAFKSQSRSLKKGTV 185
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: A0A7S2SKE1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKE1_9STRA)

HSP 1 Score: 151 bits (382), Expect = 3.110e-43
Identity = 77/170 (45.29%), Postives = 109/170 (64.12%), Query Frame = 1 
Query:   52 DDLTALKVRKLAQQKELAEEFNTILTRQGGLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSSAPRPPGPSLA---SLSEWFAAYGEPGPPATVGVLTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR 552
            D L A KV KL QQK + +E N ILTR+ GLND +H+T +NLE A+ ++ +PG  EY+    E +  V N DL  LT+K+  +Q +IDQ++ +I+       S   P  P+L    SL +W A +G P  P + G  + F+++PKIYGGTNHHRAFKTQ+  M++GR+TR
Sbjct:   26 DGLLAAKVAKLDQQKRVTDEMNAILTRENGLNDTSHKTMRNLEVAVVVSKQPGFFEYFQAPSEVQAAVRNNDLVQLTKKVKRIQSEIDQIDAEIEHL----RSKQTPAAPALGEMRSLKQWLAHHGAPKQPPS-GYFSTFQDAPKIYGGTNHHRAFKTQSMTMKRGRLTR 190
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: A0A812TWU8_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TWU8_SYMMI)

HSP 1 Score: 142 bits (359), Expect = 6.130e-40
Identity = 80/171 (46.78%), Postives = 107/171 (62.57%), Query Frame = 1 
Query:   58 LTAL---KVRKLAQQKELAEEFNTILTRQGGLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSSAPRPPGP--SLASLSEWFAAYGEPGPPATVGV-LTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR 552
            LTAL   KV+KL +QK L++  N +LT++GGLND +    KNL  AIA+A +PG  EYY    E R I ++  L+ L + +G + R+IDQ+  +I          P PP    SL S+S+WF  YG P     +   +T F+ SPKIYGGTNHHRAFKTQA+ M+KGRVT+
Sbjct:    9 LTALYERKVQKLNEQKALSDRMNELLTKKGGLNDNSKNVRKNLSAAIAVAKQPGYFEYYETPSEVREIEDSKILSSLVKSLGKVHREIDQINSEIAHH---HQKGPEPPKAESSLTSMSQWFETYGRPENTHCLEERMTTFQPSPKIYGGTNHHRAFKTQASNMKKGRVTK 176
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: A0A7S2FSZ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSZ0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.100e-39
Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 1 
Query:   70 KVRKLAQQKELAEEFNTILTRQG--GLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSSAPRPPGPSLASLSEWFAAYGEPGPPATVGVLTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR 552
            K+ KL +QK +A+E N +LTR G  GLN+ + +T KNLE A+ ++ RPG  EYY P  E   I +NG++  L +K+  L  +I Q++ + Q   A+        GP L SL++W A YG    P   G  + F ++PKIYGGT HHRAFKTQ+  M++GR+ R
Sbjct:   10 KMAKLKEQKRVADEINELLTRPGEDGLNESSRKTMKNLEVAVVVSKRPGFFEYYKPAPEVEAIQKNGEIQHLVKKLNRLGGEIAQLDAESQNIEAMRKPLKMSSGPELTSLAQWNARYGTVEKPVPSGFYSGFNDAPKIYGGTEHHRAFKTQSRTMKRGRLIR 172
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: A0A067CQ53_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ53_SAPPC)

HSP 1 Score: 133 bits (335), Expect = 1.660e-36
Identity = 75/165 (45.45%), Postives = 104/165 (63.03%), Query Frame = 1 
Query:   58 LTALKVRKLAQQKELAEEFNTILTRQGGLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSSAPRPPGPSLASLSEWFAAYGEPGPPATVGVLTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR 552
