mRNA_S-latissima_F_contig1004.57.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1004.57.1
Unique NamemRNA_S-latissima_F_contig1004.57.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: D8LJI4_ECTSI (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI4_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 4.620e-95
Identity = 157/220 (71.36%), Postives = 180/220 (81.82%), Query Frame = 1 
Query:   19 AGGLEGVAQSLAHEVVSNPDDWEKRRTALISMQQAVDAVGKS-----GQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNTRFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGARTDARACFAIFNNHWPKRADRIL 663
            AG LE  A SLA EV  NPDDWE+RR AL SMQQA D  GK+     G G   VFTA++WR+L+EPLKHTLNDLRSAIVKEAC+LLEKLS  A N MAALMRDMLNVLLQL+ANGNSVIVGQVDSCMRH+I ++RFPRQLKE+EYTV+NSRS +LRESV +YVLLML  WP  SM+KE  +LESII+LLL+DA+S ARTDARA F +   HWPKRAD++L
Sbjct:    7 AGTLEAAALSLAQEVSGNPDDWERRRKALYSMQQAADDAGKALSAAGGGGEKAVFTAEVWRYLREPLKHTLNDLRSAIVKEACVLLEKLSDAAGNYMAALMRDMLNVLLQLLANGNSVIVGQVDSCMRHIIEHSRFPRQLKEVEYTVRNSRSKDLRESVGAYVLLMLRAWPPASMDKEAGYLESIIALLLRDAASAARTDARASFGMLMEHWPKRADKVL 226
[Close]
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: A0A6H5KBA3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBA3_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 2.950e-79
Identity = 137/187 (73.26%), Postives = 154/187 (82.35%), Query Frame = 1 
Query:   22 GGLEGVAQSLAHEVVSNPDDWEKRRTALISMQQAVDAVGK-----SGQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNTRFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISL 567
            G LE  A SLA EV  NPDDWE+RR AL SMQQAVD  GK     SG G   VFTA++WR+L+EPLKHTLNDLRSAIVKEAC+LLEKLS  A N MAALMRDMLNVLLQL+ANGNSVIVGQVDSCMRH+I ++RFPRQLKE+EYTV+NSRS +LRESV +YVLLML  WP  SM+KE  HLESII++
Sbjct:    8 GTLEAAALSLAQEVSGNPDDWERRRKALYSMQQAVDDAGKALSAASGGGEKAVFTAEVWRYLREPLKHTLNDLRSAIVKEACVLLEKLSDAAGNYMAALMRDMLNVLLQLLANGNSVIVGQVDSCMRHIIEHSRFPRQLKEVEYTVRNSRSKDLRESVGAYVLLMLRAWPPASMDKEAGHLESIIAV 194
[Close]
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: UPI00096B5BFF (LOW QUALITY PROTEIN: CLIP-associating protein n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B5BFF)

HSP 1 Score: 102 bits (254), Expect = 4.800e-21
Identity = 64/208 (30.77%), Postives = 107/208 (51.44%), Query Frame = 1 
Query:   58 EVVSNPD-DWEKRRTALISMQQAVDAVGKSGQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNTRFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGARTDARACFAIFNNHWPKRADRILAAAEP 678
            +++S+P+ DW KR  AL  ++  V A    G      F   L + L+ PL+ T+ DLRS +V+EAC+ +  L+    N        +L  L+ L+ N   V+       +R +I NT  PR ++ +      S+S ++R S   ++ LML TWP   +E+ V  L+  +   + DA S AR  +R  F  F +H+P+ A+ +L + +P
Sbjct:  330 DIISDPNKDWNKRADALKKIRSLVMA----GATNYDEFHTGL-KSLEIPLQGTIKDLRSQVVREACITIAFLALKLGNKFDKAAELLLQPLINLIQNSAKVMATAGQVTVRFIIQNTHSPRLIQPITSNAMTSKSKDIRRSCCEFIELMLTTWPTHPLERHVAALQEAVKKGIADADSEARVISRRAFKGFKDHFPENAEVLLQSLDP 532
