mRNA_P-littoralis_Contig165.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig165.53.1
Unique NamemRNA_P-littoralis_Contig165.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: D7G5A8_ECTSI (Na_H_antiporter domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A8_ECTSI)

HSP 1 Score: 531 bits (1368), Expect = 3.570e-174
Identity = 306/380 (80.53%), Postives = 323/380 (85.00%), Query Frame = 3 
Query:   69 MWIVGRACGVLLACTTLISAQSAAVV-EISPVVHVATPFSALLRLPPSLALKKGGIEAEASLVDAHGGESELAKKRKLEVSARGGVFLEHELGGLLLGSIGTSTVRVRVAGETHDMQVTCVPGWVSLLPPLVTLAISIFVALLFRQQVLVALLVGIWAGALLVSVFNPLSAFLRTFDTYFVGAFVSEGNAEVLLFTFLLGGTIGLVQRSGGALGLANSLKGFMGTRTRGQVCTVTLGCLIFFDDYSSILIVGNSLRDVVRTVGVSRAKFAWLVHSVGVALASLSPISSWVGLQIGYTKAVLDALEVSPPLDGFLVVLRSLPFRFFPLFYLLLIVIVLVSGRDFGPMQRAESRGG--ATGSATVPESPASDSQLEADPTGG 1199
            M IV R CG+L A  TL+SAQSAAVV E+SPVVHVA PFSAL+RLPPS A   G  EA+ASLVDA GGE ELAK+ KL+VSA G VFLEH+L GLL+GSIGTST+RVRV GET D++VTCVPG VSLLPPLVTLAISI    L+RQ VLVALLVGIWAGALLVS FNPL AFLRTFDTYFVGAFV EGNAEVLLFTFLLGGTIGLVQRSGGALGLAN+LKGFMGTRTRGQVCTVTLGCLIFFDDYSSILIVGNSLRDVVRTVGVS  KFAWLVHSVGVALASLSPISSWVGLQIGYT AVLD+L    PLDGFLVVLRSLPFRFFPLFYLLLI+IVLVSG+DFGPM  AE  G   A       ESPAS SQLE D   G
Sbjct:    1 MTIVARLCGILAAYFTLVSAQSAAVVVEVSPVVHVAAPFSALVRLPPSYAAT-GRTEAKASLVDAQGGEKELAKQ-KLKVSAGGEVFLEHKLEGLLVGSIGTSTIRVRVGGETQDVRVTCVPGLVSLLPPLVTLAISI----LYRQ-VLVALLVGIWAGALLVSGFNPLGAFLRTFDTYFVGAFVGEGNAEVLLFTFLLGGTIGLVQRSGGALGLANALKGFMGTRTRGQVCTVTLGCLIFFDDYSSILIVGNSLRDVVRTVGVSPEKFAWLVHSVGVALASLSPISSWVGLQIGYTAAVLDSLGA--PLDGFLVVLRSLPFRFFPLFYLLLIIIVLVSGKDFGPMASAEDSGSSDAVSGDQNTESPASGSQLEGDSAAG 371
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: A0A7S0Q8N7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q8N7_9EUKA)

HSP 1 Score: 301 bits (771), Expect = 5.260e-91
Identity = 153/279 (54.84%), Postives = 200/279 (71.68%), Query Frame = 1 
Query: 1207 GGITPKAGTPLRSRNALIPFAAVIGVTFAGMILDGISKIEA--GGNEVPKTLVNILSNCDSVSVLIWASAAGWLASLTLVCGQGILTLPEAMETWMEGMKEVLEPQFVLVLAWALGHVVKDVQTAEYLSGALEAGISSSMLPALISVLCYIISYACGSTFGTMGIVFPLVGPLAWRLGNGDVDFLHHCFACILGASTFGNVCSPISDTTILTSLATGCGLGEHVRTISPYTFVVAALSIMIGSIPVGLGLYGPWVALLLGGGAMTGLVYGLGEEPAASE 2037
            G + PK GTPLR+ NAL+PF  V+  +F GM+L G+++I            +VN L   DSV+ L+W S  GWLA+L LV  Q +L+L EAME WMEGMK+VLEP FVL+LAW LG V+  V+TA++L+  L  G+    LPAL+S+L + ISYACGS+FGTMGI+ PLVGPLA +LG G  D+L HC   +LG + FGN+CSPISDTTILT LAT CGL EHV TISPY F+V+A+++++GS+PVGLGLYGP + L LG  A+ G+V  +G+   + E
Sbjct:   29 GPLDPKPGTPLRAVNALLPFGMVMAASFLGMVLQGLAQISVLPAATRPAANVVNALRFADSVTALLWGSVGGWLAALALVLSQRLLSLGEAMEAWMEGMKDVLEPCFVLLLAWGLGSVIGLVKTADFLARVLYVGLPRWALPALVSLLAHAISYACGSSFGTMGIILPLVGPLAMKLGGGS-DYLLHCIGSVLGGAVFGNICSPISDTTILTVLATRCGLQEHVNTISPYAFLVSAIALILGSLPVGLGLYGPLMGLALGTAALVGIVMIMGKPVHSDE 306
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: A0A7S0P500_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P500_9EUKA)

HSP 1 Score: 311 bits (797), Expect = 1.820e-90
Identity = 159/268 (59.33%), Postives = 200/268 (74.63%), Query Frame = 1 
Query: 1207 GGITPKAGTPLRSRNALIPFAAVIGVTFAGMILDGISKIEAGGNEVPK--TLVNILSNCDSVSVLIWASAAGWLASLTLVCGQGILTLPEAMETWMEGMKEVLEPQFVLVLAWALGHVVKDVQTAEYLSGALEAGISSSMLPALISVLCYIISYACGSTFGTMGIVFPLVGPLAWRLGNGDVDFLHHCFACILGASTFGNVCSPISDTTILTSLATGCGLGEHVRTISPYTFVVAALSIMIGSIPVGLGLYGPWVALLLGGGAMTGLV 2004
