mRNA_P-littoralis_Contig166.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig166.62.1
Unique NamemRNA_P-littoralis_Contig166.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig166contigP-littoralis_Contig166:294907..295321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size416
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789801.5672646-CDS-P-littoralis_Contig166:294906..2953021680789801.5672646-CDS-P-littoralis_Contig166:294906..295302Pylaiella littoralis U1_48CDSP-littoralis_Contig166 294907..295302 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789801.5761795-UTR-P-littoralis_Contig166:295302..2953211680789801.5761795-UTR-P-littoralis_Contig166:295302..295321Pylaiella littoralis U1_48UTRP-littoralis_Contig166 295303..295321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig166.62.1prot_P-littoralis_Contig166.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig166 294907..295302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig166.62.1

>prot_P-littoralis_Contig166.62.1 ID=prot_P-littoralis_Contig166.62.1|Name=mRNA_P-littoralis_Contig166.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MRDVFSTLVCVSLSASDFFCCRQEVHRTPRSDMLSSERRGTCGETYISNK
ARSVFCGRVRVSRSFDRRHRRGGTRYSRVWSPCHLCRMTSSALLPLCILN
KISKKKKERKHTFVSRAKRMASLRVSLSDCFE
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mRNA from alignment at P-littoralis_Contig166:294907..295321-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig166.62.1 ID=mRNA_P-littoralis_Contig166.62.1|Name=mRNA_P-littoralis_Contig166.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=415bp|location=Sequence derived from alignment at P-littoralis_Contig166:294907..295321- (Pylaiella littoralis U1_48)
CGACGGATAGCAAGTGTCGATGCGTGATGTGTTTAGTACGTTGGTGTGCG
TGTCCTTGTCTGCGAGTGATTTTTTTTGTTGTAGACAGGAAGTACATAGG
ACCCCACGGTCAGATATGTTGAGTAGTGAGCGACGAGGAACGTGCGGCGA
AACGTATATTTCGAACAAAGCACGTTCTGTATTTTGTGGCAGGGTGAGGG
TTTCTCGAAGTTTTGACAGGCGTCATCGTCGAGGTGGGACGAGATATTCG
CGGGTTTGGAGCCCATGTCATCTCTGTCGAATGACGAGTTCCGCATTGTT
ACCTTTGTGTATCCTGAATAAAATTTCGAAGAAAAAAAAAGAACGGAAAC
ACACGTTCGTGAGCAGGGCCAAACGGATGGCGTCGCTCCGTGTGAGCTTA
TCTGATTGCTTTGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig166:294907..295321-

>mRNA_P-littoralis_Contig166.62.1 ID=mRNA_P-littoralis_Contig166.62.1|Name=mRNA_P-littoralis_Contig166.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig166:294907..295321- (Pylaiella littoralis U1_48)
ATGCGTGATGTGTTTAGTACGTTGGTGTGCGTGTCCTTGTCTGCGAGTGA
TTTTTTTTGTTGTAGACAGGAAGTACATAGGACCCCACGGTCAGATATGT
TGAGTAGTGAGCGACGAGGAACGTGCGGCGAAACGTATATTTCGAACAAA
GCACGTTCTGTATTTTGTGGCAGGGTGAGGGTTTCTCGAAGTTTTGACAG
GCGTCATCGTCGAGGTGGGACGAGATATTCGCGGGTTTGGAGCCCATGTC
ATCTCTGTCGAATGACGAGTTCCGCATTGTTACCTTTGTGTATCCTGAAT
AAAATTTCGAAGAAAAAAAAAGAACGGAAACACACGTTCGTGAGCAGGGC
CAAACGGATGGCGTCGCTCCGTGTGAGCTTATCTGATTGCTTTGAG
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