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BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: A0A2A4K157_HELVI (Uncharacterized protein n=16 Tax=Noctuidae TaxID=7100 RepID=A0A2A4K157_HELVI)

HSP 1 Score: 99.8 bits (247), Expect = 4.070e-20
Identity = 61/214 (28.50%), Postives = 107/214 (50.00%), Query Frame = 1 
Query:   25 GLEGVAQSLAHEVVSNPDDWEKRRTALISMQQAVDAVGKSGQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNTRFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGARTDARACFAIFNNHWPKRADRILA 666
            GL+ + +  A  +     DWEKR  AL  ++  + A   + Q  PT F A L + L  P    + DLRS +V+EAC+ +  ++    N +      +L  L+ L+ N   V+      C+R+++S    PR L  +   +  ++S  +R +++  ++LML  WPA ++EK+   +   I     DA S  RT  R  +A +  H+P+ A+++ A
Sbjct:  344 GLDDLCRHAAALLGDRAADWEKRVDALKKIRSLLTA--NAHQQYPTEFAAHL-KDLSVPFLVVIKDLRSQVVREACITIAHMAKVLRNKIDQFSLYILQELINLIQNAAKVVSSAGTVCVRYIVSYVHSPRLLPVIVTNLTTNKSKEIRSTLSEVLVLMLEKWPAQTIEKQQAAVRDAIRRACVDADSTCRTYGRRAYAAYKRHFPEDAEQLFA 554
[Close]
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: A0A2D4C9E0_PYTIN (CAP-Gly domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9E0_PYTIN)

HSP 1 Score: 96.3 bits (238), Expect = 4.210e-19
Identity = 70/212 (33.02%), Postives = 110/212 (51.89%), Query Frame = 1 
Query:   31 EGVAQSLA---HEVVSNPDDWEKRRTALISMQQAVDAVGKSGQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNT--RFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGARTDARACFAIFNNHWPKRA 651
            + +A +LA     +  N D+W +R  AL+ ++Q  +A+  +   G  V  A LWR LK PLK  L DLRS IVKE C++L  ++    ++MA  +R++L  L+++  +GN V       C+  +++    R P  L+ +  T+ +S++  +R S  S   L L TW     + +V  LE  +   L D SS  RT A   F  F   +PKRA
Sbjct:    4 DALATALAGAMDRIARNGDNWVERMHALVDIRQRFEALQDADDAGALVDAA-LWRSLK-PLKGMLQDLRSQIVKEVCVVLTTMALATKDAMAPFLREVLPTLVEVRGSGNKVCGSYCAECIDALVALVVVRGP-TLRFLVDTLVDSKNKLIRLSCISASRLTLLTWNTVLDKTDVQQLERALKAALNDPSSTCRTQAYEFFVAFQQAFPKRA 212
[Close]
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: A0A7E5W8E6_TRINI (CLIP-associating protein isoform X1 n=7 Tax=Noctuidae TaxID=7100 RepID=A0A7E5W8E6_TRINI)

HSP 1 Score: 96.7 bits (239), Expect = 4.650e-19
Identity = 59/214 (27.57%), Postives = 106/214 (49.53%), Query Frame = 1 
Query:   25 GLEGVAQSLAHEVVSNPDDWEKRRTALISMQQAVDAVGKSGQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNTRFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGARTDARACFAIFNNHWPKRADRILA 666
            GL+ + +  A  +     DWEKR  AL  ++  + A   + Q  P+ F A L + L  P    + DLRS +V+EAC+ +  ++    N +      ++  L+ L+ N   V+      C+R+++S    PR L  +   +  ++S  +R +++  ++LML  WPA ++EK+   +   I     DA S  RT  R  +A +  H+P+ A+ + A
Sbjct:  345 GLDDLCRHAAALLGDRAADWEKRVDALKKIRSLLTA--NAHQQYPSEFAAHL-KDLSVPFLVVIKDLRSQVVREACITIAHMAKVLRNKIDQFSLYIMQELINLIQNAAKVVSSAGTVCVRYIVSYVHSPRLLPVIVTNLTTNKSKEIRSTLSEVLVLMLEKWPAQTIEKQQASVRDAIRRACVDADSTCRTFGRRAYAAYKRHFPEDAELLFA 555
[Close]