            G + PK GT LR+ NAL+PF ++I  TFAGM+LDG SK+ A   E     TLV++LS CDS++ L+W+SA GWL +L LV  Q +LTL EAM  WMEG+K+VLEP FVL+LAWALG V+  V+TA+YL+ AL AG+    LPAL+S+L + ISYACGS+FGT+GI+ PLVGPLA +LG G  D+L HC   +LG + FGN+CSPISDTTILT LAT CGL EHV TISPY F+V+A ++  GS+PVG+GLYGP   L LG  A+ G V
Sbjct:  367 GPLDPKPGTKLRAVNALLPFGSIIVATFAGMLLDGASKVLAMPEESRPALTLVSMLSECDSINALVWSSAVGWLVTLALVLAQRLLTLSEAMGAWMEGLKDVLEPCFVLLLAWALGSVIGLVKTADYLASALHAGLPRWALPALVSLLAHAISYACGSSFGTIGIILPLVGPLAMKLGGGS-DYLLHCIGSVLGGAVFGNICSPISDTTILTVLATRCGLQEHVATISPYAFLVSAAALAFGSLPVGVGLYGPLTGLALGSAALFGFV 633
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: A0A7S3SU47_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SU47_EMIHU)

HSP 1 Score: 295 bits (756), Expect = 4.140e-89
Identity = 151/268 (56.34%), Postives = 193/268 (72.01%), Query Frame = 1 
Query: 1195 EGGGGGITPKAGTPLRSRNALIPFAAVIGVTFAGMILDGISKIEA--GGNEVPKTLVNILSNCDSVSVLIWASAAGWLASLTLVCGQGILTLPEAMETWMEGMKEVLEPQFVLVLAWALGHVVKDVQTAEYLSGALEAGISSSMLPALISVLCYIISYACGSTFGTMGIVFPLVGPLAWRLGNGDVDFLHHCFACILGASTFGNVCSPISDTTILTSLATGCGLGEHVRTISPYTFVVAALSIMIGSIPVGLGLYGPWVALLLGGGAM 1992
            EGG G + PKAGTPLR+ NAL+PF  ++  TF GM+ DG +K+ +    +  P +LV+ILS+ DS++ LIWASAAGWL++L LV  QG L L EAM  W EG+KEVLEP  VL+LAWALG V+ DV TA +L+ +L  G+    LP ++++L + IS+A GS+FGTMGIV PLVGPLA  LG G  ++L HC    LG +TFGN+CSPISDTTILT LAT C L  HV TI+PY  + AA +++ GS+PVGLGLYGP  AL +G  AM
Sbjct:   11 EGGPGPLDPKAGTPLRAVNALLPFGTIVLATFGGMLADGAAKVRSLPDASRPPLSLVSILSHSDSITALIWASAAGWLSALGLVLAQGALALDEAMAAWAEGLKEVLEPMLVLLLAWALGAVIADVGTATFLARSLREGLPRWSLPPIVALLSHAISFASGSSFGTMGIVLPLVGPLAQALGGGSREYLLHCIGSCLGGATFGNICSPISDTTILTVLATRCDLQAHVATITPYALLAAATALLFGSVPVGLGLYGPLAALAVGVAAM 278
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: A0A7S2UZM1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZM1_9STRA)

HSP 1 Score: 301 bits (771), Expect = 6.720e-88
Identity = 160/262 (61.07%), Postives = 191/262 (72.90%), Query Frame = 1 
Query: 1207 GGITPKAGTPLRSRNALIPFAAVIGVTFAGMILDGISKIEA---GGNEVPKTLVNILSNCDSVSVLIWASAAGWLASLTLVCGQGILTLPEAMETWMEGMKEVLEPQFVLVLAWALGHVVKDVQTAEYLSGALEAG-ISSSMLPALISVLCYIISYACGSTFGTMGIVFPLVGPLAWRLGNGDVDFLHHCFACILGASTFGNVCSPISDTTILTSLATGCGLGEHVRTISPYTFVVAALSIMIGSIPVGLGLYGPWVALLLG 1980
            G + PKAGTPLR  NA++PF  VI  T AGM+ DG S + A       V  +++++LSNCDSV  L+WASA G+L S  LV  QG L L E ME WMEGMK+VLEPQFVLVLAWALG VV DV TAE+LS  L +G +S+ +LPAL+SVLC+  S+ACGS+FGTMGIVFPLVGPLA++LG GDVDFL HCFA IL  +TFGNVCSPISDTTILT L+TGC L  HV TI+PYT +   LS+    I VG GL      L++G
Sbjct:  255 GPLDPKAGTPLRWINAVLPFTFVIVATMAGMLADGASALRALPPQDQPVSPSVIDLLSNCDSVKALLWASAGGFLVSTILVTAQGFLNLGEVMEAWMEGMKDVLEPQFVLVLAWALGQVVSDVGTAEFLSSTLTSGYVSAPLLPALVSVLCFATSFACGSSFGTMGIVFPLVGPLAYKLGGGDVDFLMHCFAAILAGATFGNVCSPISDTTILTCLSTGCPLAAHVATIAPYTVIAGVLSLGANVI-VGYGLLTGVQVLIVG 515
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: A0A0M0JVA2_9EUKA (Na+ h+ antiporter n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVA2_9EUKA)

HSP 1 Score: 278 bits (712), Expect = 7.470e-80