            L A K   L  QKE A+ F+ +LT   GLN+ + +TCKNLE AI  + +PG   YY   + A+ IV+NG+L  L   +  LQ+ IDQV+ +I+   A  SSAP P    + +L +WF+ YG P  P T GVLT+F   PK+YGGT H+ AFK+Q+  M+KGR+T+
Sbjct:    4 LRAKKEELLFAQKERADRFHELLT---GLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVAKAIVKNGELRKLQSAIVQLQQKIDQVDAEIEVQAA-KSSAPAPA--EVQTLKQWFSTYGTP-KPVTSGVLTSFAADPKVYGGTEHYSAFKSQSLTMKKGRLTK 161
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: A0A1V9ZEM2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEM2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.640e-36
Identity = 68/167 (40.72%), Postives = 104/167 (62.28%), Query Frame = 1 
Query:   52 DDLTALKVRKLAQQKELAEEFNTILTRQGGLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSSAPRPPGPSLASLSEWFAAYGEPGPPATVGVLTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR 552
            D+L A K   L  Q+E A+ F+ +L   GGLN+ + +TCKNLE AI  + +PG   YY   +  + +V+NG+L  L   +  LQ+ IDQ++ ++    A +++AP      + SL +WF+ YG P  P T G+LT+F   PK+YGGT H+ AFK+Q+  M+KGR+T+
Sbjct:    2 DELRAKKAELLLAQQEKADRFHELLVGPGGLNEASRKTCKNLEAAITASKKPGYFLYYEQPDVVKAVVKNGELRKLQGVIVQLQQKIDQIDAELANHAAKAAAAPVTN--EVQSLKQWFSTYGTP-KPVTSGMLTSFATDPKVYGGTEHYSAFKSQSLTMKKGRLTK 165
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: A0A485KK74_9STRA (Aste57867_8395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK74_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.240e-34
Identity = 67/169 (39.64%), Postives = 104/169 (61.54%), Query Frame = 1 
Query:   46 IEDDLTALKVRKLAQQKELAEEFNTILTRQGGLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSSAPRPPGPSLASLSEWFAAYGEPGPPATVGVLTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR 552
            I +DL   K   L  Q+E A++FN +L   GGLN+ + +TCKNLE AI+ + +PG   YY   + A+ IV+NG+L  +   +  LQ+ I+QV+ +I+      +S        + +L +W A YG P  P + G+LT+F  + K+YGGT H+ AFK+Q+T M+KGR+T+
Sbjct:   11 IMEDLQKKKEELLHAQREKADKFNEVLNAPGGLNEVSRKTCKNLEAAISASKKPGYFMYYEQPDVAKAIVKNGELKKIHAAVMLLQQKIEQVDVEIENQKKTLASGVGGGESEIQNLKQWLATYGAP-KPVSSGMLTSFNSNAKVYGGTEHYSAFKSQSTTMKKGRLTK 178
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: A0A6G0X4V5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4V5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 7.440e-34
Identity = 68/172 (39.53%), Postives = 105/172 (61.05%), Query Frame = 1 
Query:   52 DDLTALKVRKLAQQKELAEEFNTILTRQGGLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSSAPRPPGPS-----LASLSEWFAAYGEPGPPATVGVLTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR 552
            ++L   K   L  Q++ A++F+ IL+  GGLN+ + +TCKNLE AI+ + +PG   Y+   E  + I++NG+L  L   +  L + I+QV+ +I    A  + A   PG +     + +  +WF  YG P  P T GVLT+F  +PK+YGGT H+ AFKTQ+T M+KGR+T+
Sbjct:    2 EELQKKKEELLHAQRDKADKFHAILSGPGGLNETSRKTCKNLEAAISASKKPGYFSYFDQPEVVKAIIKNGELRKLQTAILQLHQKIEQVDVEI----ANHTKAGNVPGAAGTASDIQTFKQWFTTYGTP-KPVTSGVLTSFSANPKVYGGTEHYSAFKTQSTTMKKGRLTK 168