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: A0A8K0CK68_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CK68_9COLE)

HSP 1 Score: 96.3 bits (238), Expect = 6.280e-19
Identity = 63/222 (28.38%), Postives = 112/222 (50.45%), Query Frame = 1 
Query:   34 GVAQSLAHEVVSNPD-DWEKRRTALISMQQAVDAVGKSGQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNTRFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGARTDARACFAIFNNHWPKRADRILAAAEPRTAKSL 696
            G       E +++P  DW KR  AL  ++  + A   S +     F A+L R L+ PL+ TL DLRS +++EAC+ +  ++ T  +        +LN L+ L+ N   V+       +R ++  T+ PR +  +   + NS+S ++R S   ++  +L  W    +EK +  L+  +   + DA   AR  +R  F  F +H+P++AD +L + EP   ++L
Sbjct:  332 GEQMKTIQETIADPTKDWNKRADALKKLRSLIIAGATSYEE----FYANL-RLLELPLQATLKDLRSQVIREACITIAYMAQTLNSKFDHSAECLLNPLINLIQNSAKVVATAGHITVRFILQYTQSPRLIPIITNNLSNSKSKDIRRSCCEFLEQVLTQWSTHPLEKHITLLQEALKKGVADADPEARVSSRKAFRGFRDHFPEQADVLLQSLEPSYRRAL 548
[Close]
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: A0A2D4C5Q4_PYTIN (CAP-Gly domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5Q4_PYTIN)

HSP 1 Score: 94.4 bits (233), Expect = 6.890e-19
Identity = 70/212 (33.02%), Postives = 108/212 (50.94%), Query Frame = 1 
Query:   31 EGVAQSLA---HEVVSNPDDWEKRRTALISMQQAVDAVGKSGQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNT--RFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGARTDARACFAIFNNHWPKRA 651
            + +A +LA     +  N D+W +R  AL  ++Q  +A+  +   G  V  A LWR LK PLK  L DLRS IVKE C++L  ++    ++MA  +R++L  L+++  +GN V       C   +++    R P  L+ +  T+ +S++  +R S  S   L L TW     + +V  LE  +   L D SS  RT A   F  F   +PKRA
Sbjct:    4 DALATALAGAMDRIARNGDNWVERMHALADIRQRFEALQDADDAGALVDAA-LWRSLK-PLKGMLQDLRSQIVKEVCVVLTTMALATKDAMAPFLREVLPTLVEVRGSGNKVCGSYCAECXDALVALVVVRGP-TLRFLVDTLVDSKNKLIRLSXISASXLTLLTWNTVLDKTDVQQLERALKAALNDPSSTCRTQAYEFFVAFQQAFPKRA 212
[Close]
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: A0A834HZJ5_RHYFE (Uncharacterized protein n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834HZJ5_RHYFE)

HSP 1 Score: 95.5 bits (236), Expect = 1.160e-18
Identity = 60/229 (26.20%), Postives = 112/229 (48.91%), Query Frame = 1 
Query:   43 QSLAHEVVSNPDDWEKRRTALISMQQAVDAVGKSGQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNTRFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGARTDARACFAIFNNHWPKRADRILAAAEPRTAKSLRENQAQSAAAN 729
            +S+   +  +  DW KR  AL  ++  V A           F   L ++L  PL++++ DLRS +V+EAC+ +  LS    N        +L  L+ L+ N   ++    D  ++ +I N   PR +  +      S+S  +R S   ++ ++L  WP   +EK+V  L+  +   + DA   AR  +R  F  F +H+P +A+ +L + EP   ++L+ +   ++++N
Sbjct:  327 KSIQEVISDSSKDWNKRVDALKKIRSLVIAGAMQSDD----FYVGL-KNLDIPLQNSIKDLRSQVVREACITIAYLSQNIGNRFDKTAEMLLQSLINLIQNSAKIMATSGDVTVKFLIKNIHNPRLIPIITSNATTSKSKEIRRSCCEFIEIILSHWPTHPLEKQVALLQDCVKKGVADADPEARVSSRKAFKAFRDHFPDQAEVLLQSLEPSYRRALQGDGMSASSSN 550
[Close]
