mRNA_P-littoralis_Contig1.86.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.86.2
Unique NamemRNA_P-littoralis_Contig1.86.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.86.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:525513..526258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size329
Hectar predicted targeting categoryother localisation
Exons3
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789307.5803058-CDS-P-littoralis_Contig1:525514..5256431680789307.5803058-CDS-P-littoralis_Contig1:525514..525643Pylaiella littoralis U1_48CDSP-littoralis_Contig1 525515..525643 -
1680789307.599652-CDS-P-littoralis_Contig1:525854..5259731680789307.599652-CDS-P-littoralis_Contig1:525854..525973Pylaiella littoralis U1_48CDSP-littoralis_Contig1 525855..525973 -
1680789307.6118321-CDS-P-littoralis_Contig1:526179..5262581680789307.6118321-CDS-P-littoralis_Contig1:526179..526258Pylaiella littoralis U1_48CDSP-littoralis_Contig1 526180..526258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.86.2prot_P-littoralis_Contig1.86.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 525515..526258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.86.2

>prot_P-littoralis_Contig1.86.2 ID=prot_P-littoralis_Contig1.86.2|Name=mRNA_P-littoralis_Contig1.86.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
ADEEEEEEEEDSDDAENQRKKQPVSASRGEESEEDDDCMSVQDSDDEEET
DEAAVQYMRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLER
GDALFNGRL
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mRNA from alignment at P-littoralis_Contig1:525513..526258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.86.2 ID=mRNA_P-littoralis_Contig1.86.2|Name=mRNA_P-littoralis_Contig1.86.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=746bp|location=Sequence derived from alignment at P-littoralis_Contig1:525513..526258- (Pylaiella littoralis U1_48)
GCGGACGAGGAGGAGGAGGAGGAGGAGGAGGACAGCGATGACGCAGAAAA
CCAGCGCAAGAAGCAGCCTGTGTCAGCAAGTATGTTGAAGCCTGGGAGGT
TAGAGTCGAATGAGTACGGGTGACAAAAAAACGGCGTGTTCTTTTTCCTT
CTTTCGTTATCTAGGAACCATCGCTTTTCTCTCTTTGCTTTCTCCCACGT
CCCCCCGCAAACCTGAACTCGCCTGACGAGTGTCTTTGAGTCTCACGCTC
TCCTCGTTGCGCTTGCGAATTCTGATTGGAGCAAGGTCGAGGAGAGGAGT
CTGAAGAAGATGACGATTGCATGAGCGTGCAGGATTCGGACGATGAGGAA
GAGACCGACGAGGCGGCTGTCCAATACATGCGTGGTGCTTTCGAGGATGT
TCCGGTGAGAATGGCAGTGCATATTGTTGCCTGCTCGCACATTTCAGACA
TCATGCAGCCAATGTTTCCTTTTGGTGTGACCTCGCATAGTCAGACTGGC
ACTTGTTGTTTCACTTGTGTTTCATCACCATCGCAACGAGAGCCTGTTTG
GGATGATATTTTCAATCGCTTTTATCTTTTGTTTGTCCGCGGCCGTGTGG
TTGACGATGAAGCAGAATGCTGGTAAGGTCAACGAGCTGGCCCAGAACAT
TGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTGT
CGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:525513..526258-

>mRNA_P-littoralis_Contig1.86.2 ID=mRNA_P-littoralis_Contig1.86.2|Name=mRNA_P-littoralis_Contig1.86.2|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig1:525513..526258- (Pylaiella littoralis U1_48)
GCGGACGAGGAGGAGGAGGAGGAGGAGGAGGACAGCGATGACGCAGAAAA
CCAGCGCAAGAAGCAGCCTGTGTCAGCAAGTCGAGGAGAGGAGTCTGAAG
AAGATGACGATTGCATGAGCGTGCAGGATTCGGACGATGAGGAAGAGACC
GACGAGGCGGCTGTCCAATACATGCGTGGTGCTTTCGAGGATGTTCCGAA
TGCTGGTAAGGTCAACGAGCTGGCCCAGAACATTGCGAACCATATCGAGG
ACGGTCTTCGCGGGGACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGA
GGGGACGCCCTCTTCAACGGGCGTCTC
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