mRNA_P-littoralis_Contig165.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig165.41.1
Unique NamemRNA_P-littoralis_Contig165.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig165.41.1 vs. uniprot
Match: D7G5B2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B2_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.800e-58
Identity = 193/218 (88.53%), Postives = 202/218 (92.66%), Query Frame = 1 
Query:    1 MKRGKRCFNQSCSAAAPFASPSNPEVHACEIHKKRDFVNMRNKRCLAPGCYRNPHYGVSRLIDPNSKAQYXXXXXXXXXXXXXXXXXXXXXXXXXXRFSLPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDRVLIPGSAMKRGKFCEVHCNVNELMDKEAASSDGTSSDKKRSRVWMTTM 654
            MKRGKRCF QSC A APFASP  P+VHACE+HKKRDFVNMRNKRCL PGCYRNPHYGVSRLIDPNSKAQY   XXXXXXXXXXXXXXXXXXXXXX RFSLPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDRV+IPGSA KRGKFCE+HC+VNEL+DK+  S+DGT+SDKKR R WMT M
Sbjct:    1 MKRGKRCFIQSCLAPAPFASPLQPDVHACEVHKKRDFVNMRNKRCLEPGCYRNPHYGVSRLIDPNSKAQYCTKXXXXXXXXXXXXXXXXXXXXXXPRFSLPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDRVVIPGSAKKRGKFCEIHCDVNELVDKDV-STDGTASDKKRGRAWMTGM 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5B2_ECTSI1.800e-5888.53EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:156410..161066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1392
Hectar predicted targeting categoryother localisation
Exons6
Cds size1392
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.41.1prot_P-littoralis_Contig165.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig165 156410..161066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789796.251622-CDS-P-littoralis_Contig165:156409..1565381680789796.251622-CDS-P-littoralis_Contig165:156409..156538Pylaiella littoralis U1_48CDSP-littoralis_Contig165 156410..156538 +
1680789796.2628376-CDS-P-littoralis_Contig165:157432..1575351680789796.2628376-CDS-P-littoralis_Contig165:157432..157535Pylaiella littoralis U1_48CDSP-littoralis_Contig165 157433..157535 +
1680789796.2721207-CDS-P-littoralis_Contig165:158820..1589541680789796.2721207-CDS-P-littoralis_Contig165:158820..158954Pylaiella littoralis U1_48CDSP-littoralis_Contig165 158821..158954 +
1680789796.283415-CDS-P-littoralis_Contig165:159474..1597611680789796.283415-CDS-P-littoralis_Contig165:159474..159761Pylaiella littoralis U1_48CDSP-littoralis_Contig165 159475..159761 +
1680789796.2935872-CDS-P-littoralis_Contig165:159987..1603221680789796.2935872-CDS-P-littoralis_Contig165:159987..160322Pylaiella littoralis U1_48CDSP-littoralis_Contig165 159988..160322 +
1680789796.3049767-CDS-P-littoralis_Contig165:160662..1610661680789796.3049767-CDS-P-littoralis_Contig165:160662..161066Pylaiella littoralis U1_48CDSP-littoralis_Contig165 160663..161066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig165.41.1

>prot_P-littoralis_Contig165.41.1 ID=prot_P-littoralis_Contig165.41.1|Name=mRNA_P-littoralis_Contig165.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=464bp
MKRGKRCFNQSCSAAAPFASPSNPEVHACEIHKKRDFVNMRNKRCLAPGC
YRNPHYGVSRLIDPNSKAQYCTRHKSPGMQNVNGGRCAGPDCSKQPRFSL
PGEKGKYCSKHREEGMVDVLYTPCAAEGCRKHPHFGYVEGGPRYCAQHRA
EGMVDVKHRRCAVKSCRKDRVLIPGSAMKRGKFCEVHCNVNELMDKEAAS
SDGTSSDKKRSRVWMTTMDDDKEYMSSESSQRGSSMGDVTSNMSYDYSSS
RSDVRPSIYDAAQGLAHLAMLACRERAPPYAGPEPESTMSRGYGHDRDHA
PCQHTGHPENFHRDTSRAAAGREPSLPEFDHRAKSNGTRNFFYSAGSSGP
ERDPYPMFSRDCRDGRDMGQPDAPFEAERPRVSPDLRDGGSCSSNSGGTG
APPSGPAPPFRLRYFEPKPNSSEYSAYPCPWEYTREGRGGRWAEGGSTRG
SVPASGWSHSSTS*