[Close]
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Match: A0A1V9ZCG4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCG4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.930e-33
Identity = 68/168 (40.48%), Postives = 100/168 (59.52%), Query Frame = 1 
Query:   52 DDLTALKVRKLAQQKELAEEFNTILTRQGGLNDQTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHLQRDIDQVEHDIQQAVAISSSAPRPPGPS-LASLSEWFAAYGEPGPPATVGVLTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR 552
            ++L A K   L  QKE A++FN IL     LN+ + +TCKNLE AI  + +PG   YY   +  + +V+NG+L  L   +  LQ+ IDQ++ ++      +S        S + SL +WFA YG P  P T G+LT+F   PK+YGGT H+ AFK+Q+  M+KGR+T+
Sbjct:    2 EELRAKKTELLHAQKEKADKFNEILE---SLNEASRKTCKNLEAAITASKKPGYFSYYEQPDVVKAVVKNGELRKLQNAIVQLQQKIDQIDGELMNQQGTNSIENGGQSDSNVQSLKQWFATYGTP-KPVTSGMLTSFVNDPKVYGGTEHYAAFKSQSLTMKKGRLTK 165
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig101.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G2N4_ECTSI3.400e-8369.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UW48_9STRA6.680e-4749.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SKE1_9STRA3.110e-4345.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812TWU8_SYMMI6.130e-4046.78Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7S2FSZ0_9STRA3.100e-3942.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067CQ53_SAPPC1.660e-3645.45Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZEM2_9STRA2.640e-3640.72Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KK74_9STRA1.240e-3439.64Aste57867_8395 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0X4V5_9STRA7.440e-3439.53Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZCG4_9STRA1.930e-3340.48Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig101contigS-latissima_F_contig101:344397..349343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.1
Seed ortholog evalue1e-64
Seed eggNOG ortholog2880.D7G2N4
Hectar predicted targeting categoryother localisation
EggNOG OGs2C2XI@1,2S2SM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002870.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size555
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig101.104.1prot_S-latissima_F_contig101.104.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig101 344397..349343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815370.3223512-CDS-S-latissima_F_contig101:344396..3444461622815370.3223512-CDS-S-latissima_F_contig101:344396..344446Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 344397..344446 -
1693924841.7232122-CDS-S-latissima_F_contig101:344396..3444461693924841.7232122-CDS-S-latissima_F_contig101:344396..344446Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 344397..344446 -