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Match: A0A7J6Z033_9COLE (Uncharacterized protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J6Z033_9COLE)

HSP 1 Score: 95.5 bits (236), Expect = 1.230e-18
Identity = 65/214 (30.37%), Postives = 110/214 (51.40%), Query Frame = 1 
Query:   58 EVVSNPD-DWEKRRTALISMQQAVDAVGKSGQGGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAALMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNTRFPRQLKEMEYTVKNSRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGARTDARACFAIFNNHWPKRADRILAAAEPRTAKSL 696
            EVV++P+ +W KR  AL  ++  V A    G      F   L R+L+ PL+ TL DLRS +V+EAC+ +  LS T  N        +LN L+ L+ N   V+    +  +R ++  T+ PR +  +   +  S+S  +R S   ++ L+L  W    +EK +  ++  +   + DA   AR  +R  F  F +H+P +A+ +L + EP   ++L
Sbjct:  773 EVVADPNKEWNKRVDALKKIRSLVIA----GATNHEEFYIHL-RNLEIPLQGTLKDLRSQVVREACITISYLSQTLTNKFDHCAECLLNGLINLIQNSAKVVATAGNITVRFILQYTQNPRLVPIITSNLGTSKSKEIRRSCCEFLELILMLWSTHPLEKHIGLIQEALKKGIADADPDARVSSRKAFRGFKDHFPDQAEILLQSLEPSYRRAL 981
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1004.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI4_ECTSI4.620e-9571.36CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KBA3_9PHAE2.950e-7973.26CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
UPI00096B5BFF4.800e-2130.77LOW QUALITY PROTEIN: CLIP-associating protein n=1 ... [more]
A0A2A4K157_HELVI4.070e-2028.50Uncharacterized protein n=16 Tax=Noctuidae TaxID=7... [more]
A0A2D4C9E0_PYTIN4.210e-1933.02CAP-Gly domain-containing protein n=2 Tax=Pythium ... [more]
A0A7E5W8E6_TRINI4.650e-1927.57CLIP-associating protein isoform X1 n=7 Tax=Noctui... [more]
A0A8K0CK68_9COLE6.280e-1928.38Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A2D4C5Q4_PYTIN6.890e-1933.02CAP-Gly domain-containing protein (Fragment) n=1 T... [more]
A0A834HZJ5_RHYFE1.160e-1826.20Uncharacterized protein n=1 Tax=Rhynchophorus ferr... [more]
A0A7J6Z033_9COLE1.230e-1830.37Uncharacterized protein n=1 Tax=Abscondita termina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1004contigS-latissima_F_contig1004:10981..17757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.3
Seed ortholog evalue5.3e-80
Seed eggNOG ortholog2880.D8LJI4
KEGG koko:K10423,ko:K10758
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule binding
EggNOG OGsCOG5244@1,KOG4568@2759
EC1.8.3.2
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons5
Model size758
Cds size756
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1004.57.1prot_S-latissima_F_contig1004.57.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1004 10981..17757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.8102682-CDS-S-latissima_F_contig1004:10980..111961622815363.8102682-CDS-S-latissima_F_contig1004:10980..11196Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 10981..11196 +
