mRNA_S-latissima_F_contig10.15.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig10.15.1
Unique NamemRNA_S-latissima_F_contig10.15.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 3.210e-99
Identity = 171/229 (74.67%), Postives = 190/229 (82.97%), Query Frame = 1 
Query:   58 SQGKVFGVPLVKLMQVTPGEDVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESEN------ECLS--LTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLFED 720
            S+ KVFGVPL+ LMQ   GE VPWV+KRFV FLSKFGLESVGLFRLAGDG+D A LR ALD+G QVCWDP + ++         +C S  L DVNMVAQLLKAFFRELPEPLVPFSAYSKV+AIAKAAGVADARWVQAMK+ILW IP ANYNCLR        FLF FLR+VA HS+TNRMTSENLAIVWAPNL+RP+DDDPFA+L+DLRFQIETVRWMVDC +QLF+D
Sbjct: 1104 SKDKVFGVPLIGLMQ--QGEQVPWVVKRFVDFLSKFGLESVGLFRLAGDGMDCADLRDALDNGKQVCWDPIDPIDEAEGSTGATDCASSSLMDVNMVAQLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLR--------FLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFAVLRDLRFQIETVRWMVDCCDQLFDD 1322
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: A0A6H5JEV0_9PHAE (Rho-GAP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV0_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 4.590e-95
Identity = 167/228 (73.25%), Postives = 184/228 (80.70%), Query Frame = 1 
Query:   58 SQGKVFGVPLVKLMQVTPGEDVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECL--------SLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLFE 717
            S+ KVFGVPL+ LMQ   GE VPWV+KRFV FLSKFGLESVGLFRLAGDG+D A LR ALD+G QVCWDP + ++   E          SL DVNMVAQLLKAFFRELPEPLVPFS   KV+AIAKAAGVADARWVQAMK+ILW IP ANYNCLR        FLF FLRKVA HS+TNRMTSENLAIVWAPNL+RP+DD PFA+L+DLRFQIETVRWMVDC +QLF+
Sbjct: 1053 SKNKVFGVPLIGLMQ--QGEQVPWVVKRFVDFLSKFGLESVGLFRLAGDGMDCADLRDALDNGKQVCWDPMDPIDETEESTKATVCASSSLMDVNMVAQLLKAFFRELPEPLVPFS---KVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLR--------FLFEFLRKVAMHSSTNRMTSENLAIVWAPNLLRPQDDHPFAVLRDLRFQIETVRWMVDCCDQLFD 1267
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: A0A835Z007_9STRA (Rho-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z007_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.260e-51
Identity = 109/223 (48.88%), Postives = 145/223 (65.02%), Query Frame = 1 
Query:   61 QGKVFGVPLVKLMQVTPGEDVPWVLKRFVGFLSKFG-LESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESEN--ECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLFED 720
            +G V GV +  +  V  GE VPWV+ R + FL   G L++VGLFR+AGDGV+   LR A++   QV WDP+E    ++    L L D  +VAQLLKA+FRELPEP++P++ Y +V+AIA+AAG    +WV AMK ILW +P+A Y  LR         LF FLR VA  SA N MT+ NLAIVWAPNL+RP D +PF  L+DL+F  +T  W+++    +F D
Sbjct: 1061 RGPVMGVDI--MAAVGQGE-VPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRG--------LFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTD 1272
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: A0A553QQX2_9TELE (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553QQX2_9TELE)

HSP 1 Score: 111 bits (277), Expect = 1.140e-24
Identity = 69/194 (35.57%), Postives = 104/194 (53.61%), Query Frame = 1 
