mRNA_S-latissima_F_contig1005.66.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1005.66.1
Unique NamemRNA_S-latissima_F_contig1005.66.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1005.66.1 vs. uniprot
Match: D7G5J3_ECTSI (PPIase cyclophilin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5J3_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.080e-20
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:   13 QATIAGCGLVKRNSAAMETESSGWGGEDSGDGFRADAMRGMRADVREEKAGVSRAVGRSLKAS 201
            +A IAGCGLVKRNSAAMETE +GWGG DSG+ FRA+AMRG+RADVREEKA VSRAVG + K+S
Sbjct:  342 KAVIAGCGLVKRNSAAMETEGAGWGGADSGNSFRANAMRGVRADVREEKAAVSRAVGNAFKSS 404
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1005.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5J3_ECTSI2.080e-2077.78PPIase cyclophilin-type domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1005contigS-latissima_F_contig1005:161631..162144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.8e-18
Seed eggNOG ortholog2880.D7G5J3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0880@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size514
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1005.66.1prot_S-latissima_F_contig1005.66.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1005 161634..161870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.2353983-UTR-S-latissima_F_contig1005:161630..1616331622815365.2353983-UTR-S-latissima_F_contig1005:161630..161633Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1005 161631..161633 +
1693924833.9475505-UTR-S-latissima_F_contig1005:161630..1616331693924833.9475505-UTR-S-latissima_F_contig1005:161630..161633Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1005 161631..161633 +
1622815365.2703383-UTR-S-latissima_F_contig1005:161870..1621441622815365.2703383-UTR-S-latissima_F_contig1005:161870..162144Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1005 161871..162144 +
1693924833.9979482-UTR-S-latissima_F_contig1005:161870..1621441693924833.9979482-UTR-S-latissima_F_contig1005:161870..162144Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1005 161871..162144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.2581155-CDS-S-latissima_F_contig1005:161633..1618701622815365.2581155-CDS-S-latissima_F_contig1005:161633..161870Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1005 161634..161870 +
1693924833.9701216-CDS-S-latissima_F_contig1005:161633..1618701693924833.9701216-CDS-S-latissima_F_contig1005:161633..161870Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1005 161634..161870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1005.66.1

>prot_S-latissima_F_contig1005.66.1 ID=prot_S-latissima_F_contig1005.66.1|Name=mRNA_S-latissima_F_contig1005.66.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=79bp
MKMQATIAGCGLVKRNSAAMETESSGWGGEDSGDGFRADAMRGMRADVRE
EKAGVSRAVGRSLKASSSSGGSGRESDQ*
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mRNA from alignment at S-latissima_F_contig1005:161631..162144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1005.66.1 ID=mRNA_S-latissima_F_contig1005.66.1|Name=mRNA_S-latissima_F_contig1005.66.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=514bp|location=Sequence derived from alignment at S-latissima_F_contig1005:161631..162144+ (Saccharina latissima SLPER63f female)
CACATGAAAATGCAGGCGACGATCGCTGGGTGCGGCCTCGTGAAGAGAAA
CAGCGCGGCCATGGAGACGGAAAGCAGCGGTTGGGGCGGGGAAGACAGCG
GCGACGGCTTCCGGGCCGACGCGATGCGCGGCATGCGAGCGGACGTTCGG
GAAGAGAAGGCCGGCGTCAGCCGAGCCGTGGGGCGCTCGCTAAAGGCTTC
TTCTTCTTCGGGAGGAAGCGGGAGAGAGTCGGACCAGTAGGAGTACGGTA
GCAGATCTACGTGTAGATCTGCACGGCACAGCGGTAGTGCGTTGTTGCTG
CTCTCAAGCCTTTATTTAGTGTAGGTGGCTGCGACGTTTGGTGGTGGTTC
GTTCTCGAGTTTGTTGGAGTGTCTGCACCGCAAGCGTGGCCAGTAGATAG
TGAGTTTTTCCCGGGAAGTTGACCCTTTTATTAGACCCTGTACCCAAGGT
TTTTGTGGGAAAACTACGTACTTTTAGGTGGTAGTGTGGGACTCGTTAGA
GGCTTTTTTCTTCG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1005:161631..162144+

>mRNA_S-latissima_F_contig1005.66.1 ID=mRNA_S-latissima_F_contig1005.66.1|Name=mRNA_S-latissima_F_contig1005.66.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=474bp|location=Sequence derived from alignment at S-latissima_F_contig1005:161631..162144+ (Saccharina latissima SLPER63f female)
ATGAAAATGCAGGCGACGATCGCTGGGTGCGGCCTCGTGAAGAGAAACAG
CGCGGCCATGGAGACGGAAAGCAGCGGTTGGGGCGGGGAAGACAGCGGCG
ACGGCTTCCGGGCCGACGCGATGCGCGGCATGCGAGCGGACGTTCGGGAA
GAGAAGGCCGGCGTCAGCCGAGCCGTGGGGCGCTCGCTAAAGGCTTCTTC
TTCTTCGGGAGGAAGCGGGAGAGAGTCGGACCAGTAGATGAAAATGCAGG
CGACGATCGCTGGGTGCGGCCTCGTGAAGAGAAACAGCGCGGCCATGGAG
ACGGAAAGCAGCGGTTGGGGCGGGGAAGACAGCGGCGACGGCTTCCGGGC
CGACGCGATGCGCGGCATGCGAGCGGACGTTCGGGAAGAGAAGGCCGGCG
TCAGCCGAGCCGTGGGGCGCTCGCTAAAGGCTTCTTCTTCTTCGGGAGGA
AGCGGGAGAGAGTCGGACCAGTAG
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