mRNA_P-littoralis_Contig165.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig165.61.1
Unique NamemRNA_P-littoralis_Contig165.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig165.61.1 vs. uniprot
Match: A0A6H5L9G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.600e-24
Identity = 89/189 (47.09%), Postives = 101/189 (53.44%), Query Frame = 3 
Query:   84 MCHARTTKGSQLSLSQVDEILSPFFKTMSNGGGDPAGADRRVAAALXXXXXXXXXDEYSSTQPPHRPDDRVHHRQGVPNPCG--GPGVSVGGGGARGVSVDESEDERDPCCTAGGEAAAAGVPLATDSNDSRCHQ----------RPPRRNPRRTKKIRFTGELGAFLDGGGVWNDFAVMEAERKAELH 614
            MCHA T  GSQLSL Q DEILSPFFK+  +G         RVA A XXXXXXXXX   ++T PP    DR   RQ + +P G   PG + GG             E DPC    G+ A A         DS   +          RP R + R  KKIRFTG +G FLDG GVWNDFAVMEAERKA L+
Sbjct:    1 MCHAPTANGSQLSLDQCDEILSPFFKSAPSG---------RVAVAXXXXXXXXXX--XAATYPPGPQGDRHRDRQAMADPRGDCSPGGASGG-------APTKLGEVDPCSR--GDTAVAAXXXXXXXXDSPAPEANAIPSGTSHRPRRGSKRSRKKIRFTGAMGQFLDGRGVWNDFAVMEAERKAGLN 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9G8_9PHAE8.600e-2447.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:263465..264183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size719
Hectar predicted targeting categoryother localisation
Exons1
Cds size636
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789797.8662071-CDS-P-littoralis_Contig165:263464..2641001680789797.8662071-CDS-P-littoralis_Contig165:263464..264100Pylaiella littoralis U1_48CDSP-littoralis_Contig165 263465..264100 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789797.880346-UTR-P-littoralis_Contig165:264100..2641831680789797.880346-UTR-P-littoralis_Contig165:264100..264183Pylaiella littoralis U1_48UTRP-littoralis_Contig165 264101..264183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.61.1prot_P-littoralis_Contig165.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig165 263465..264100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig165.61.1

>prot_P-littoralis_Contig165.61.1 ID=prot_P-littoralis_Contig165.61.1|Name=mRNA_P-littoralis_Contig165.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=212bp
MCHARTTKGSQLSLSQVDEILSPFFKTMSNGGGDPAGADRRVAAALETAA
AAGTTDEYSSTQPPHRPDDRVHHRQGVPNPCGGPGVSVGGGGARGVSVDE
SEDERDPCCTAGGEAAAAGVPLATDSNDSRCHQRPPRRNPRRTKKIRFTG
ELGAFLDGGGVWNDFAVMEAERKAELHKLPEQRQQSQRTVDEQRDGVQKK
SARAREGEEEEE
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mRNA from alignment at P-littoralis_Contig165:263465..264183-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig165.61.1 ID=mRNA_P-littoralis_Contig165.61.1|Name=mRNA_P-littoralis_Contig165.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=719bp|location=Sequence derived from alignment at P-littoralis_Contig165:263465..264183- (Pylaiella littoralis U1_48)
CGACCTAACTGCTGACGGAGCTGCGCTGGCGCTGAGCGTCGCTCCCCCGC
GCTCTGACCACGTCAACAACGACCCCTGCATCTATGTGTCACGCTAGAAC
GACGAAAGGTAGTCAGCTCTCTTTGTCTCAGGTCGATGAGATCTTGAGCC
CGTTCTTCAAAACAATGTCAAATGGAGGAGGTGATCCTGCTGGTGCAGAC
AGGCGGGTAGCAGCAGCGCTCGAGACAGCAGCTGCAGCCGGAACAACCGA
CGAATATTCGAGCACACAACCCCCTCACCGTCCAGACGACCGAGTCCATC
ACCGACAAGGTGTGCCAAATCCTTGCGGGGGGCCGGGCGTGAGTGTTGGT
GGCGGGGGGGCACGAGGTGTATCAGTAGATGAATCAGAAGATGAACGGGA
TCCATGTTGCACAGCTGGTGGTGAAGCAGCTGCAGCAGGGGTTCCCCTCG
CCACGGACTCAAACGACAGCCGTTGTCATCAACGACCCCCGAGGCGCAAT
CCGCGGAGGACGAAAAAGATTCGATTCACCGGCGAGCTTGGAGCGTTTCT
GGACGGAGGAGGGGTGTGGAATGACTTCGCTGTGATGGAAGCGGAGCGAA
AGGCCGAGCTACACAAACTGCCGGAACAACGGCAACAGAGCCAGCGCACC
GTCGACGAGCAGAGAGATGGCGTCCAGAAGAAAAGCGCCCGGGCACGAGA
GGGAGAGGAGGAGGAAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig165:263465..264183-

>mRNA_P-littoralis_Contig165.61.1 ID=mRNA_P-littoralis_Contig165.61.1|Name=mRNA_P-littoralis_Contig165.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=636bp|location=Sequence derived from alignment at P-littoralis_Contig165:263465..264183- (Pylaiella littoralis U1_48)
ATGTGTCACGCTAGAACGACGAAAGGTAGTCAGCTCTCTTTGTCTCAGGT
CGATGAGATCTTGAGCCCGTTCTTCAAAACAATGTCAAATGGAGGAGGTG
ATCCTGCTGGTGCAGACAGGCGGGTAGCAGCAGCGCTCGAGACAGCAGCT
GCAGCCGGAACAACCGACGAATATTCGAGCACACAACCCCCTCACCGTCC
AGACGACCGAGTCCATCACCGACAAGGTGTGCCAAATCCTTGCGGGGGGC
CGGGCGTGAGTGTTGGTGGCGGGGGGGCACGAGGTGTATCAGTAGATGAA
TCAGAAGATGAACGGGATCCATGTTGCACAGCTGGTGGTGAAGCAGCTGC
AGCAGGGGTTCCCCTCGCCACGGACTCAAACGACAGCCGTTGTCATCAAC
GACCCCCGAGGCGCAATCCGCGGAGGACGAAAAAGATTCGATTCACCGGC
GAGCTTGGAGCGTTTCTGGACGGAGGAGGGGTGTGGAATGACTTCGCTGT
GATGGAAGCGGAGCGAAAGGCCGAGCTACACAAACTGCCGGAACAACGGC
AACAGAGCCAGCGCACCGTCGACGAGCAGAGAGATGGCGTCCAGAAGAAA
AGCGCCCGGGCACGAGAGGGAGAGGAGGAGGAAGAG
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