Query:  124 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYE 705
            P V+++ V F+ + GL  VGLFR  G       L+ A D G +  +D            S TDV+ VA LLK + RELPEPLVPFS Y + +   K       + +Q ++ +L  +P AN+N L+        ++  FL  V ++S  N+M+ +NLA V+ PN++RP+ +DP +I+  LR  +E  R  V   E
Sbjct:   82 PLVVEQCVDFIREHGLTEVGLFRQPGQATLVKELQEAFDAGEKPSFD------------SSTDVHTVASLLKLYLRELPEPLVPFSRYEEFLGCGKRIASEREKGLQELRILLHELPVANFNLLK--------YICQFLNDVQSYSNVNKMSIQNLATVFGPNILRPKAEDPESIIGGLRSTLEQQRRWVSMAE 255
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: H3CQ06_TETNG (Rho GTPase activating protein 24 n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CQ06_TETNG)

HSP 1 Score: 113 bits (283), Expect = 4.270e-24
Identity = 72/220 (32.73%), Postives = 118/220 (53.64%), Query Frame = 1 
Query:   64 GKVFGVPL---VKLMQVTPGEDVPWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLF 714
            G +FG  L   V+  +    +  P ++++ V F+ ++GL   GLFRL G       L+ A D G +  +D              TDV+ VA LLK + RELPEP+VPF  Y +++  AK  G  D   V+ +K ++ S+P  NYN L+        ++  FL +V ++S  N+MT +NLA V+ PN++RP+ +DP AI++      + +  ++  ++ LF
Sbjct:   35 GGIFGQKLEETVRYERRFGNKPAPMLVEQCVDFIRQWGLREEGLFRLPGQANLVKELQDAFDCGEKPSFDCN------------TDVHTVASLLKLYLRELPEPVVPFHKYDELLTCAKLLGKDDELGVKELKQLVQSLPPVNYNLLK--------YICRFLDEVQSYSGVNKMTVQNLATVFGPNILRPKVEDPVAIMEGTVLVQQLMAVLIGRHDALF 234
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: A0A3P8WYQ1_CYNSE (Rho GTPase activating protein 24 n=5 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WYQ1_CYNSE)

HSP 1 Score: 112 bits (281), Expect = 8.500e-24
Identity = 67/197 (34.01%), Postives = 110/197 (55.84%), Query Frame = 1 
Query:  124 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLF 714
            P ++++ V F+ ++GL+  GLFRL G       L+ A D G +  +D              TDV+ VA LLK + RELPEP+VPF  Y   +A AK  G  D   ++ ++ +L S+P  NYN L+        ++  FL +V ++S  N+M+ +NLA V+ PN++RP+ +DP AI++      + +  ++D ++ LF
Sbjct:  147 PMLVEQCVDFIRQWGLQEEGLFRLPGQANLVKELQDAFDCGEKPSFDCN------------TDVHTVASLLKLYLRELPEPVVPFHKYDDFLATAKILGKDDEMGLKELRRLLESLPPVNYNLLK--------YICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKIEDPVAIMEGTVLVQQLMAILIDHHDVLF 323
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: A0A5A9PH16_9TELE (Rho GTPase-activating protein 24 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PH16_9TELE)

HSP 1 Score: 112 bits (280), Expect = 1.090e-23
Identity = 65/179 (36.31%), Postives = 104/179 (58.10%), Query Frame = 1 
Query:  124 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDL 660
            P V+++ V F+ + GL  VGLFR +G       L+ A D G +  +D            S TDV+ VA LLK + RELPEPLVP+S Y +++  AK       + +Q +K++L+ +P AN+N L+        ++  FL  V ++S  N+M+ +NLA V+ PN++RP+ +DP +I+ +L
Sbjct:  156 PLVVEQCVDFIREHGLTEVGLFRQSGQATLVKELQEAFDAGEKPSFD------------SSTDVHTVASLLKLYLRELPEPLVPYSRYEEILVCAKKIPSDREQGLQELKSLLYELPVANFNLLK--------YICQFLNDVQSYSNINKMSIQNLATVFGPNILRPKAEDPESIIGEL 314