Identity = 148/283 (52.30%), Postives = 189/283 (66.78%), Query Frame = 1 
Query: 1207 GGITPKAGTPLRSRNALIPFAAVIGVTFAGMILDGISKIEAGGNEVPK--TLVNILSNCDSVSVLIWASAAGWLASLTLVCGQGILTLPEAMETWMEGMKEVLEPQFVLVLAWALGHVVKDVQTAEYLSGALEAGISSSMLPALISVLCYIISYACGSTFGTMGIVFPLVGPLAWRLGNGDVDFLHHCFACILGASTFGNVCSPISDTTILTSLATGCGLGEHVRTISPYTFVVAALSIMIGSIPVGLGLYGPWVALLLGGGAMTGL-------VYGLGEEPA 2028
            G + P  GTPLR+ NAL+PF  V+  +F GM+  G++ I A    V    ++VN L   DSVS LIW S  GWLA++ LV  Q +L L EAM  W+ G KEVLEP  +LVLAW+LG V+KDV TAE+L+ AL+ G+ +  LPA I+ LCY IS+A GS  GTMGIVFPLVGPLA RLG G + FLH CF  I+GAS FGN+CSP+ DT+ILT+LAT C L  H+ T+  YT +VA ++++ G + VGLGLYGP  AL +    MT +       V G  E+PA
Sbjct:  229 GALDPAPGTPLRAVNALVPFGIVLAASFGGMVFQGLAAIAAMPAAVRPAVSIVNSLRYADSVSALIWGSTFGWLAAMVLVLSQRLLKLEEAMGAWIVGAKEVLEPMIILVLAWSLGSVIKDVGTAEFLASALQTGLPAWALPACIAALCYAISFASGSAIGTMGIVFPLVGPLAMRLGGGSLSFLHQCFGAIMGASIFGNLCSPLGDTSILTALATRCSLQLHISTVIGYTCLVALIALIFGDLAVGLGLYGPLAALGVCTALMTAIKLLVGRPVEGGKEQPA 511
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: A0A7S3C0U7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C0U7_9EUKA)

HSP 1 Score: 249 bits (637), Expect = 5.000e-73
Identity = 123/198 (62.12%), Postives = 151/198 (76.26%), Query Frame = 1 
Query: 1378 DSVSVLIWASAAGWLASLTLVCGQGILTLPEAMETWMEGMKEVLEPQFVLVLAWALGHVVKDVQTAEYLSGALEAGISSSMLPALISVLCYIISYACGSTFGTMGIVFPLVGPLAWRLGNGDVDFLHHCFACILGASTFGNVCSPISDTTILTSLATGCGLGEHVRTISPYTFVVAALSIMIGSIPVGLGLYGPWVAL 1971
            DSV+ LIW SAAGW+ S+ +V  Q +++L EAM  W EG KEVLEP FVL+LAWALG V+ DV TA++L+GAL+AG+ +  LPALIS+LCY IS+ACGS+ GTMGIVFPLVGPLA R+G G   +L  CF  ++G S FGN+CSPISDTTILT LAT CGL +HVRT   YT VV  +S++ G I VGLG+YG   AL
Sbjct:    2 DSVTALIWGSAAGWMVSMAMVLWQRLISLGEAMAAWTEGTKEVLEPTFVLLLAWALGAVISDVGTADFLAGALQAGLPAWSLPALISLLCYAISFACGSSIGTMGIVFPLVGPLALRMGGGSALYLQQCFGAVMGGSLFGNLCSPISDTTILTVLATRCGLADHVRTTIVYTGVVGLVSLVFGDIAVGLGIYGAGAAL 199
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: A0A8J2WUT3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WUT3_9STRA)

HSP 1 Score: 259 bits (662), Expect = 3.620e-72
Identity = 136/261 (52.11%), Postives = 177/261 (67.82%), Query Frame = 1 
Query: 1207 GGITPKAGTPLRSRNALIPFAAVIGVTFAGMILDGISKIEAGGNEVPKTLVNILSNCDSVSVLIWASAAGWLASLTLVCGQGILTLPEAMETWMEGMKEVLEPQFVLVLAWALGHVVKDVQTAEYLSGALEAG-ISSSMLPALISVLCYIISYACGSTFGTMGIVFPLVGPLAWRLGNGDVDFLHHCFACILGASTFGNVCSPISDTTILTSLATGCGLGEHVRTISPYTFVVAALSIMIGSIPVGLGLYGPW--VALLLG 1980
            G + P   TPLR+ NAL+PF  +IG T  GMILDG   ++A G+    T++  L+  DSV  L+W S  G  A+LTL+  Q IL L  AM T +EGMKEV+EP  VL LAWALG +++   TA +++ AL +G + +  LPA  S+L Y+IS+A GS+FGTMGI+FPL+GPLAW LG GD   L HCF C+LG S FGNV SPI+DTTILT LAT   L +HVRT  PY  +V  L +++G +PVGL L+GP   V L++G
Sbjct:  296 GAMEPSPSTPLRAVNALVPFGTIIGATLGGMILDGRKAVKASGHVGRVTVMQALAKGDSVLALLWGSTLGCAAALTLLLSQKILDLDTAMGTVVEGMKEVIEPIIVLALAWALGGIIQSTGTASFIAAALTSGGLPAWALPASTSILSYVISFATGSSFGTMGILFPLIGPLAWELGGGDQRLLTHCFGCVLGGSLFGNVFSPIADTTILTQLATRVPLTDHVRTAGPYAALVGGLCLLLGDLPVGLKLWGPLPAVGLIIG 556
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: A0A7S3RS74_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RS74_9SPIT)

HSP 1 Score: 240 bits (613), Expect = 8.370e-70
