mRNA_P-littoralis_Contig166.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig166.37.1
Unique Name	mRNA_P-littoralis_Contig166.37.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5L1L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L4_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.960e-29
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 1

Query:    1 RRLFQAQRTPARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL 300
            RR  +     A W+ L+ ACKGV  A++ GI AHL+ YV ++E +Y++RDMRGLY+HLK SVGL GR + GQQF+ DENGVLLR++ +I QRW  F S L
Sbjct:   81 RRAMRGNWNSATWRVLKAACKGVATAVETGIYAHLDGYVTELEEIYKDRDMRGLYQHLKRSVGLSGRQARGQQFVADENGVLLRNRDDILQRWARFFSTL 180

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BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5K556_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K556_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 9.100e-29
Identity = 54/99 (54.55%), Postives = 75/99 (75.76%), Query Frame = 1

Query:    4 RLFQAQRTPARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL 300
            R  +  R+ A W+ L+ ACKGV  A++ GI AHL+ YV ++E +Y++RD++GLY+HLK SVGL+GR +EGQQF+ DENGVLLR++ +I QRW  F S L
Sbjct:  113 RAMRGNRSSATWRVLKAACKGVATAVEPGIYAHLDGYVTELEEIYKDRDIQGLYQHLKRSVGLNGRQAEGQQFVADENGVLLRNRDDILQRWARFFSTL 211

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BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5L6W5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W5_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 5.990e-28
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 1

Query:    1 RRLFQAQRTPARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL 300
            R  F+A    A W+ L+  CKGV+  I   I  HLERYV ++E +Y++RDMRGLY+HLK S GL GR + GQQF+ DENGVLLR++  I +RW+ F + L
Sbjct:   50 RHSFKAGPNAATWRILKATCKGVKATIATSIYDHLERYVTELEAIYQDRDMRGLYQHLKRSTGLSGRQAGGQQFVTDENGVLLRNKDAILKRWRRFFNTL 149

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BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5J7L3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7L3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.210e-27
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query:    1 RRLFQAQRTPARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL 300
            RR  +     A W+ L+ ACKGV  A++ G  AHL+ YV ++E +Y++RDMRGLY+HLK SVGL GR + GQQF+ DENGVLLR++ +I QRW  F S L
Sbjct:   43 RRAMRGNWNSATWRVLKAACKGVATAVETGNYAHLDGYVTELEEIYKDRDMRGLYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTL 142

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BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5K963_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K963_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.820e-27
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query:    1 RRLFQAQRTPARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL 300
            R  F+A+   A W+ L+ ACKGV+  I   +  HLE YV K+E +Y++RDMRGLY+HLK S+GL GR + GQQF+ DENGVLLR+++ I +RW+ F   L
Sbjct:   50 RHAFKARPNAATWRILKAACKGVKATIATSVYDHLEGYVMKLEAIYQDRDMRGLYQHLKRSMGLSGRQAGGQQFVTDENGVLLRNKNAILKRWRRFFDTL 149

[Close]

BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5JQV7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV7_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.710e-27
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query:    1 RRLFQAQRTPARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL 300
            RR  +     A W+ L+ ACKGV  A++ GI AHL+ YV ++E +Y++RDMRG Y+HLK SVGL GR + GQQF+ DENGVLLR++ +I QRW  F S L
Sbjct:  174 RRAMRGNWNSATWRVLKAACKGVATAVETGIYAHLDGYVTELEAIYKDRDMRGQYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTL 273

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BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5L0X1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.530e-26
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 1

Query:   31 ARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL 300
            A W+ L+ ACKGV  A++ GI AHL+ YV ++E +Y++RD+RGLY+HL  SVGL GR + GQQF+ DENGVLLR++ ++  RW  F S L
Sbjct:    8 ATWRVLKAACKGVATAVETGIYAHLDGYVTELEEIYKDRDVRGLYQHLTRSVGLSGRQAGGQQFVADENGVLLRNRGDMLHRWARFFSAL 97

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BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5JK52_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK52_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.660e-26
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 1

Query:    1 RRLFQAQRTPARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIF 288
            R  F+A+   A W   + ACKGV+  I   I  HLERYV ++E +Y++RDMRGLY+HLK S GL GR + GQQF+ DENGVLLR+++ I +RW+ F
Sbjct:  239 RHAFKARPNAATWSIFKAACKGVKATIATSIYDHLERYVTELEAIYQDRDMRGLYQHLKRSTGLSGRQAGGQQFVTDENGVLLRNKNAILKRWRRF 334

[Close]

BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5LQV6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQV6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.910e-26
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1

Query:   31 ARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL 300
            A W+ L+ ACKGV  A++ GI A L  YV ++E +Y++RDMRGLY+HLK SVGL GR + GQQF+ DENGVLLR++ +I QRW  F S L
Sbjct:    8 ATWRVLKAACKGVATAVEMGIYADLGGYVTELEAIYKDRDMRGLYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTL 97

[Close]

BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Match: A0A6H5JYS1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS1_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.140e-26
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 1

Query:    1 RRLFQAQRTPARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERDMRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL 300
            RR  +     A W+ L+ ACKGV  A++ GI AHL  YV +++ + ++RDMRGLY+HLK SVGL GR + GQQF+ DENGVLLR++ +I QRW  F S L
Sbjct:  112 RRAMRGNWNSATWRVLKAACKGVATAVETGIYAHLGGYVTELQEICKDRDMRGLYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTL 211

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig166.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L1L4_9PHAE	1.960e-29	55.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K556_9PHAE	9.100e-29	54.55	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5L6W5_9PHAE	5.990e-28	52.00	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5J7L3_9PHAE	1.210e-27	54.00	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5K963_9PHAE	1.820e-27	52.00	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JQV7_9PHAE	2.710e-27	54.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5L0X1_9PHAE	1.530e-26	54.44	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JK52_9PHAE	1.660e-26	53.13	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5LQV6_9PHAE	1.910e-26	57.78	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5JYS1_9PHAE	3.140e-26	53.00	Reverse transcriptase domain-containing protein (F...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig166	contig	P-littoralis_Contig166:212715..213014 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	300
Hectar predicted targeting category	mitochondrion
Exons	1
Cds size	300

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789802.8350143-CDS-P-littoralis_Contig166:212714..213014	1680789802.8350143-CDS-P-littoralis_Contig166:212714..213014	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig166 212715..213014 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig166.37.1	prot_P-littoralis_Contig166.37.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig166 212715..213014 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig166:212715..213014-
coding sequence from alignment at P-littoralis_Contig166:212715..213014-

protein sequence of mRNA_P-littoralis_Contig166.37.1

>prot_P-littoralis_Contig166.37.1 ID=prot_P-littoralis_Contig166.37.1|Name=mRNA_P-littoralis_Contig166.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
RRLFQAQRTPARWKSLRTACKGVQEAIDAGINAHLERYVAKVERLYEERD
MRGLYKHLKGSVGLDGRPSEGQQFIQDENGVLLRSQSEIAQRWKIFLSGL

mRNA from alignment at P-littoralis_Contig166:212715..213014-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig166.37.1 ID=mRNA_P-littoralis_Contig166.37.1|Name=mRNA_P-littoralis_Contig166.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig166:212715..213014- (Pylaiella littoralis U1_48)
CGCCGACTTTTTCAAGCCCAACGCACCCCAGCAAGATGGAAATCTCTCCG
AACCGCCTGTAAGGGAGTGCAAGAAGCGATAGACGCGGGCATCAATGCCC
ACCTGGAGAGATACGTGGCGAAAGTGGAAAGGCTTTACGAAGAGCGTGAC
ATGAGAGGCCTGTACAAACACCTCAAGGGATCCGTGGGGCTTGATGGAAG
GCCATCGGAGGGACAGCAGTTCATCCAGGACGAGAACGGTGTTCTGTTGA
GGAGCCAAAGTGAAATCGCACAACGCTGGAAAATATTCTTGAGCGGCCTG

Coding sequence (CDS) from alignment at P-littoralis_Contig166:212715..213014-

>mRNA_P-littoralis_Contig166.37.1 ID=mRNA_P-littoralis_Contig166.37.1|Name=mRNA_P-littoralis_Contig166.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig166:212715..213014- (Pylaiella littoralis U1_48)
CGCCGACTTTTTCAAGCCCAACGCACCCCAGCAAGATGGAAATCTCTCCG
AACCGCCTGTAAGGGAGTGCAAGAAGCGATAGACGCGGGCATCAATGCCC
ACCTGGAGAGATACGTGGCGAAAGTGGAAAGGCTTTACGAAGAGCGTGAC
ATGAGAGGCCTGTACAAACACCTCAAGGGATCCGTGGGGCTTGATGGAAG
GCCATCGGAGGGACAGCAGTTCATCCAGGACGAGAACGGTGTTCTGTTGA
GGAGCCAAAGTGAAATCGCACAACGCTGGAAAATATTCTTGAGCGGCCTG