1622815370.3321414-CDS-S-latissima_F_contig101:345534..3457211622815370.3321414-CDS-S-latissima_F_contig101:345534..345721Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 345535..345721 -
1693924841.7491577-CDS-S-latissima_F_contig101:345534..3457211693924841.7491577-CDS-S-latissima_F_contig101:345534..345721Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 345535..345721 -
1622815370.3429596-CDS-S-latissima_F_contig101:347039..3472221622815370.3429596-CDS-S-latissima_F_contig101:347039..347222Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 347040..347222 -
1693924841.7673295-CDS-S-latissima_F_contig101:347039..3472221693924841.7673295-CDS-S-latissima_F_contig101:347039..347222Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 347040..347222 -
1622815370.3812826-CDS-S-latissima_F_contig101:349208..3493431622815370.3812826-CDS-S-latissima_F_contig101:349208..349343Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 349209..349343 -
1693924841.7826574-CDS-S-latissima_F_contig101:349208..3493431693924841.7826574-CDS-S-latissima_F_contig101:349208..349343Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 349209..349343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig101.104.1

>prot_S-latissima_F_contig101.104.1 ID=prot_S-latissima_F_contig101.104.1|Name=mRNA_S-latissima_F_contig101.104.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=185bp
MADAASSVGDRRRSRIEDDLTALKVRKLAQQKELAEEFNTILTRQGGLND
QTHQTCKNLEYAIAIATRPGAIEYYHPTEEARRIVENGDLAVLTRKMGHL
QRDIDQVEHDIQQAVAISSSAPRPPGPSLASLSEWFAAYGEPGPPATVGV
LTNFEESPKIYGGTNHHRAFKTQATVMRKGRVTR*
back to top

mRNA from alignment at S-latissima_F_contig101:344397..349343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig101.104.1 ID=mRNA_S-latissima_F_contig101.104.1|Name=mRNA_S-latissima_F_contig101.104.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=4947bp|location=Sequence derived from alignment at S-latissima_F_contig101:344397..349343- (Saccharina latissima SLPER63f female)
ATGGCGGACGCTGCCTCCTCCGTGGGCGATCGCCGGCGAAGTCGGATAGA
GGACGACCTTACCGCGCTGAAGGTTCGCAAGCTAGCGCAGCAGAAGGAGC
TCGCCGAGGAGTTCAACACTATTCTTACACGTCAGGTGTGAATCAAGCAG
GGTGGATGAATCAAACATGATGTGCGGTACAGCTGAATTATTAGACCGCA
CGCGTTAATAATTAGGCCGCAGGCGGGGCAGAGCCGACTCAGTACGCACG
ACTGTATTATACAGTACCAGGAAGTAGGCACAGTGTCTGCACAGCAGTAC
GAGTTCCTATTCAGCGTGAAGTCGGCAGACGATACGTAAGGTCATCAGCC
TCGGACACTTTGGGCGCTTTCGAAGACAAGATGAATTCCGATTCGAGTAC
GTCCAGAGGCCGTGGTTGCTACGCCCAACCTCAGGCTTTCCATTTTTTTT
CGCAAGCAGTTGATGTACACACCAATGAATGGGCGCTTGCTTGTGCTTTC
TAATATTATGGTACGCCCGTAGTCGTGATGTGTACACAGGAAGTTTATTG
TTGTGACCCTTACGAGTGTTACGTACGAGTGCTACATGCTGTTTTTGTCA
CACAAGTACTTGAACCAAACCTTTGTCCGACCAAGTACCTGAACAACCCC
CCCTCCCCCCTATGTACTTGGCCCCGCTTCGACAAAATGGCTTCATAAAA
ATGTCCACACCAATTCCTCACATTGGGTTAGACCTTGTACTTCGTACATG
CATACCTTATACGTACGCGATACGTATCAGGTACGTACGCACGTGATACT
TATATCACAGGTACGAATGTATGTAGGCGTACGTAGACGTGCGAATATAA
CGCCATGTTAAGGCATTAGTTAACCTTTTACCAGTAGCCCAACGGACTAA