Identity = 116/208 (55.77%), Postives = 155/208 (74.52%), Query Frame = 1 
Query: 1396 IWASAAGWLASLTLVCGQGILTLPEAMETWMEGMKEVLEPQFVLVLAWALGHVVKDVQTAEYLSGALEAGISSSMLPALISVLCYIISYACGSTFGTMGIVFPLVGPLAWRLGNGDVDFLHHCFACILGASTFGNVCSPISDTTILTSLATGCGLGEHVRTISPYTFVVAALSIMIGSIPVGLGLYGPWVALLLGGGAMTGLVYGLGE 2019
            +WASAAGW+A+L LV GQ +LTL EAM  W+EG+KEVLEP  VL+LAWALG V+ DV TA YL+ +L+AG+    LP ++S+L ++IS+A GS FGTMGIV PLVGPLA  +G G+ D+L HC    +G +TFGN+CSPISDTTIL+ LA+ C +  H+ TI+PY  + A  +++ GS+PVG G+YGP   L+LG GAM  +V  +G+
Sbjct:    1 VWASAAGWIATLFLVIGQQMLTLSEAMAAWIEGIKEVLEPTIVLLLAWALGSVIADVGTATYLAKSLQAGLPRWSLPPIVSLLSHVISFASGSAFGTMGIVLPLVGPLADAIGRGEHDYLVHCVGAAIGGATFGNICSPISDTTILSVLASKCDMQAHIATITPYALLAAVSALIFGSVPVGAGIYGPLTGLILGTGAMASMVKFMGK 208
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BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Match: A0A7S4BES2_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BES2_CHRCT)

HSP 1 Score: 238 bits (607), Expect = 1.890e-67
Identity = 130/229 (56.77%), Postives = 171/229 (74.67%), Query Frame = 3 
Query:  429 PGWVSLLPPLVTLAISIFVALLFRQQVLVALLVGIWAGALLVSVFNPLSAFLRTFDTYFVGAFVSEGNAEVLLFTFLLGGTIGLVQRSGGALGLANSLKGFMGTRTRGQVCTVTLGCLIFFDDYSSILIVGNSLRDVVRTVGVSRAKFAWLVHSVGVALASLSPISSWVGLQIGYTKAVLDALEVSPPLDGFLVVLRSLPFRFFPLFYLLLIVIVLVSGRDFGPMQRAE 1115
            P W+S+LPPLVTL  S+ +     +QV++A+L+GIW+GALL+   N L A LRTFD YFVGA  S  +A V+LFT +LGGTIGLVQ+SGGALGL++ ++GF  TR +G + T++LG LIFFDDYSSILIVGNSLR ++  V +S  KFA+  H +G +LASLSP+SSWVGLQIGY  AV + +  +   D F+  L+SL FRFFPL  L L+++  ++GRDFGPM+ AE
Sbjct:   23 PRWLSVLPPLVTLVASVAL-----RQVILAMLLGIWSGALLLHGGNALIAMLRTFDQYFVGALASSEHAGVVLFTLILGGTIGLVQKSGGALGLSSLVRGFFTTRRKGLLSTISLGSLIFFDDYSSILIVGNSLRPLISLVNLSVEKFAFAAHVMGTSLASLSPVSSWVGLQIGYIAAVYEQIGWTHA-DPFIGFLQSLRFRFFPLSILSLLLVTTLTGRDFGPMRDAE 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5A8_ECTSI3.570e-17480.53Na_H_antiporter domain-containing protein n=2 Tax=... [more]
A0A7S0Q8N7_9EUKA5.260e-9154.84Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0P500_9EUKA1.820e-9059.33Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3SU47_EMIHU4.140e-8956.34Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S2UZM1_9STRA6.720e-8861.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0M0JVA2_9EUKA7.470e-8052.30Na+ h+ antiporter n=1 Tax=Chrysochromulina tobinii... [more]
A0A7S3C0U7_9EUKA5.000e-7362.12Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A8J2WUT3_9STRA3.620e-7252.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3RS74_9SPIT8.370e-7055.77Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S4BES2_CHRCT1.890e-6756.77Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:219772..227322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5A8
PFAMsNa_H_antiporter
Model size2925
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons9
Evalue6.3e-183
EggNOG OGsCOG1757@1|root,2QWQB@2759|Eukaryota
Ec32 ortholog descriptionNa /H antiporter, NhaC-like
Ec32 orthologEc-14_006840.1
DescriptionNa /H antiporter family
Cds size1155
COG categoryC