1693924832.5963798-CDS-S-latissima_F_contig1004:10980..111961693924832.5963798-CDS-S-latissima_F_contig1004:10980..11196Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 10981..11196 +
1622815363.8221374-CDS-S-latissima_F_contig1004:12116..122541622815363.8221374-CDS-S-latissima_F_contig1004:12116..12254Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 12117..12254 +
1693924832.6195195-CDS-S-latissima_F_contig1004:12116..122541693924832.6195195-CDS-S-latissima_F_contig1004:12116..12254Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 12117..12254 +
1622815363.8333728-CDS-S-latissima_F_contig1004:13024..132341622815363.8333728-CDS-S-latissima_F_contig1004:13024..13234Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 13025..13234 +
1693924832.6303992-CDS-S-latissima_F_contig1004:13024..132341693924832.6303992-CDS-S-latissima_F_contig1004:13024..13234Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 13025..13234 +
1622815363.849445-CDS-S-latissima_F_contig1004:14244..143461622815363.849445-CDS-S-latissima_F_contig1004:14244..14346Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 14245..14346 +
1693924832.6393166-CDS-S-latissima_F_contig1004:14244..143461693924832.6393166-CDS-S-latissima_F_contig1004:14244..14346Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 14245..14346 +
1622815363.8591719-CDS-S-latissima_F_contig1004:17667..177571622815363.8591719-CDS-S-latissima_F_contig1004:17667..17757Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 17668..17757 +
1693924832.6582313-CDS-S-latissima_F_contig1004:17667..177571693924832.6582313-CDS-S-latissima_F_contig1004:17667..17757Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1004 17668..17757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1004.57.1

>prot_S-latissima_F_contig1004.57.1 ID=prot_S-latissima_F_contig1004.57.1|Name=mRNA_S-latissima_F_contig1004.57.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=252bp
VAGGGTAGGLEGVAQSLAHEVVSNPDDWEKRRTALISMQQAVDAVGKSGQ
GGPTVFTADLWRHLKEPLKHTLNDLRSAIVKEACLLLEKLSTTAANSMAA
LMRDMLNVLLQLMANGNSVIVGQVDSCMRHVISNTRFPRQLKEMEYTVKN
SRSNNLRESVASYVLLMLGTWPAPSMEKEVVHLESIISLLLKDASSGART
DARACFAIFNNHWPKRADRILAAAEPRTAKSLRENQAQSAAANGTGGGGG
AK
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mRNA from alignment at S-latissima_F_contig1004:10981..17757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1004.57.1 ID=mRNA_S-latissima_F_contig1004.57.1|Name=mRNA_S-latissima_F_contig1004.57.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=6777bp|location=Sequence derived from alignment at S-latissima_F_contig1004:10981..17757+ (Saccharina latissima SLPER63f female)
GTGGCTGGGGGAGGGACCGCGGGAGGCCTCGAGGGCGTGGCGCAGTCCCT
AGCGCACGAGGTAGTGAGCAACCCTGATGACTGGGAGAAGCGACGGACGG
CGTTGATTTCCATGCAGCAGGCGGTGGATGCCGTCGGTAAATCGGGACAG
GGGGGACCCACGGTGTTCACGGCGGACTTGTGGCGGCACTTGAAGGAGCC
CCTTAAGCATACGCTGGTGAGAACGTGTTTGATCTTACGGGGTTTTGTGT
TGTTGCTGGTGGCGGTGATGGTGGTGGTGATGGTGGCGGTGGTGGTGGTG