TGCCTTAACAAATGGCGTCGTCGGCAGGACATGGGTACCAATTGCCTACC
CAATCTAAGCCTTATAACACTCTCCCCCCCTGGAACGGACCGGATATACG
GGTCGACGCGTGTGACCAGCACGCGGTTCCTGTTTATGGGGATCCAGAAG
TGTTTTCAGATTCTTGACATGAGGAAATTCGCTTTTCTTTAAAAAGCGTT
TTCATGGTGGTGGTGAGATTCGAACTCACGACCACTACGACCCATGTCCT
ACCGACGACGCCATTTGTTAAGGCATTAGTCCGTTGGGCTACTGGTAAAA
GGTTAACCAATTGCCTACCCAATCTAAGCCTTATAACAGCCACTTACCAG
CACAGAAAGCCAAGCATGGCTACGTACGGTGTACGACGCACAACGCACAA
GGTTCATATGTCACAATGTCGCAATACAACGAACGGTGATGATGTATTGT
TAATCCTGTGCTGTGTTCGGCGAGTTTATCGTGGTGCGTATTAGGGCAAT
ACGTTGACAGTAGCAGCTGTTGCGCTGTTACGCTGGGCCAACAGTTGGGT
CTGGGTTGCGTTTGTGCGTAACAGATGCCGAAAGGCGTGTTGCGCGGACC
ATTTGGTCAATCAACCAACTGACCAGTCAACCAACTGACCAATCAATTAA
CCAACCGCGGCGCAACTTGTTTCGCCGGAGGCGATTTGTTTTTTGCGTGT
GTCTTTTTTACCGGAGGCGAGAAAAAAGGTTGAGGCGCCTTTTTACGGTC
ACTACTGTCGTAGGCGCAAAAAAATGTTTTTAGCCGTCTGAACCCACTTT
GTCAAGTGTGTTTCGGGCATATATTCACACATATATGGCATGTTTTGATC
TCCGGCGGCCTCTAAGCCCGGTGCGCATTCCGGCGGCTCTCCGGGGACCT
CCAGAGGCGCTTCGGGGGGCCAGGGGGGGGGGCTTACACGCCTGCAGCTC
GTGTTGCACTGCGCGCAATACGCCTCCCGGCTCCTGTTGCAACAGGTTTT
CCGGAGCCCTAATTAATGCCCTGGTGCGTATGATACGAGTGCTATACAAC
ACTAGGGTACCTAAAAGCGCCAGAACTTTCTACGTACGATATTATGCATG
GCGTACTTTTATGTTGCAAGCTATGACACAAACTTGATGTGTCGCCCACC
AAGCACACCTGATGATGTTGTGCACGCGTATTTAATGCACACAACAAACA
ACTTGTCCCCCCCCCCCCCAGGGCGGTTTGAACGATCAAACGCATCAGAC
CTGCAAGAACCTCGAGTACGCCATTGCGATCGCCACTCGCCCAGGCGCCA
TCGAGTACTACCACCCGACGGAGGAAGCGAGGCGTATCGTAGAAAACGGA
GACCTTGCGGTGCTTACCAGGAAAATGGGCCATTTACAGCGAGATATTGA
CCAGGTACGGCACGTTATGTATATTTCGTGTATAGGCATGAACGTTACTA
TAAATAGGACGATAGCCCATTCCTAAAAATAGGACGATAGCCCATTTACA
GCGAGATATCGATCAGGTACCGTATAATGCTACACCGAAGTATGTACCCG
TGGTATGTACCCCATTATGTAGTGTATATAGCAAAAGATGGTCCAATTAC
AGCGGGATATCGACCAGGTACATCAGAATACCTTGTCAGGGATCGCTGTA
CGTGTCCCCGAAATGGAGTGGTAGCAGAGGCTAGCGCTGGAGCTGGTGGG
CACCCAGGCTGGTGCTGATGCGCTTCGTGTAAGACAGAAGACCATGGGGG
TCCAAAACTGGCTGATAACAGTAAACTTCTTGCTGGAACCTACGTTGATG
CTGTGGTCAGCGTTGAGGAGTGACAGCGTGGGGGCTCCCTCCCATGTCAC
AACGCCTACGTAGAGCTTTCTGGGCTGTTGTCCTGCAACCGTAGCATCTA
GACCTTTGTCTCGTGACAACGGTCTAGAAGCACGCGCTGCTTTCGAACAA
ACTGTTTAGTCTCGCCGCATTATTCCACAAGGCTCCGGTTCAACTACGAA
ACCGTCCGTGACCCTGGTGTACATACACTATCACTCAGGGTAGCCACCGA
CCTACATCGTTCATGGAAGTCATATGTGCGCGCACCCCCGTATAGCACGC
GCGATTAAAATATTTACACGCAGCTTGCAAATAAATATATGCCTGGTATA
AGCACTCTGGCCGTAAATATAATCCCCGTTTTGGAATCTGATGTCAGTAT
CAAACGTTGGTTATATTTCCGGCCACCAGAAGAGAGGTATGTATGAGTTT
CGACGAAATGTTCGAGCTTTTTACAGCACACCTACCTGTGGTGTCTTTTT
TGTTTGTTTATTTGTTTTTTCACTTTTTTGTTTTTGTTGCAAGAAACACC
ACAACCTGCGCGCAAGCAACCCCCATCGCGTATCACACCACAGGCACATT
TAAAACTCACCCCACGGTAGGGTTATATAGGGGTTGCAGTTAGTTTGTTC
CTTCTGAAGCAATTTTTTTTACCGATCGAGCTCCTCAAGGGAACAACACC
ATTTATTGACAGCAGTATATGATATTACCTTAACGGGTGCCTTTGTTTTA
GAACTACGTAACGCTTAGAAATGTTGGTCGGGGTTGCGTGAACGAACAGC
TTCGAAGTCATGTTTCGGGTGAGACATGTGAGGAGCTCAGAAAATAATAA
GGCACCACCCTTATAAGGCATTGCTCCATTTTACCCGCGCGCGTGCACAC
CCCACTTGGTTACATGTCGCAGGTTGAGCACGACATCCAGCAGGCCGTCG