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.53.1prot_P-littoralis_Contig165.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig165 219840..224252 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789797.1622808-UTR-P-littoralis_Contig165:219771..2198391680789797.1622808-UTR-P-littoralis_Contig165:219771..219839Pylaiella littoralis U1_48UTRP-littoralis_Contig165 219772..219839 +
1680789797.2276201-UTR-P-littoralis_Contig165:224252..2243701680789797.2276201-UTR-P-littoralis_Contig165:224252..224370Pylaiella littoralis U1_48UTRP-littoralis_Contig165 224253..224370 +
1680789797.236463-UTR-P-littoralis_Contig165:224812..2249711680789797.236463-UTR-P-littoralis_Contig165:224812..224971Pylaiella littoralis U1_48UTRP-littoralis_Contig165 224813..224971 +
1680789797.245162-UTR-P-littoralis_Contig165:225282..2254201680789797.245162-UTR-P-littoralis_Contig165:225282..225420Pylaiella littoralis U1_48UTRP-littoralis_Contig165 225283..225420 +
1680789797.2581778-UTR-P-littoralis_Contig165:225647..2258581680789797.2581778-UTR-P-littoralis_Contig165:225647..225858Pylaiella littoralis U1_48UTRP-littoralis_Contig165 225648..225858 +
1680789797.2702832-UTR-P-littoralis_Contig165:226246..2273221680789797.2702832-UTR-P-littoralis_Contig165:226246..227322Pylaiella littoralis U1_48UTRP-littoralis_Contig165 226247..227322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789797.176199-CDS-P-littoralis_Contig165:219839..2201291680789797.176199-CDS-P-littoralis_Contig165:219839..220129Pylaiella littoralis U1_48CDSP-littoralis_Contig165 219840..220129 +
1680789797.1867814-CDS-P-littoralis_Contig165:222391..2225121680789797.1867814-CDS-P-littoralis_Contig165:222391..222512Pylaiella littoralis U1_48CDSP-littoralis_Contig165 222392..222512 +
1680789797.1970663-CDS-P-littoralis_Contig165:222915..2231711680789797.1970663-CDS-P-littoralis_Contig165:222915..223171Pylaiella littoralis U1_48CDSP-littoralis_Contig165 222916..223171 +
1680789797.205058-CDS-P-littoralis_Contig165:223413..2235321680789797.205058-CDS-P-littoralis_Contig165:223413..223532Pylaiella littoralis U1_48CDSP-littoralis_Contig165 223414..223532 +
1680789797.2196534-CDS-P-littoralis_Contig165:223883..2242521680789797.2196534-CDS-P-littoralis_Contig165:223883..224252Pylaiella littoralis U1_48CDSP-littoralis_Contig165 223884..224252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig165.53.1

>prot_P-littoralis_Contig165.53.1 ID=prot_P-littoralis_Contig165.53.1|Name=mRNA_P-littoralis_Contig165.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=385bp
MWIVGRACGVLLACTTLISAQSAAVVEISPVVHVATPFSALLRLPPSLAL
KKGGIEAEASLVDAHGGESELAKKRKLEVSARGGVFLEHELGGLLLGSIG
TSTVRVRVAGETHDMQVTCVPGWVSLLPPLVTLAISIFVALLFRQQVLVA
LLVGIWAGALLVSVFNPLSAFLRTFDTYFVGAFVSEGNAEVLLFTFLLGG
TIGLVQRSGGALGLANSLKGFMGTRTRGQVCTVTLGCLIFFDDYSSILIV
GNSLRDVVRTVGVSRAKFAWLVHSVGVALASLSPISSWVGLQIGYTKAVL
DALEVSPPLDGFLVVLRSLPFRFFPLFYLLLIVIVLVSGRDFGPMQRAES
RGGATGSATVPESPASDSQLEADPTGGGGGWDHA*
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mRNA from alignment at P-littoralis_Contig165:219772..227322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig165.53.1 ID=mRNA_P-littoralis_Contig165.53.1|Name=mRNA_P-littoralis_Contig165.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7551bp|location=Sequence derived from alignment at P-littoralis_Contig165:219772..227322+ (Pylaiella littoralis U1_48)