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: A0A3B5AIF6_9TELE (Rho GTPase activating protein 24 n=30 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B5AIF6_9TELE)

HSP 1 Score: 110 bits (274), Expect = 7.030e-23
Identity = 65/197 (32.99%), Postives = 109/197 (55.33%), Query Frame = 1 
Query:  124 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLF 714
            P ++++ V F+ ++GL   GLFRL G       L+ A D G +  +D              TDV+ VA LLK + RELPEP++PF  Y + +A AK  G  D   ++ +K ++ S+P  NYN L+        ++  FL +V ++S  N+M+ +NLA V+ PN++RP+ +DP AI++      + +  ++  ++ LF
Sbjct:  158 PMLVEQCVDFIRQWGLREEGLFRLPGQANLVKELQDAFDCGEKPSFDCN------------TDVHTVASLLKLYLRELPEPVIPFQKYDEFLACAKLLGKDDEMGMKELKRLVESLPPVNYNLLK--------YICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKIEDPVAIMEGTVLVQQLMAVLIGRHDVLF 334
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: A0A3B3QBD8_9TELE (Rho GTPase-activating protein 24-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QBD8_9TELE)

HSP 1 Score: 109 bits (272), Expect = 9.310e-23
Identity = 63/177 (35.59%), Postives = 101/177 (57.06%), Query Frame = 1 
Query:  124 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILK 654
            P V+++ V F+ + GL+ VGLFR  G       L+ A D G +  +D            S TDV+ VA LLK + RELPEP+VPFS Y + +   K   +   + ++ +K +L  +P AN++ L         ++  FL +V +HS  N+M+++NLA V+ PN++RP+ DDP +I++
Sbjct:   62 PLVVEQCVAFIREHGLQEVGLFRQPGQATLVKELQVAFDTGEKPTFD------------SSTDVHTVASLLKLYLRELPEPVVPFSRYQEFLQCGKRVHLERRQTLEDLKKLLHELPVANFSLLH--------YVCRFLFEVQSHSHINKMSTQNLATVFGPNILRPKADDPESIIE 218
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BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Match: A0A672HML1_SALFA (Uncharacterized protein n=6 Tax=Ovalentaria TaxID=1489908 RepID=A0A672HML1_SALFA)

HSP 1 Score: 109 bits (273), Expect = 9.530e-23
Identity = 64/197 (32.49%), Postives = 110/197 (55.84%), Query Frame = 1 
Query:  124 PWVLKRFVGFLSKFGLESVGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVAQLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPNANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPEDDDPFAILKDLRFQIETVRWMVDCYEQLF 714
            P ++++ V F+ ++GL   GLFRL G       L+ A D G +  +D              TDV+ VA LLK + RELPEP++PF  Y + +A AK  G  D   ++ ++ ++ S+P+ NYN L+        ++  FL +V ++S  N+M+ +NLA V+ PN++RP+ +DP AI++      + +  ++  ++ LF
Sbjct:  160 PMLVEQCVDFIRQWGLREEGLFRLPGQANLVKELQDAFDCGEKPSFDCN------------TDVHTVASLLKLYLRELPEPVIPFQKYDEFLACAKLLGKDDEMGMKELRRLVDSLPSVNYNLLK--------YICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKIEDPVAIMEGTVLVQQLMAVLIGRHDVLF 336
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig10.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL35_ECTSI3.210e-9974.67Similar to Rho GTPase activating protein 24 n=1 Ta... [more]
A0A6H5JEV0_9PHAE4.590e-9573.25Rho-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z007_9STRA1.260e-5148.88Rho-GAP domain-containing protein n=1 Tax=Tribonem... [more]
A0A553QQX2_9TELE1.140e-2435.57Rho-GAP domain-containing protein (Fragment) n=1 T... [more]