GTGGTGATTATGGCGTTGGCACGGGGGGAGGGGGGGGTGATGGTGGTGGT
GGTGGTGGTGGTTATTGCGTTGGCGGGGGGAGAGGGGGGTGCTGGTGGTG
GTGATGGTGGTGGTGTTGGTTGTGGCGGTGGGAGGGGAGGGCGTGTGGTG
GTGGTGGTGTTGGTGTTGGTGGGGGTGGGGGTGGAGTTGGTGGTGGTGGT
AGTGGTGGCTGTGGTGGGGGTGGTGTGGGGGTGGTTGTGGTGGTCCTTAG
ACGTGATCGTAGTCGTGATCTTAGCTGTGAGTGTAATCGCGATCGTATTC
GTCCTCGCATCGCCACCGTACATACATAGTCGGAAGTCGCACCGGTAAAA
TCGCGATCTTGATCTTAAATCGTGAGAATAATCGTAACCTCTTCACTCCC
TTGTTTTCGTTTTTGTTTGTGCTCCCCCCCGTTTCTCTTTCGCTCTCTCT
CGCTCTCACTCGCTCTCTTGTCTTTTGTCTTGTTTTTCTTTCTCCCGCGT
CCGTGGCTCGTCCTTCTTCTCTTATCCCGCTGTGCCTTTTTCCCCGTGGC
CGAAATCAAATAAAACCAAACCAAAACAAAACAAAACAAACCAAAATCAT
TGTTTCTTGAACAAAATAACATCACGTTTCAACAATACACTATGCAAAAT
CTGCAAAACAAACAACCCAAACACACCATTTTATTTTTCAACAAAATAAC
AAAACATTAAAAAAAAATCACAATGCACAAAAATCTCTCTAAAACCTAAA
ACACCAAAATCTCAACAAAAAACCGAAACCAAAATGGCCCAAAATGACCA
AAATGGCCAAAACGACCAAAATGGAACCGTGCTTAGAACGACCTTCGGTC
GGCCATCGTGAAGGAGGCGTGTCTCCTCCTCGAAAAGCTTTCGACCACAG
CGGCAAACTCCATGGCGGCCCTGATGAGAGATATGCTGAACGTCTTGCTG
CAGCTCATGGCCAACGGAAACTCGGTGAGAGGACTTTTGGGGGCGGACAG
ACTAGCGAGAGCGTCCAGTCGAGAGCGACCAGTCGAGAGCGACCAGTCGA
GAGCGATCAGTCGAGAGCGACCAGTCGAGAGCGACCAGTCGAGAGCGACC
AGTCGAGAGCGACCAGTCGAGAGCGACCAGTCGAGAGCGACCAGTCGAGT
GCGACCAGTCGAGAGCGACCAGTCGAGAGCGACCAGTCGAGAGCGACCAG
TCGTACGAGTAGTATTTTTCGTTTCGATTTGGCCCAGCTTCGACTAAACG
GTTGGTAGGAACACACTTCGTACATCTTACACTTCTTTTTCTTTTTCTGA
GATGCTGTCTCAGATGGTCGTGGTTCGGGTTCGGCTTTTATGTTATAGTT
AAAAGTCGTGTGTATTTCAACAAAAACTCGGTGAGGGTTTTGGGGGGCGA
ACAAACAGACTGGCGAGAGCGTTGGAAGTACTTTGTAGGAAAGCTTGCTG
CTCTTAGTTGTGGTGTGCCCCTGTGTTTTTTTCTTTTTTTACCCCTATAT
ACTCGTATATATGTACCAAGTCTGCCCGTTTTTTTAGCGTTTTGTGTGTC
TGTGTGTTTGTGTGTTGTGTGCTTGTGTGCTCACACGTATGATATCGGCA
TACACTAGTAGTAACTTCGCCGCTGCCGCCTCTCGCCCCCCCAACCCTCC
CCCCCCTCGCCCCCCACCTCCCCCACCCCCTGTCCCTCCCCACCCCTCTC
CCTCCCCTGGCGGTCCCTCCCCCCCCCGGTCGTGGATCAATTAGGTGATC
GTGGGTCAGGTAGATTCTTGCATGCGGCACGTGATCTCGAACACTCGTTT
CCCCCGTCAGCTGAAGGAGATGGAGTACACCGTCAAGAACAGCCGCTCCA
ATAACCTCAGGGAGTCCGTGGCCTCGTACGTGCTGCTCATGCTCGGCACC
TGGCCCGCGCCTTCGATGGAGAAGGAAGTTGTGCACCTCGAGTCCATCAT
CTCGGTGAGTTTGGAATGACACAAAAAACAAATATCACGAACATGGACAT
GGCATGGGCATGGCATGGCATGCGGCATGCTGCGGCATGATGATGTTATT
AACATCTCACGACATGGCATGGCATGACATTGTACATGATGCTGGTCGCT
CACAGGCGGTCTAGTGGTTATAACCCATTCAGAACTGGAAAAAAATATCC
CACACTAATTCCAAGTGGTTTGTCCCCAAATTCGTGGGACCAGTTCTTAA
GGGGTTAACCTCCAATACCGCTACGTATGTATTCATAGTGTTGATTTGAT
CTCGGAGTTCGAAATCTTGCCGTGGGGAAATCACGAATTTATGTAGAAGA
ACTGACTGCGGAGAGCGCCTATCATAGCGTGGGTATAGAGAGGCGTTTTT
CGACGCGGGTGGACGAGGAAAAAAAGGGCTGTATATACCCTTTTCGCCGT
AAAAAACAAAGGCACGAACGCCTCCGTACAGGGGATGGGGGATGGAAGAG
CCTGGTATGCGACCCCGGATCTGAGTTATATGTGACTACTACTATTACGG
GGGACCATAGTAAACACTAGTAAATAGGACCTACGGTATACACGAAAACC
TATAAATACACCTATTTTTACTAACAATATTTGGTCCTCTTTACTATGGT
CCTCCGTAATAGGAGGGAGCAGGAGCAAGGAAGAGCGAAGATGTTCAGTG
GGATGGAATAAAAAAAACGAAGGAAAAAAAAACGAACATGACATGACATG
AAAATGAAACGACATGCCCATGGCATTTTATATGACCATGATGTACCAAA
ACTACGGCAGTACGCGACATTTCTTCTTGGCAATAAAGTATGCCGTATCG
TACATATTGTGGCATGAATATGTAGGAACATAATAACCCACGTGCCCACG