CTCGTGCTTGATCACTGAGTCCACACATTCAAACCACCGCCACCGACTTC
GGTGATTGTCTTTCAGAAATGTGGATCGTCGGTAGAGCTTGTGGTGTTCT
TCTAGCGTGCACGACGCTGATATCAGCACAGTCTGCTGCTGTTGTTGAAA
TATCGCCAGTCGTACATGTCGCAACCCCATTCTCCGCGTTGCTGCGGCTG
CCTCCATCCTTGGCCCTCAAGAAGGGAGGTATCGAAGCTGAGGCAAGTCT
CGTCGATGCGCACGGAGGGGAGAGCGAACTAGCGAAGAAGCGGAAGCTGG
AGGTTTCTGCCCGTGGAGGGGTGTTCTTGGAGCATGAGCTGGGGGGGCTT
CTCCTCGGGTGCGTGGGACTCGGGAATCCAGTTCAAATAGGATCGCATTC
CAGTATCGTATCATACGCATGATCCGTGCCGTTCACGTCCCATTACTGTA
TACCATCATGGTATGACACACACGAAACACTACAGCAGTAGTTGATTGGC
GTGGGTGTCAAGGCTGTTCTCTCTCCGAGACACCCCTGTTGCTGTCGAAT
TTTCTGTATATCGCCCTGTGTCGTGCAGTCCCGCCGACGAGTGGCGAAAG
TCTGCCGTGTCTCGGGTTTAATATGAGGACTTCACCTCTTCCGAGTCGTT
TGGCCAGTATCATATCATGAGTTGGGGTACTGCTGTATCAACATCAACAT
CAATCAACACATGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGAACCG
CAAGGTGCAGCCTAGTGTGCCAGAGAATATGGGATGACATCACACATGCC
ATTACTGTACAACAGTTTCAACAGGGGTATGCTCTCGACTGCTTCTTGTA
CACGTACTCGTACCAGGTATGATATAACAGCAGCACCAGGTATCTGCAAG
ATGTTGTATGTGATGCTTCGAAGGACGAAGCACCGTGTGTCATTTTCGAA
GAGCTCTCGACGAGATGGTTCCAACAAGCCGGCTGCCTTTACGGCACCGA
CATTCTTCCTGCTACTCGCAGAGACAGGACAACTTTGATTCCCATCTCAG
TGCGTGCCTGTGGATTCCTTGTATCATATCATATCATATCATATCATGCA
TATGACAGTACGTTGTACTTGCATCTTCCCAATTTGTAACAAATGCGAAA
TAACTGCAAGGGCGAGCTGAAACAGCGACCTAGTACCTTCGCGGTGCAAA
ACCAACCAAGCTATCGGCCTCTGCTGACGGTTGGGGTTAAGGTTGTTAGG
GTTAGGTTTCTGTCAGGTTGGGTCGTGTTTGGTCGGTGGTGGATGTTTAT
ACGAGCTGGGCCGGCCAAGAGGCTCAGATTTTTGTGCGTTGCTTGTGCAC
AACCCAATTTGTATCCGTTTCCCATGAAAATTTGACAGACGGTGCCAAAG
ACATATGCGGACGCATTTATGTGTCTACATCCGATTTTTTTTTTTTTTTT
CAAGAATTATGCCCGATACGGCGTTTGGGGTGTTGACAATAGCGCAGCTA
TCTCATGAAAAAAAAAAagAAAAAAAATGGAGGCGCATAGGATTGTTGAC
ATGCATGTTGCGAACTACCACACAAAATTTGGTGGAAAACAGACATGATT
TGCGCTGTGCAGATGAAAATCCCCATGAGCACCCAGCAAGCAGCAAAATT
GCCTCAGAGGCCATACATGATGTATTTCTCGAAAACCCCTGAATGTTGCA
GCCGCCTAACCGAGCAAGTGTTATAAAAGAGCGTGGGAAACAACTACGTG
CGTTATTCTACCCTAGTTGACCGACTTAGGGCAGGTCGCCCTTCCGACCC
TCTTCCCAACTCGTGCGCCACCGAAAGGCTGCCAGCTCCGCGTCCTTCCT
CGAAGGAAACTGTGTTGACGTCACCGGTTTGGGCTTGTGGCCGCACCCTC
GCGAATACTGCAAACGCAAGCGGCACTTCCCGTTCTATTTATTCATGACG
AATGTCGGGTGAGAGGTCTTCTGCCACGCCCGCCTGGGTGGATCGCTCGA
CTTCATGGTGTACGCAAAGCATCGACCAGTGTGATGAAGCGCGAAGCGCC
TCGTGGAGGAAACCGAGCAAACGCATTTTTTTGAAATTCCGCCGCAAAAA
AACTGAAAATACAACGGTTTCACCTAAGCTAAATTGAGTATTATTCATTG
CTGCTATGGTTCCAGACGTTGGAAATCGTTTGATTAAGAAACCACGTATT
TGTGCCTACGCACGCTGATTGGGCGATTTCAGCAATACTTTCAGTGACTC
GTTATTCGCTGTGGTTCGTGAGATATGGTCCTCGGACAAAATCTGAGCTT
CTTGGCCGGCCCAGCTCGTAGGCAAAAGGAGGTACCGCGCAGTATTCAGA
TTGGGGGTATTGATCAGCGTGTTTACCTCCACAGATGACAAAAATAATCA
ACACGCAGCTTTTGCAGGTGCATCTCTCATTTGTTCCCTGACACGAACCT
ACGCGCGCTCGTGTGTGCGTGTGTGTGTTTGTGTGATGTGTGATGCACAC
CCCGTTGTACACGGGTAGTATTTTAAAGCCAGATTGTCATGGCCGGTCCT
TCCTTTTCGTCGCTGGACCTTGTATCCCATGTACATGTGTCCGTATCGCA
TCTACTCCGGATACCTGCAGATCAATCGGAACAAGCACGGTACGGGTGCG
AGTTGCTGGCGAGACGCACGACATGCAAGTCACTTGCGTGCCCGGGTGGG
TGTCTTTATTGCCCCCGCTAGTTACTTTGGCCATATCCATCGTCTACCAA
CAGGCAAGAGACTATACCATATCATGGGTGCCTTTTGATTATATGTTAGC
ATGCGATTAGAACCCGCGAAAACAGCGACAACAGCTGTTGGTGCGCGTTG
TACGTTGTCTGTCATGAACTGCTGTAGAGCATCAACCTTACCGCGCGATT
AGCCACGCCAGGTGTTGCATGCGTATGAAGTGTTATTGGCGCAGACGCAG