H3CQ06_TETNG4.270e-2432.73Rho GTPase activating protein 24 n=1 Tax=Tetraodon... [more]
A0A3P8WYQ1_CYNSE8.500e-2434.01Rho GTPase activating protein 24 n=5 Tax=Cynogloss... [more]
A0A5A9PH16_9TELE1.090e-2336.31Rho GTPase-activating protein 24 n=1 Tax=Triplophy... [more]
A0A3B5AIF6_9TELE7.030e-2332.99Rho GTPase activating protein 24 n=30 Tax=Percomor... [more]
A0A3B3QBD8_9TELE9.310e-2335.59Rho GTPase-activating protein 24-like n=1 Tax=Para... [more]
A0A672HML1_SALFA9.530e-2332.49Uncharacterized protein n=6 Tax=Ovalentaria TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig10contigS-latissima_F_contig10:556931..564142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score336.3
Seed ortholog evalue1.2e-89
Seed eggNOG ortholog2880.D7FL35
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0043087,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0065007,GO:0065009
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG4270@1,KOG4270@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-05_006800.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1009
Cds size696
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.5900488-UTR-S-latissima_F_contig10:556930..5572161622815357.5900488-UTR-S-latissima_F_contig10:556930..557216Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig10 556931..557216 -
1693924823.0874405-UTR-S-latissima_F_contig10:556930..5572161693924823.0874405-UTR-S-latissima_F_contig10:556930..557216Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig10 556931..557216 -
1622815357.6799119-UTR-S-latissima_F_contig10:564115..5641421622815357.6799119-UTR-S-latissima_F_contig10:564115..564142Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig10 564116..564142 -
1693924823.1913528-UTR-S-latissima_F_contig10:564115..5641421693924823.1913528-UTR-S-latissima_F_contig10:564115..564142Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig10 564116..564142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.599758-CDS-S-latissima_F_contig10:557216..5573121622815357.599758-CDS-S-latissima_F_contig10:557216..557312Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 557217..557312 -
1693924823.1049697-CDS-S-latissima_F_contig10:557216..5573121693924823.1049697-CDS-S-latissima_F_contig10:557216..557312Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 557217..557312 -
1622815357.6108882-CDS-S-latissima_F_contig10:557927..5580331622815357.6108882-CDS-S-latissima_F_contig10:557927..558033Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 557928..558033 -
1693924823.1160927-CDS-S-latissima_F_contig10:557927..5580331693924823.1160927-CDS-S-latissima_F_contig10:557927..558033Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 557928..558033 -
1622815357.6207066-CDS-S-latissima_F_contig10:559005..5591461622815357.6207066-CDS-S-latissima_F_contig10:559005..559146Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 559006..559146 -