GCACCACAACGAAACGACATTTCGCGCGCTGTGTGCCGTTTCACGACACC
CGGCCGTTTCATTTCTTGTAACCGTTTTTTTTCATGCTTTGTAACGTTTT
CGTGGACATGACAGTTACTGCTGAAGGACGCCTCCAGCGGGGCGAGAACG
GACGCCCGAGCCTGCTTCGCCATATTCAACAACCACTGGCCGAAGAGGGC
GGACAGAATTTTGGCGGTACGTACGTAGATGCATACGTATATACGCCCGG
CATCAATCGAAGCGCAGACTACGACCGATCCGGGTGTGTAGCACTTTTAT
AGTCAAGAATCACGTACAATGCCTACTTTCGTTTTTTTTTTTCTGACAAG
TAACTGACGCGTGCTACGATAGAGGTATGCCGGTATACCGTTTTTTGGCT
GAAACGTTTTCTGTATGACGGGGAGCCCTCCTTAACCCAAAATCGTCGGA
ATTTCATTATGGTGTTGCCAGATTTTTCATTCTGTACTTTATTTAGGCCA
TGAGATTGTCCATCGGGTAGCACTTTATTTTCCTCCAAAGGCAGGTGGCT
TACTATTACTATAGAGCTCCTCAAGTGACCACCCTCAGAAAAAAACATGG
AGCCCTCCTTAACCCAAAATCGTCGGAATTTCATTAATTCTTGTGTTGGC
AGTATTTTTCATTTTTTACGTCAGGGCATATGGGGTTGTTCATCGGGTAT
ACATATATACGTATAGCACTTTTATTTTCCTCCAAAATCGGTTTTTGACT
TGCTGTTAGTATAGAGCTCCTCAAGTCACCACCCTCAGAAGGCAAAAATG
GTGCACCTCTACTTTAGCATGTCCCCAAATTCGTGGGACCAGTTCTTAAG
GGGTTAAACCCAAAATCGTCGGAATTTCATTAATTCTTGTGTTGGCAGTA
TTTTTCATTTTTTACGTCAGGGCATATGGGGTTGTTCATCGGGTATACAT
ATACAAGGTTCCCCTTCGGGATGTTGGTCACTTGAAATCCCGGGGGTGTC
GCAAGTTGAAAATAGATCGCACATGCTTCGTACTTCCCTTTTTGGACCCT
TTTTGGAGCAAACTTGTGTTGCATAATATACTGCTGTATACGATGAGTTA
TCACGGCCGTACTGCGCTGTAGAGCTGAGTATACACAAGATAGTATATAA
TAGAGCTGTTGCCTAACGAGACCCGCCCCGGTCCTAGATGGAGCATTTAC
CACCTTTAGGGCGGGTACCCTGGTGCGCGTTTAACAGCCGAGTACTCGTC
GAAGGGTACCCGTCGAACAGCTGGGTACCCGGGTGCCCGGAGCCCAAACT
CTCGCGAGTGTGAAGTGTTGTCCATACTCGTGACGGGTATTAGCTGTTTT
GCCGTTTTCCCAACCGCTGCTGTACTGCGCGATCAGAGGGGAGTTTTTGC
TGGAATAGATACATCAAATATACACCGCCCACCGCCCATACAAAGAAAAA
CAAGAACCAGCGGGATACTATATAGTCGTAGCTGTCACAACTACACCTGC
TGGATCCCCCCTGGGTAGCTGTGTGGTACGGTCCTGCGCACGCATACTCG
GCACCACAGCCGTCCCCAAAAAGGCAACAATCTGAACGCGGCTGCTGCGT
GTTGTACGCTTCTTTCTTGTGTAGTGCTGCTGTGCTGTTCGATAAGTGGC
CCCTTGGCTGCTTTGTAGTTTGAAGTCTAGAGACATGCACCCGTAACATG
CAGCAGTACTCGTACGTAGTACTACTGCTGTACAAAAATATTCGTACGCA
TGTTGATCGGCCTATCGTTTTACGTAGATAGACTTAGATATGATATGCAT
GCATACGTACTCATCGTAGATCTGTGTATGTATGTACTACAGTACCGGCC
CGCTTATAAGAAACCAGAAGTCGGGCTTAGGCTGACTTTCTTGTTTTAGA
AAGGGGAGTGTCCCACACTAACTTCAGTATAATGGCTGTCGACTTTCTTA
TTTTCCCCGTAATGTTTAGGCTGAGTTTCTTGTGGGGCACTTTCTTATGA
GAGGGCCGGAAGTGTATACGTAGATCGAAAAATGTTGGGACCAAATTTGC
AAATTTACATAAAAGGCGCTTGTAATTTTTCAAGCCGTCTCGTACAACTG
CTACTGCTGTACACAGCCCAGAGGGAGAGCAGACGCATGCAACGTGGTAT
CAACTACTGCTGCACGACGCTTTATGTGTGCCTCGTTCAATGTCAAGTCG
GTGTGGTCCTTATTCTTGTCTCGTGCGTGGTGCGTGCTGTGTGTTTTTCC
GTTCATGCGGTGGGGCAAAAAAGAACCAAAACCAGTCGTACGACAGGTTT
TGCATGAAAAGTTGCGAGGCGGTGTCAAATCCCCGGGCGTCTCCCGAGGT
ATTTGCCAGAAATTTGCGGCTTGAAGGCCCAAAAGCACGCCCCACGGGCC
TCGGCCGGGACCCGCACTTGCGCCGTGGTGTACACGCGGCCCCCCTGCGT
GCCCCGCAGCCGATAGCGCGAGAAAAGACCCGCGGCCGGAGGAGAAAAGT
GAAAGTATTCCGGGAAAATGTCCATTTGGTACCTATACATATACGTATAG
CACTTTTATTTTCCTCCAAAATCGGTTTTTGAGTGAGGTATAGAGAGCTC
CTATACTATAATCAAGTGACCACCCTCAGAAAGTGGCCTGTATGCAGGTG
CACCTCTACCGTATACTTACAGTAGTATTAGCGCTAGCTGTCGTTATGGC
GTAGGCTCAAACCGATCTTACGGTTTTATGCTTACTGCTGTCTGGTAGGG
GAGTGGTCTACCGTTCTACATAGTATTATGTTTATCGTTGTTGTAGGGCG