GGCAGGCGCTCGTGTTGAATAGGTCAGGAACGTGCACCGGGGATGAGCCT
TGGGATATACAAATGTTTACGCGCATTCCTTTCGGTTGCATTCCGGGACG
CTTGACCTTTCGACTTTTACAATCACGACAGCCGCATTAGCGCTGCTGTG
CTGTGCCATGCACGCATGCATGCAAAGAATGCAAACGAGACGAGTTTGTC
GCACTGCTGTTTCGTCAACAGGTTCTGGTGGCACTGCTCGTGGGAATCTG
GGCGGGAGCTCTGCTGGTGTCTGTGTTCAACCCCCTCAGCGCGTTTCTTC
GGACGTTCGACACGTACTTCGTTGGTGCTTTCGTCAGCGAGGGTAACGCG
GAAGTGCTGCTCTTCACCTTTTTACTCGGAGGCACGATCGGACTGGTTCA
AAGGAGTGGCGGTGCGCTGGGCCTCGCGAACTCGCTCAAGGGATTTATGG
GTGAGGGTGGCGGCTGTGTCTGTGATGGTGGGTTGTGTTTCTGCTGAAGT
ACCCTGAGCAGGAACATGCAGACCCCTGCCGTATGTATGTAGACTTGTTA
GATTCGGGGCAGAATCGTTTGTATTGGCGTGACTGTTTAGTCTTCTCCTC
AGGTCGATGGTCGCTATCTCACGACCTCCAGCCTCGTTTGTTTTTCGCTT
CCTCCTCCGTTCACACCGCTTATGCGTGATGTTATCTCGCAGGAACACGG
ACTCGGGGGCAGGTCTGCACAGTAACGCTCGGCTGCCTAATTTTCTTCGA
CGACTATTCCAGCATCCTCATCGTCGGAAACAGTCTTCGGGATGTCGTCA
GAACTGTTGGGGTGAGAGACGAAGATGTGTTGATTTTGTGGCTAGTTGCC
TCCAAGGGTGTTCCTATTGCTCGAACTGGTGCAAGTTGCGACAGATTACT
ATCGCGGCGGCCATTACTAGACGTTTATTCACCGTTAAGGCGTAATCTTG
GTTGCATATGTCGAGCGGCTCGGGTGCGAAGTTGGTTTACGCCTTTGACT
TTCACCAGTGATGCCATGCTTCCTCACGCGATTGTCTTGAATTGCGGCTT
CGGCCCAGGGAACCTCGTGAAACATACAATCGTTGAATGTGACAAAGGAT
CGTTTGGATTGATTCGCACCATGCGGGTACCGTCGCGCGTTTTCCCTCTC
TTTGCTTGGTAGGTCAGTCGTGCCAAATTCGCGTGGCTTGTCCACAGCGT
TGGCGTCGCGCTGGCTTCCCTCTCTCCCATCTCTTCATGGGTCGGGTTGC
AGATCGGCTACACTAAGGCGGTGCTGGATGCTCTTGAGGTTTCACCGCCG
CTGGATGGCTTTCTGGTCGTGCTCCGCTCCCTCCCTTTCCGCTTCTTCCC
TCTCTTCTACCTCCTACTCATTGTCATAGTGCTGGTGAGCGGTAGGGACT
TTGGACCGATGCAGAGGGCTGAGAGCCGCGGTGGTGCCACGGGTAGCGCA
ACAGTGCCAGAGTCGCCAGCATCGGATTCCCAGCTCGAGGCGGATCCAAC
GGGAGGGGGGGGGGGGTGGGATCACGCCTAAAGCGGGGACACCTTTGCGG
TCTAGGAACGCTCTGATTCCGTTCGCGGCCGTGATTGGTGTGACGTTCGC
GGGCATGATCCTGGACGGCATATCTAAAATCGAGGCTGGCGGTAACGAGG
TGATTGGCTCAATCAAAGGGTGTGTCGTTCGGGTTGCGGGATTCCGGTTG
CTTTTTAGTGATGTGCGGACATGTTGTTTTGGTTGTTGGGAAGGCTTTCA
GCGAAAGCTTGGCATGCAAGAATGGAGTACACGTTATCGGCTATGGTCGG
AGTTCGCTCCACGTGGGAAGAAGCAGGCTACGACTCTTTTTCACGCAGGA
GAAACAACCACGACTCCGCAGCAAAGGAGTACGGCACACCCCCCGCGCCA
ACCGCGCCAACTACCTGCATTCTTGTGACGTGCCTGCTTCCCAAATTCAT
CGTGCATGTGTCATATATTTTCTCTTCCTCGCTAGCCCACCCACTCCGCT
GAGCGTTTTGCTGTGGATTGGTTTCGAGGGCATGCACGCAAGCAGCAACG
CGTCAATCAATACATACCATCATTGCTTGTTTTTTTTCAAGGTACCTAAA
ACGCTGGTGAACATCCTGAGCAACTGCGACAGCGTGTCGGTGCTCATCTG
GGCGAGCGCGGCGGGATGGTTGGCGTCGTTGACGTTGGTGTGCGGCCAAG
GCATCCTCACCCTTCCGGAGGCTATGGAGACCTGGATGGAGGGCATGAAG
GTGAGTTGTGATGCGGATCGAAATAAGTGGTGCGGCACAATTCGCGTTGT
ATAAATATTCCCCTGACGGCGTATGTGGCCCTCCGAATTCCCGGCCTGCA
AGTGTCTTAAGGCAAAAACAATTTCGTGTGATCATTTGCTCGTTGGCAGT
CAATCGTATCTGGATTTATTTCCGGTATGCGGGATGCGCAGTGCGCGGGC
TTCTCCCAAATTTTGCCACGCCATAGGTTTTTGTACGCTAAAGTTGCCTC
CACAATACGTTCTCTGCTGCGTTTGTATTGCTGTACACTCAATTTAAACC
CAACCATTCAGGAAGTCTTGGAACCGCAGTTCGTGTTGGTGCTTGCGTGG
GCCCTCGGACACGTAGTAAAGGACGTGCAGACCGCCGAGTACCTCTCTGG
CGCGTTGGAAGCTGGCATTTCTTCCTCCATGCTCCCGGCACTCATATCGG
TGAGGAGGGCATCGTCAGCGCACAATTATGTTATACACACCATTCTCAGG
CCGAGGCTGCTCCGATACCACCGTTGTTTTGAAATAGGGAGGGACCATCG
CGCATTGCTGTTGTGTGGTACATATTGCTGGCTTCGCCGCGATACACACG
CCGAGGTCTTGCAAGAGACTGTGAACCCTACCACGGATTTACCACCGCTT
CCTCTGTTGTGCTCACGTACATCCAGGTCCTGTGCTACATCATATCGTAC
GCGTGTGGGAGTACCTTCGGGACCATGGGCATTGTGTTTCCCCTCGTGGG
TCCCTTGGCGTGGCGATTGGGAAATGGAGATGTGGACTTCCTTCACCACT
GCTTCGCCTGCATCCTCGGCGCGTCCACATTCGGGAACGTTTGCTCGCCG