1693924823.126314-CDS-S-latissima_F_contig10:559005..5591461693924823.126314-CDS-S-latissima_F_contig10:559005..559146Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 559006..559146 -
1622815357.6310966-CDS-S-latissima_F_contig10:560113..5602411622815357.6310966-CDS-S-latissima_F_contig10:560113..560241Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 560114..560241 -
1693924823.1479201-CDS-S-latissima_F_contig10:560113..5602411693924823.1479201-CDS-S-latissima_F_contig10:560113..560241Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 560114..560241 -
1622815357.6414812-CDS-S-latissima_F_contig10:561052..5611301622815357.6414812-CDS-S-latissima_F_contig10:561052..561130Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 561053..561130 -
1693924823.1621192-CDS-S-latissima_F_contig10:561052..5611301693924823.1621192-CDS-S-latissima_F_contig10:561052..561130Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 561053..561130 -
1622815357.6544178-CDS-S-latissima_F_contig10:562715..5628201622815357.6544178-CDS-S-latissima_F_contig10:562715..562820Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 562716..562820 -
1693924823.1733742-CDS-S-latissima_F_contig10:562715..5628201693924823.1733742-CDS-S-latissima_F_contig10:562715..562820Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 562716..562820 -
1622815357.6701355-CDS-S-latissima_F_contig10:564073..5641151622815357.6701355-CDS-S-latissima_F_contig10:564073..564115Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 564074..564115 -
1693924823.182878-CDS-S-latissima_F_contig10:564073..5641151693924823.182878-CDS-S-latissima_F_contig10:564073..564115Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 564074..564115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig10.15.1prot_S-latissima_F_contig10.15.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig10 557217..564115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig10.15.1

>prot_S-latissima_F_contig10.15.1 ID=prot_S-latissima_F_contig10.15.1|Name=mRNA_S-latissima_F_contig10.15.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=232bp
MFVCGGGATGSQGKVFGVPLVKLMQVTPGEDVPWVLKRFVGFLSKFGLES
VGLFRLAGDGVDRAILRAALDDGSQVCWDPEEEVESENECLSLTDVNMVA
QLLKAFFRELPEPLVPFSAYSKVVAIAKAAGVADARWVQAMKNILWSIPN
ANYNCLRRDFWRRSLFLFAFLRKVAAHSATNRMTSENLAIVWAPNLVRPE
DDDPFAILKDLRFQIETVRWMVDCYEQLFED*
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mRNA from alignment at S-latissima_F_contig10:556931..564142-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig10.15.1 ID=mRNA_S-latissima_F_contig10.15.1|Name=mRNA_S-latissima_F_contig10.15.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=7212bp|location=Sequence derived from alignment at S-latissima_F_contig10:556931..564142- (Saccharina latissima SLPER63f female)
GGGAGCGGTCGGGGTCTAGCTCTAACAATGTTCGTGTGCGGAGGAGGTGC
CACCGGATCCCAAGGGAAGGTGAGCGTTTGGTTGTTGGCGTTGGTGTGGG
TGTTTGTTGATGTTGGTGTTGGTTGGTGTCGGTGTTGTTTTTGGTGTTTC
GGTGTTCGTGTTGGTGAAATTCGGGGTTAACCCCTTAAGAGCTGGTCCCA
CAGATTTGGGGACAAACTACTTGGAATTAGTGTCGGGTCTTTTTTCCAGT