CCATCTCGTCGAGCGCCCCTCGCCCCCCGGGACCCTCGCTTGCGAGTCTC
TCGGAGTGGTTCGCCGCGTACGGCGAGCCCGGGCCGCCGGCCACCGTCGG
CGTCCTGACGAACTTCGAGGAGAGCCCCAAGATTTACGGGGGTACCAACC
ACCACAGAGGTACGCGATATGTGATATAATGACGCTTGCTACGGTAGACA
TAGGGGTTTCTATAGCACATGCATGTTTCTACACCTCGGACAGACCATGA
TCTACGTACGTACAGTAGGGGTCCCCCAGTAAGGCGGTGGTGTGCCTTTA
TAGAGCAATATGACCGCCTTGTAGAGGGAAGCCGCCTTATTCATTCCAGG
TTATGAGTGCAATTTCTCCAGTCGCGCCAAACGATTTTGACCGCCTTATA
TCGGGATACCGCCTTATATCGGGATACCGCCTTGTATCGGGATACCGCCT
TGTGGGGGGAGGACCTCTACTGTACGTAGATCATTTACGTAGTTCGTCAC
CTGCCGTTGTGAGGGGTTGTGCAGGATCTGCATACATAGGACAGATCAAG
CCCAGAGGAAACATTGTGCTACGTAGGTCATGCAGATCATTGTACGTGTC
CCACCCGGCAACATGAGCTATCATACCATACCCACGCCTCTTGGGTGAAA
ACCCGACGTTCTCCGTCCCGGCGTTGTAGGTATGCGAGGGTCTATGGTCA
TGCATGCGACTAAGGCCATGCATGGCATGAGTACACCCCCCCCACAGGCG
GTTCTTAGCAGGATGCAGCTCACCCTCCATGCGACTCGCCCAATACCTCA
CAGCGCTTCGTGTTTGATGCAAGCAATGTCTGCCTGGTTGGTGAAAACCC
AACGTGCTCCGTCCCGGCATTGTAGGGATGCGAGGGTCTATGGTCATACG
ACTACGGCCGTGCACGACATGAGTACCCCCCCCCCCTACCCGCACCCCCA
ACCCCTCACCCTACCCCCCAACCCCACCCCCACTCCCCCCCCTGTCAGCC
TTGTTTCCCGATCTTCGTCAAAACGCTGCTGACGTAAGAATAACGTGCAG
CCCCGATATTTCGGGTTTGATTTTCTACACAGCCATCGCCGGTGTATTCT
TCTACTTCAAAGTATTTAAACATGATACGAGTACATTGATTAATTGATAA
TGCTCTCACATCGAAACCCACTTCCCCCCCCCCCCCCGAACCGCCTTCCT
GCCATGTCCAACACTCCCCTGTGTTTCCTCTTCTGTTGCGCCGTCAGCGT
TCAAGACCCAGGCTACGGTGATGAGGAAAGGACGAGTGACGCGGTAG
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig101:344397..349343-

>mRNA_S-latissima_F_contig101.104.1 ID=mRNA_S-latissima_F_contig101.104.1|Name=mRNA_S-latissima_F_contig101.104.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1110bp|location=Sequence derived from alignment at S-latissima_F_contig101:344397..349343- (Saccharina latissima SLPER63f female)
ATGGCGGACGCTGCCTCCTCCGTGGGCGATCGCCGGCGAAGTCGGATAGA
GGACGACCTTACCGCGCTGAAGGTTCGCAAGCTAGCGCAGCAGAAGGAGC
TCGCCGAGGAGTTCAACACTATTCTTACACGTCAGATGGCGGACGCTGCC
TCCTCCGTGGGCGATCGCCGGCGAAGTCGGATAGAGGACGACCTTACCGC
GCTGAAGGTTCGCAAGCTAGCGCAGCAGAAGGAGCTCGCCGAGGAGTTCA
ACACTATTCTTACACGTCAGGGCGGTTTGAACGATCAAACGCATCAGACC
TGCAAGAACCTCGAGTACGCCATTGCGATCGCCACTCGCCCAGGCGCCAT
CGAGTACTACCACCCGACGGAGGAAGCGAGGCGTATCGTAGAAAACGGAG
ACCTTGCGGTGCTTACCAGGAAAATGGGCCATTTACAGCGAGATATTGAC
CAGGGCGGTTTGAACGATCAAACGCATCAGACCTGCAAGAACCTCGAGTA
CGCCATTGCGATCGCCACTCGCCCAGGCGCCATCGAGTACTACCACCCGA
CGGAGGAAGCGAGGCGTATCGTAGAAAACGGAGACCTTGCGGTGCTTACC
AGGAAAATGGGCCATTTACAGCGAGATATTGACCAGGTTGAGCACGACAT
CCAGCAGGCCGTCGCCATCTCGTCGAGCGCCCCTCGCCCCCCGGGACCCT
CGCTTGCGAGTCTCTCGGAGTGGTTCGCCGCGTACGGCGAGCCCGGGCCG
CCGGCCACCGTCGGCGTCCTGACGAACTTCGAGGAGAGCCCCAAGATTTA
CGGGGGTACCAACCACCACAGAGGTTGAGCACGACATCCAGCAGGCCGTC
GCCATCTCGTCGAGCGCCCCTCGCCCCCCGGGACCCTCGCTTGCGAGTCT
CTCGGAGTGGTTCGCCGCGTACGGCGAGCCCGGGCCGCCGGCCACCGTCG
GCGTCCTGACGAACTTCGAGGAGAGCCCCAAGATTTACGGGGGTACCAAC
CACCACAGAGCGTTCAAGACCCAGGCTACGGTGATGAGGAAAGGACGAGT
GACGCGGTAGCGTTCAAGACCCAGGCTACGGTGATGAGGAAAGGACGAGT
GACGCGGTAG
back to top