ATATCGGACACCACTATCCTCACCTCTCTAGCAACAGGTGAGCTGGATAT
TGTCAACCTTCTCGCAGCCGAGGTATTTAGCTCTACCTGTTTCGATATGC
TTACGCACCGAAAGTTCGGCACGATAACAAATAGAAAGTTTTAGAGCTCT
GTGTTGCCTTTGTGATCGTGTTGTACATGTCTTCAATAGGCGTACGGTCA
ACCATCACCTCCTCGCCGCTCCGATTTCTGAGTCGGCGATTCATACGCTT
ACTTGAACAAGCTTAGAGGAATTCCCCATCGTTGGAACCGACTCAGAGGC
AAAAGGATGTATCATGCATCATTTGTACGATAGAAGTTCAAAGGAGTGAA
GGCAAAACAACCAAGAAGACCTCTGATCCCCCTCCCCCCCACAATCACAC
CCCCACCTGTCTACCCCGCCCTCAGGCTGTGGTCTCGGTGAGCACGTCCG
GACCATCAGCCCCTACACGTTCGTGGTGGCCGCTCTTTCCATTATGATTG
GTAGTATACCAGTGGGGCTGGGCTTGTATGGCCCCTGGGTAGCGCTATTG
CTCGGGGGAGGGGCCATGACGGGGCTGGTCTATGGCCTGGGAGAAGAGCC
AGCAGCATCCGAAGGAGGGTTGAAGAAGGCCGACTGAGGGACACATGTGA
TAAAACATGCAGTAGTTCGTTGGGGCGTTCAAAGGTACACGCCCGCAAGA
TCTACTTGTACTAGACGCCGTAGATGTTGTTGTGATAGCGCCTCGCTCAA
GCACATAAGGACAGCACTACTATTTGAGCCATCCTGGCGGCAAGGGGTCC
CTAAGGTCTACATATATACGAAGTATATAGTTAATGTTCCACTCCTTGAA
AAAGGTTGGTATCTGTTGGGGCTAAAACAATACTGAAGCAAGCAGTGATC
AAATTCCCATTTCATTCACACACTGCTATTGTAGAGGAGTTTAGAGATTT
TTTTTCAACAAGAACGCATTCCGCATAAATCGTTGAAGGTGAGCGTACAC
GGCTGCTGCTGCTGCTGCTGCTGCTCTTGATGGTGTTGTTGCCGCCCTTT
GCTATTCGGGGTGTAAGAGTATTTTTCGACGTGGTGACTGCTGTCATCTC
CGCGGGCGGGACTGACCGTCGGTTCGTGCGCCGTTGGTTGATGGTTGATG
GTGGTTGCTGGCTGCGGGTCGCAGGTAGCTGGTGACTTCGTCATTTGTTT
GCGGCAAAATGAGAGAGTGCGAGAGAGGCAGGGGTTACGCTGGAGAGACA
ATGCAATCAGATCCTCTGCATATTCGTGCTGCTGTACCAGTAGATGTACA
TAATTGCTTGAACAGGAGGAGGAGGTGTTCACAGGAACCCTCTTTGTAAC
GAACTCAAGATTAATATCGTGCTTTTTGTAGACCCGTCTCACGCCGCGGG
TGTACTTCCTTTCCTCGATGTTTTTCTGTTCTTTTTTTTTCTTCCGTGAA
GCGAGAGACAGGGACAGAGGGAGGCATATATCATCCACATGGTCGTAGGG
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig165:219772..227322+

>mRNA_P-littoralis_Contig165.53.1 ID=mRNA_P-littoralis_Contig165.53.1|Name=mRNA_P-littoralis_Contig165.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1155bp|location=Sequence derived from alignment at P-littoralis_Contig165:219772..227322+ (Pylaiella littoralis U1_48)
ATGTGGATCGTCGGTAGAGCTTGTGGTGTTCTTCTAGCGTGCACGACGCT
GATATCAGCACAGTCTGCTGCTGTTGTTGAAATATCGCCAGTCGTACATG
TCGCAACCCCATTCTCCGCGTTGCTGCGGCTGCCTCCATCCTTGGCCCTC
AAGAAGGGAGGTATCGAAGCTGAGGCAAGTCTCGTCGATGCGCACGGAGG
GGAGAGCGAACTAGCGAAGAAGCGGAAGCTGGAGGTTTCTGCCCGTGGAG
GGGTGTTCTTGGAGCATGAGCTGGGGGGGCTTCTCCTCGGATCAATCGGA
ACAAGCACGGTACGGGTGCGAGTTGCTGGCGAGACGCACGACATGCAAGT
CACTTGCGTGCCCGGGTGGGTGTCTTTATTGCCCCCGCTAGTTACTTTGG
CCATATCCATCTTTGTCGCACTGCTGTTTCGTCAACAGGTTCTGGTGGCA
CTGCTCGTGGGAATCTGGGCGGGAGCTCTGCTGGTGTCTGTGTTCAACCC
CCTCAGCGCGTTTCTTCGGACGTTCGACACGTACTTCGTTGGTGCTTTCG
TCAGCGAGGGTAACGCGGAAGTGCTGCTCTTCACCTTTTTACTCGGAGGC
ACGATCGGACTGGTTCAAAGGAGTGGCGGTGCGCTGGGCCTCGCGAACTC
GCTCAAGGGATTTATGGGAACACGGACTCGGGGGCAGGTCTGCACAGTAA
CGCTCGGCTGCCTAATTTTCTTCGACGACTATTCCAGCATCCTCATCGTC
GGAAACAGTCTTCGGGATGTCGTCAGAACTGTTGGGGTCAGTCGTGCCAA
ATTCGCGTGGCTTGTCCACAGCGTTGGCGTCGCGCTGGCTTCCCTCTCTC
CCATCTCTTCATGGGTCGGGTTGCAGATCGGCTACACTAAGGCGGTGCTG
GATGCTCTTGAGGTTTCACCGCCGCTGGATGGCTTTCTGGTCGTGCTCCG
CTCCCTCCCTTTCCGCTTCTTCCCTCTCTTCTACCTCCTACTCATTGTCA
TAGTGCTGGTGAGCGGTAGGGACTTTGGACCGATGCAGAGGGCTGAGAGC
CGCGGTGGTGCCACGGGTAGCGCAACAGTGCCAGAGTCGCCAGCATCGGA
TTCCCAGCTCGAGGCGGATCCAACGGGAGGGGGGGGGGGGTGGGATCACG
CCTAA
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