TCTGAATGGGTTAAAACACGTGTTGTCGTTTGTGTTGGTTGGTTGGTTGG
CGTGGTGTTGGGTGTTTTCGGGTGTTTTTCATTGGTGGTGAAATTTCAGT
GTTGGAAGAATGTGTTTGGTGTCAAGTGTTGTTTGGGGTTGTGTTGGTGA
TGGTGATGGTGATGTTGAAAGCATATGTTGGTGTTTTTGGCGGTGTTGGT
TATTGGTGGTGTTGGTGTTACTGTTGGTTGGTGTTTGTGTTGGCGTATTT
GCTGTTGCTGTTTGCTTGTTTTCGGTGTTTTGTGCTGCTGGTGGGATTTT
GAGATCACAGGTGTCTTAACTCTACCACCCCGGCACGTGCATTGCCTATA
TAGGTTTGTAGCCTCTACACGGTTCAGTAATGTTGGCAATGCTAGTCTGT
TTTCGCAGAATTTTGCCAACTCGCGCTTTCCGCGACCCGAAAGAGGCAAA
TAAAGTACTAGTAGCACTTTGTTTTTTGTGAACCCGCCGGTATTCGAATC
CCAGCCCTCATACGCCTGTAATAGTCGTATTCGAGGTTAACCACTAGACC
ACCGGGGCGATTAAAACAGGCGACGTAAAACGTGCAGTGCTGATACGTAC
ATATTAAAAGTTCATAATTTTGATGTATCGATATATCGAAGGCCAATTTA
CCGTATCGAAATCGTTTAGCCCCCCCTCCATTCCCTGGCATGCCCTCGAT
TTTCACGGTAGCGCTGAAGAACGTTTAACATCGAAATCGCATATATACGA
AGACGTATAAAACCCTTAAGTGTGTGTGTGTATTCTTCACATTAAACCTT
CCTTTCTACCCGTCGACATCCAGCACACCCAGTGTACGCGCGATCGAAGT
ATCACGCTCAGCTTGCAAATATGAGTTTCGACGAAATCTTCGATCTCACA
GCTGTTTTTTTTTTTTTTTTTTTAAAATAAATATACGTATCGTTCTGATT
TGTTTTTTGTTGTTTGCGGTATCGTACATATCATATGTATCAGCAGTCGA
AACGATTCTCGGTGGGTTTCCAGCCCTAAAAATGACAGCAATGTGCCGCC
TCTCGATAAATGATGAACACAGGTGTTTGGAGTGCCTTTGGTGAAGCTGA
TGCAGGTGACGCCTGGCGAGGATGTCCCGTGGGTGCTGAAACGTTTCGTC
GGCTTTCTGAGCAAGTTCGGACTCGAGGTGAGTAGTTGGACGCCGAAGCA
TCGGACGTTGTGGATACGCCCCCTCGCCTTTCGTAGACTAGCTGAAGGCG
TTCCTTTGTAGGGCCGACCCTGTTGTTGTGGTTGTTGGTGTTGGTGTTGT
TGGCGTTGGTGTAGGTGTTGGTGTTGTTGGTGTTGGTGTTGGTGTTGTGG
TTGTTGGTGTTGTGGTTGTTGCTGTTGTTGGCGTTGGTGTAGGTGTAGGT
GTTGGTGTAGGTGTTGAAGCTGTTGTTATTGTTGCTGTACCGGTTGGTAG
TGGTGTTGTTGGTTGTTTTTGTTGTTGTTGTTTTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGGTGTCGGTGTTGTTGTGTTTTTGTTGATGTCAACGTTGC
TCTGTTGTTGTCACTGTTGTTGCTTGTTATTGCCACTGTTCTTGTCGCTG
TTGCTGTTGTTGTTCGTGTAGGTGTCATTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTCTGTTGTTGTCTGTTGTTGCCTGTTCTTGTTG
TTATTGTCGGCGTTGTTGTTGTCGTTGTGGTCGGTCTTGTTGCTGCTATC
GGTGTTGGTGTTGTTGGTGGTGCTGGTTGTTGTCGTCGATGTTCCTGTTG
TCCTTAGGATTGTTTCGCGCATGGCAGCGCGAAGACGTCTCCACTCCACG
GTACAGCACAGCACATGGACAGAACGGTCTCAGCACAGGGACAGTGCCGG
CACAGGAGGAGGGAGTGTCTGCCTTGGTCTTGTCCGAACTAAATGCACCG
GGCAGCCGCCGAGAATATTCAAACGGTTGACATGGCTCGATTACTCATAG
TTCCATACCTCGCAGATATCACGATCTAGATGATCTTGATCCTAATTCGC
CGTTTATCACATGTTGTGCAGGATCTATACGGTACAGATCCAACCCGGGA
AACATGTCCTAGATCATGCAGATGATACGGTTCGTACCCGGCAACGTGAG
CTAGATCGTACAGATCATAGATCATACAGATCATCTATAACCTGAATGAT
ATATATCATCAAGTGGGAATGATCTGCATGATCTGTTGATCTGTTGGAGG
TGTGTATGGCATGGTGCGATGGTCGAGGAGGCATGTCGTTTAGGTTCCCT
AAAGCCGTGCCACAGGCAGAACGCGCCATCAACAACAGTGTACCTTGGCC
GTCGCTGTCGGCAGGACAGTCTTGCTGGTGCCCCACACAGCAGCAGTGGT
ATTCCTGGAATTTGCACACGATTAGGATAGCTTGCGAGAGGGTTTTCTTT
GAAGCGGTGTGCTCCATCCAGCCTGAGCGCCGCGGCTCTTTGGTATTGGA
GTGTTTCATGGTTCCTTCTCCCCTCCTTCCCCCGCCTCTCCTCTCATGTC
CCCGCCTCTCATCTCCTCTCCCTGCCTCTCCTCTCCTTTCTTCGTCTCAC
CTTGTCCTCCCTTCCCTTCCCATTCTTCCTCCTTGGATGATTGCCGGTCG
GTACTTGAGCAGTCCGTCGGTTTGTTCAGGCTAGCCGGAGATGGCGTTGA
CAGGGCCATCCTCAGGGCGGCGCTGGACGACGGTAGCCAGGTGAGCCAAT
AATGAATAGAGCCTTGTTGTAATCTCAGATGGTGGGGTATGATATTGCTC
AAACTTCAATCTGCCGCTGAATTTTAATTACGCGTGATAATTTGCAGTAG
TTTGGCGCCTAAGTTGAAGTTGTAGCACAAGTTGAGGTTGAAGCACAAGT