TAGGCTCTACCGTTACTTAAGTAGATTAGGGTTACTGCTGTCTGTTTTAG
GGGCAGTAGGGGTCCCGGGTTATTTTTTTCATCAGGGGGGCTATTGTAGT
AAGAAGAACCCACAGGGGCCCCCAAAAAAATACACCCCCCTAAGTGTCAC
ACACATTTTGGCCCTGATTGCTTAAATTTTATGTATGTTCCCCCCGGATT
CGTGAACATGTCATAAACGTCGCCGTCATCGTCATCATCAAAACAACAAC
AACAACAACAACACAACAAACAAACAACAAAAAAAAAACAACAACACAAC
ACCAAAACCAACACCCCCCCCAACAACCAAAAACCCCCCCAACAACCCCC
CAACAACAACCCACCAACACAACACAAAAACAAAAACCAAAAACAACAAC
AACCAACAACAAAACCCAAAACACAACAACCAACAACAACAACAAAACAA
CAACAACAAAAACAACAACAACACAACAAAACCAACAACAACAAAAACCC
AAACAAAACACCCCATTTATTTTTAAAATCCCCAACCCATTATTACGAGG
GCGGGGTCGGGCAGGTCGGTTGGGGTCGGTGGGTGCCCGACCCGACCCGG
AGATTTTAAAAACCCTCCCCCCCACCCACCCGACCCGCCCCGACCCGACC
CGACCCCCCGCGAATTTCAAAAACTTCAAGACCCCACCTTTTCTTTTTTA
AAATTCGTTTTTCGGATTTTAATTGTCGTACTTTCAGGCGGCCGAGCCAA
GAACGGCCAAGAGTCTGCGAGAAAACCAAGCTCAATCAGCAGCCGCGAAT
GGTACTGGGGGGGGGGGGGGAGCGAAA
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Coding sequence (CDS) from alignment at S-latissima_F_contig1004:10981..17757+

>mRNA_S-latissima_F_contig1004.57.1 ID=mRNA_S-latissima_F_contig1004.57.1|Name=mRNA_S-latissima_F_contig1004.57.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1512bp|location=Sequence derived from alignment at S-latissima_F_contig1004:10981..17757+ (Saccharina latissima SLPER63f female)
GTGGCTGGGGGAGGGACCGCGGGAGGCCTCGAGGGCGTGGCGCAGTCCCT
AGCGCACGAGGTAGTGAGCAACCCTGATGACTGGGAGAAGCGACGGACGG
CGTTGATTTCCATGCAGCAGGCGGTGGATGCCGTCGGTAAATCGGGACAG
GGGGGACCCACGGTGTTCACGGCGGACTTGTGGCGGCACTTGAAGGAGCC
CCTTAAGCATACGCTGGTGGCTGGGGGAGGGACCGCGGGAGGCCTCGAGG
GCGTGGCGCAGTCCCTAGCGCACGAGGTAGTGAGCAACCCTGATGACTGG
GAGAAGCGACGGACGGCGTTGATTTCCATGCAGCAGGCGGTGGATGCCGT
CGGTAAATCGGGACAGGGGGGACCCACGGTGTTCACGGCGGACTTGTGGC
GGCACTTGAAGGAGCCCCTTAAGCATACGCTGAACGACCTTCGGTCGGCC
ATCGTGAAGGAGGCGTGTCTCCTCCTCGAAAAGCTTTCGACCACAGCGGC
AAACTCCATGGCGGCCCTGATGAGAGATATGCTGAACGTCTTGCTGCAGC
TCATGGCCAACGGAAACTCGAACGACCTTCGGTCGGCCATCGTGAAGGAG
GCGTGTCTCCTCCTCGAAAAGCTTTCGACCACAGCGGCAAACTCCATGGC
GGCCCTGATGAGAGATATGCTGAACGTCTTGCTGCAGCTCATGGCCAACG
GAAACTCGGTGATCGTGGGTCAGGTAGATTCTTGCATGCGGCACGTGATC
TCGAACACTCGTTTCCCCCGTCAGCTGAAGGAGATGGAGTACACCGTCAA
GAACAGCCGCTCCAATAACCTCAGGGAGTCCGTGGCCTCGTACGTGCTGC
TCATGCTCGGCACCTGGCCCGCGCCTTCGATGGAGAAGGAAGTTGTGCAC
CTCGAGTCCATCATCTCGGTGATCGTGGGTCAGGTAGATTCTTGCATGCG
GCACGTGATCTCGAACACTCGTTTCCCCCGTCAGCTGAAGGAGATGGAGT
ACACCGTCAAGAACAGCCGCTCCAATAACCTCAGGGAGTCCGTGGCCTCG
TACGTGCTGCTCATGCTCGGCACCTGGCCCGCGCCTTCGATGGAGAAGGA
AGTTGTGCACCTCGAGTCCATCATCTCGTTACTGCTGAAGGACGCCTCCA
GCGGGGCGAGAACGGACGCCCGAGCCTGCTTCGCCATATTCAACAACCAC
TGGCCGAAGAGGGCGGACAGAATTTTGGCGTTACTGCTGAAGGACGCCTC
CAGCGGGGCGAGAACGGACGCCCGAGCCTGCTTCGCCATATTCAACAACC
ACTGGCCGAAGAGGGCGGACAGAATTTTGGCGGCGGCCGAGCCAAGAACG
GCCAAGAGTCTGCGAGAAAACCAAGCTCAATCAGCAGCCGCGAATGGTAC
TGGGGGGGGGGGGGGAGCGAAAGCGGCCGAGCCAAGAACGGCCAAGAGTC
TGCGAGAAAACCAAGCTCAATCAGCAGCCGCGAATGGTACTGGGGGGGGG
GGGGGAGCGAAA
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