TGGGATTGAAGCACAAGTTGAGGTTCACAATTACTAGAGCTCTCAGATGG
TGGGGTATGATATTGCTCAAACTTCAATCTGCCGCTGAATGTTAATCACG
CGTGATAATTTGCAGTAGTTTGGTGCTCAAGTTGAAGTCGAATTACGGTT
TCAAGTCGATGCACATGTTGAAGTGGAAGCGCAAGTTGAAGTGGAAGCAC
TAAGCACAAGTTGAGGTTGAATCACAAGTTGAAGTTGAAGCACAAGTTGA
AGTTGAAGTTGAAGACGCGTGCTACGATAGGGGTAGCACTTTTCGGCCGA
AATATTTCTGTCTGACGGGGGCTCCACACAACTGAGAAACTACCCGGCAT
TCCTTTTGCGTCGATTGTGATACTTGCAGGTACCGACGTGTTTCATTGGG
TTGCTTTTAGTAGTGTTGTTTGCATCAATGCTGCTGCTGCTGTTGCTTCT
GCTTCTGCTTGTGTTGTTGGTTTTGTTGTTGTTGTTGTTGTCGCCTCCTC
GCAAACATCTGCAAGGAGTTGGGTGCCTCCCCTACAGATTTTACCTCTAC
GACGAAAGTTTTTCTTGCCTGACTGGTCGTTGGTGGTGTTTGTTGTCTCT
TGGTCTCTTGTTCTCACATCTTACACCATGCCCTACACGTGAACTGGACA
GGTGTGCTGGGACCCCGAGGAGGAAGTCGAGAGCGAGAATGAGTGCCTTT
CCCTTACCGACGTGAACATGGTGGCGCAGCTGCTCAAGGCGTTCTTCAGG
GAGCTTCCGGAGCCTCTCGTGCCGTTCAGGTGGGTTGGACTGTTGATATC
TATCCACAGACGTGCGTTTGGTATCGACTTTTCGATCTTTTGATACATGG
GTCTCTTGAGTCTTGATACATTAGATTTTCTGACCCCGTCGATGTTTCGG
TCTTTTGATTTTCCGGTTTTTGATGTTTGGAGATGTTTCGATCTTTCTAT
CTGTTAACTGTGTCGATGTTTGATACTCCGTCTTTTATATACTACCAGGT
ACCAGTACACTCTATCGATCTTTGATTGAGCAATATTTTTTCAGATTCTC
ATCAAGCAAAGGCGTCGTTTTTCTGCTACTGGCTGTACCGTTTTTTTGCC
ACACCATGTTTCGTCATGTCGTATGCCACGTGACACCTTGCCTGGTTGCC
ATGTTGTCATGTTTCACGATACCATATGCCGTCGCATCGCGTCATGCCCA
TGTTCTCGCACTGGTACCCCCCGGCGCCGTCTCACACCACATTTTGTTGT
GCCACATCAATTCAACTATTTAAAAATGCCATGTCAACCCCGTTCATGTA
AAAGCCTTAACGCCTTTAGGCAGTATTAGGGAGGACCATACATAGTGAAT
AGGGACCAAATACTGCAACAGTAGTAAAAACACGTAAATATACAGGTTTT
TGTCTGTACAGTAGGTCCTATTTACTAGTGTTTACTAGTGTTTACTATGC
TCCCCCGTAATAGCGGGACTGCAGTCCCGTTGTGCCGACAAAAACACTTG
GAATTAGAGCCATATTCAGATGTATGTATCATATGTACAGGAGTGCACCA
CTAGAATAGTTAAAATTGTTCAAGACTCTTCGCGGGTCATGACCCGACGC
GCAGACCCGATCTCGGTCCCGCGAGCTTTGACCCGCCCCCGTGAGCAAAC
CTTGAAAACATGTTATAACCCATGCCGCGTTTTGTTTGTGACATTGAACA
TGAACTGGAATGGGCAACACCCCTGCTCGCACTTTGATAATACCAGCGCG
TACAGCAAGGTGGTGGCCATCGCGAAGGCGGCCGGAGTCGCAGACGCGCG
CTGGGTGCAGGCGATGAAGAACATCCTGTGGAGCATCCCGAACGCTAACT
ACAACTGCCTCAGGCGAGATTTTTGGCGGCGCTCGCTGTGGTATATATAC
CACTTTGCCCCGAGATATAAGCACCGTTTGTATTAAATATTAATATACAA
ACGTTGCTAATATTTCCGGACAGAGTGGTAAGCCGTAGCGGGCCGCGACG
TATAGTATATGTATGCGCTGTTGTCTTTAATTCCTAACGTTCTCCCGGCT
AGTGTTCGGGAATCAACAAAGCATATTTGTGAACCAACGAAATGGTTGCG
AATGAACAAACGATTTGTGATTAATCATTTTTTTTAGTCATGCTTATTTC
TGATTATAATCAAAATCAACCGGGACTTGGTTTTGTTGTTATTTTAGCTG
TATGGCTTTTAGTAGGGTATACTATTTTTTATGAAAATATATTGTATCGA
TGATGGGTTTTATTAGAATGCTCATCATATAATCAAACATAAACAAAGTA
TGTACATATAATATGTTTTCGCCTATGAATACATCGTATGGGTTTCAGTA
TGGTATGCGATATATATATGGGTTATATTATTCGTGTGGCATTAATAGTA
TGCCATACAAAACGCTATACAAGCCAAATAATCAACTACTCATGATGCGT
CGACCATCAATGATGAACCAGTCACCAAAACCCCAAAATAATCAACAATC
GAATCAACTTCTTTTAGTTGACTATCACCAATACTCCCGGCCTGGGGCCT
TTGTGTCTTTGTAGTATGTACATACGTACACACAACGAGTAGCGTCCGGT
TCATATTGCCTTATTGTGATGCGTTTGCACCGGTGTTTTTTTTGTAATGT
TCCTTACGACGCTTCAGTTCGCGTACTTACATCTTAACATGCTTCCTTTG
TAAGACGCCTTTGTGTGAGTACTTCATGGTAGTTTTACATTGGCTGGAAG
AAAATCACACCGGGTGACCGCCATGTGGTTTGCTTGGAAGACGCTCAAAC
CGGTTATAACGTTGGACCCAATGCCGAACGTCGCTCGTCGCTTCTGCACG
CATCCGCAGGTTCCTGTTCGCGTTCCTCCGCAAAGTTGCGGCGCACAGCG
CAACCAATCGGATGACGTCGGAAAACCTGGCCATCGTCTGGGCGCCGAAT
CTCGTCCGTCCTGAGGTGAGGCCCATACGACCCGAATAATAGGGCGCCTA
CCCCAAGTACCTGATAGTCGATTAATACCCCCCCTTCTATTGCGTCCCCC
TTTTACAAAATTAACTACGTACCAGGTAGTTACAACCCGTCCCCAACCCA
AAAACCCAACCCACCCTCTTGAACACAATTGATCAATTCACACGACTACG
TATCATGTAACACACGCAGTGTTTTGTGTACGTAAACACTGAAGATATTA
CATGTACGTAGGACAACGCTGTGTTTTGTTTCAACATTCAACATGTTTTA
TCACTTATGTTTCAGACAGCAGTTCATTCACTCTATAAGCCTGGTGGCTC
CTGTTTTTTGTTTGTCTGGCATTGAGTTCTGCGTTTGTATATATCTCTCT
TTATAGTCTTCTTTTCCCCTCTAATTTTTTCCCTGTTTTGTGTTTTTTTT
ACATACCAGGTATCTCAAAAAGCAATTCATTATTAATCGTGGTTCTCACT
ACTCGTAGCTCAAGTACTACCTGGTATCATAGTATGTACGTGGAACCATA
AGCATATACCAGGTATAATAGTAATAGTGGAAATGAGATTTTGCCCTCCC
TCCCTTCCTTTGCGCGCCCCCTCGCTGCAGGATGACGACCCTTTCGCCAT
TTTGAAAGATCTACGGTTTCAGATAGAGACGGTACGCTGGATGGTGGATT
GCTACGAGCAGCTGTTCGAGGACTGACAGGCGGATCGGTCGATTTTGTTT
GGTGATTGGATTTTATTTGGTGGTGCTACGTTCATACATGTGATGCGTGT
GCTTGTTGTTGTTGTCGTCGTTGTTGTTGTTTTTGCTGTTGCTGTCTTTG
ATTCTCTTTGTTTCGGTCGATGTTGATTGATCGTTTTGCCGCTTTTTTTC
AGAGAGAGAGAGAGAGAGGGAGAAGAAAAATCGGCGGACACATCAATGGG
TTTGTTAATTTATTTATTACAGGATGCTTACAGGATGCTTGCAGGATGCT
TACAGGATGCTT
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Coding sequence (CDS) from alignment at S-latissima_F_contig10:556931..564142-

>mRNA_S-latissima_F_contig10.15.1 ID=mRNA_S-latissima_F_contig10.15.1|Name=mRNA_S-latissima_F_contig10.15.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1392bp|location=Sequence derived from alignment at S-latissima_F_contig10:556931..564142- (Saccharina latissima SLPER63f female)
ATGTTCGTGTGCGGAGGAGGTGCCACCGGATCCCAAGGGAAGATGTTCGT
GTGCGGAGGAGGTGCCACCGGATCCCAAGGGAAGGTGTTTGGAGTGCCTT
TGGTGAAGCTGATGCAGGTGACGCCTGGCGAGGATGTCCCGTGGGTGCTG
AAACGTTTCGTCGGCTTTCTGAGCAAGTTCGGACTCGAGGTGTTTGGAGT
GCCTTTGGTGAAGCTGATGCAGGTGACGCCTGGCGAGGATGTCCCGTGGG
TGCTGAAACGTTTCGTCGGCTTTCTGAGCAAGTTCGGACTCGAGTCCGTC
GGTTTGTTCAGGCTAGCCGGAGATGGCGTTGACAGGGCCATCCTCAGGGC
GGCGCTGGACGACGGTAGCCAGTCCGTCGGTTTGTTCAGGCTAGCCGGAG
ATGGCGTTGACAGGGCCATCCTCAGGGCGGCGCTGGACGACGGTAGCCAG
GTGTGCTGGGACCCCGAGGAGGAAGTCGAGAGCGAGAATGAGTGCCTTTC
CCTTACCGACGTGAACATGGTGGCGCAGCTGCTCAAGGCGTTCTTCAGGG
AGCTTCCGGAGCCTCTCGTGCCGTTCAGGTGTGCTGGGACCCCGAGGAGG
AAGTCGAGAGCGAGAATGAGTGCCTTTCCCTTACCGACGTGAACATGGTG
GCGCAGCTGCTCAAGGCGTTCTTCAGGGAGCTTCCGGAGCCTCTCGTGCC
GTTCAGCGCGTACAGCAAGGTGGTGGCCATCGCGAAGGCGGCCGGAGTCG
CAGACGCGCGCTGGGTGCAGGCGATGAAGAACATCCTGTGGAGCATCCCG
AACGCTAACTACAACTGCCTCAGGCGAGATTTTTGGCGGCGCTCGCTCGC
GTACAGCAAGGTGGTGGCCATCGCGAAGGCGGCCGGAGTCGCAGACGCGC
GCTGGGTGCAGGCGATGAAGAACATCCTGTGGAGCATCCCGAACGCTAAC
TACAACTGCCTCAGGCGAGATTTTTGGCGGCGCTCGCTGTTCCTGTTCGC
GTTCCTCCGCAAAGTTGCGGCGCACAGCGCAACCAATCGGATGACGTCGG
AAAACCTGGCCATCGTCTGGGCGCCGAATCTCGTCCGTCCTGAGGTTCCT
GTTCGCGTTCCTCCGCAAAGTTGCGGCGCACAGCGCAACCAATCGGATGA
CGTCGGAAAACCTGGCCATCGTCTGGGCGCCGAATCTCGTCCGTCCTGAG
GATGACGACCCTTTCGCCATTTTGAAAGATCTACGGTTTCAGATAGAGAC
GGTACGCTGGATGGTGGATTGCTACGAGCAGCTGTTCGAGGACTGAGATG
ACGACCCTTTCGCCATTTTGAAAGATCTACGGTTTCAGATAGAGACGGTA
CGCTGGATGGTGGATTGCTACGAGCAGCTGTTCGAGGACTGA
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