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mRNA from alignment at P-littoralis_Contig165:156410..161066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig165.41.1 ID=mRNA_P-littoralis_Contig165.41.1|Name=mRNA_P-littoralis_Contig165.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4657bp|location=Sequence derived from alignment at P-littoralis_Contig165:156410..161066+ (Pylaiella littoralis U1_48)
ATGAAGAGAGGCAAGAGATGTTTCAACCAGAGCTGCTCGGCCGCGGCTCC
CTTCGCAAGTCCGTCGAATCCCGAGGTCCATGCCTGCGAGATCCATAAAA
AGAGGGACTTTGTCAACATGAGGAACAAGGTGAGTGTTGGGGCTGCTCTT
CGCTGTCCATCTCACAACCACAGCCCGAGTATGACGGCGACACCCTCGTC
GAATGTAAAGCGTGAAGGCTGAGCTGCGAACGTTGCTGTGGGTAAACCCT
GCTGTAAGCATTCACATGTGCTCCCGATACCAATCTCTTGACGTGCATCC
GCACACTGCCGTACACCCAAGCCGGCGCGAATAGATTGTGTCTTCTCTGC
ACCACCGGCGTACCCGCGCTGCCGCTGCTGCTGCATTGCTGCCACTGCTG
CTGTCACACTCCCCAACAGCAAAGAAACCAACAGTACTGTAGAGATTGGC
ACGATGGATGAGGGTGTCCCACGGTAACAACGCAGCCATCGTGGCGGGTG
TGCAGAGCATCTTCTATCTTGCAGCATCGTGCCTGCTGTGCGAGTTACAG
CAGTAGGTGTGCGTGTACGTAAGGACGACGGCTAAACGACACGAAGAAGG
CTCGACGAAATATTCCGCGCATGTCTTGTCAAGCGCGTATGTATCAACCT
CACGCGGGACTGTAGTGAAGGAGCGTGACTTCGTTTCTGTTTGCCTTGGT
CATGCGAGCCTCCTGACCACGAAGTCATCCATGCTTGAAGTGTGGTGGTG
TCGGGGGCTGCCCCCTCCGTTGAGGATACGCTATATGTTCCTCGCGAACC
GGTATTCATATAATGTCAGAGTATCAAGAAAACCGAAACCGCGTGTGCGG
CGGAATTAGACTAGATTACACCAAATTATTGAACGCGTTTCTCCGACAGA
CTGTGCGTGTATGTTTGTCCTTCTCCTGAAGAACTCGCTTCATCTGACAC
ACCGTATCATATGTGGGCTCGCTTGGGTTCACGCCCCCGCCGCTCGCATT
GATGTTGCCCGATTTTGCTGCAGCGCTGCCTGGCGCCTGGGTGCTACCGC
AACCCGCACTACGGCGTGAGCAGACTCATTGATCCAAACAGCAAGGCCCA
GTACTGCACCAGGCACAAGTCACCCGGTGAGCTTGGCGTTGATACCGTAA
CCACTGCTTCTGTATAATAAGAGGGCTTAATATCTACCTGCGAAGTGTTC
AGAAGCATGTGTGTAATACTCCGAAGTAGTAGCAATGATCTGCTCCCTTC
TCTCTGTTCTCTCTCTGGTTCTGCTTTGCGAGCTATTGTAAAGTTCACAG
GTACACATGATAATATGAGCGTCTCCTCGGCGTATTGGAAGTTCACTGCA
GTTGCTGTTGGATACCAACAGCCAAGAACGTCTCCGCTCTTCTTTTTCTG
GGTTATTTGGGAATGCTCACGTTTTTCACCACCAGATTCCATCCCTAAAA
CAAGCTGGTATCATTCCCGCAATGTACAGAAAGCAGATCGGCCATGCACG
TAACCGTTTGACACAGATTTGCAGGACGGTCGTGGATGAAGTAACATGCT
TCAACGATTCATAACGACAGCATCGCCTACTTTGTACGAAGTAGAAGAAT
ATGTCAGTATTTTCACTGCAAGTATAGTCTACCGGCCAGTTAATTAATAA
CGTGCGTTTTGAATCCACAAGCTGGAGTAGATGAAGTTGAAAGCCGTGTC
CGCAGCAACACTCCTCCGAACACTGCTAGTCCGCATCTTCGATGTGCGAT
ATTTTTTCGAGACGTATTTTTATTTCTTTCTTGCGGTAACATTTTCTTCA
TAAGAAAAATGAAAAAAGGGAGGAACGCAAAGGATATTTTGTTTATCAGT
CCCTCCGGAAAAGCAGCGCAGCTGTAGTATGTATGACGGTAGTTGTGCTC
ATTTTTTTTTACCTGGACTGCTGCTGCCACATTCTTTTTGGGTTATTCAC
CTAAAACATGTAACGCGCACAGTTGTGGTGATCTTCGTAATCTGCGTACA
GAACTTTCCAGATCGGCTCTTGATATCATCATGTAGTTACGCGTGATGTG
CGGTTATTAGCCTTGCTGCTTTGAAAAAAATAGGAGAGCCCTTTCAAGTA
CCCTAAACACAACGGAAAATTGCCGCGGTATTATATACCATGGTTAATAC
TGCACGGGAGGCAGCCCCGGACGAAACGTTCGTGTGTGGTGAGTGCGGCG
GCGTAATTGAAGCATGCTCTCGCTTGAGGAAGTATCGAGTGCATTACAGT
GCTTAAAGCACTACCTTTTTCCGTATTCGGTATATATAGAGCAGTGTCGG
TAGCATTGAGGGTGGAACTAAAACTAAATACCAGAACATGAACCACTGGC
ACTTGTGCCCGTATACCTGGCCTTGGGCGTTCCGGAAACACTCTCTCGCT
TGGTTGCTCAGGTATGCAGAATGTTAACGGAGGGCGATGCGCGGGGCCAG
ACTGCTCCAAGCAGCCCCGCTTTTCTCTGCCTGGAGAGAAGGGCAAGTAC
TGCTCCAAACACCGCGAAGAGGGGATGGTCGACGTTCTCTACACGGTACG
CATAGAAACGCAAAAAACATATAAACGAAAAACAAAGTGTTTTCGTTTGT
TTCTGGTGACGCCGGTTTTTCAACGGCAGTTGAGCAGTATAAGAGCAGGA
AAACCTTGTCAAATATCGTATGCGTGTGTGGTGAGCGCAATCGGGGCTCA
AAATGATATCATGTCCGTCTCAATTCGTCACGTGCGTCCTCACGGATCAT
GCCCTTTGGAGAAGACTTCCATGTGTAAACTAACACGCTGATATATATGT
ATGATGTGTGACAACCAAATGATGGATATGACGGTTTCCGACCTTGTTTG
CTCGGCCACGAGTTTCTACGTAAGTCGCTTAGCGCAATGATGGGCTGATA
CCTTCTGATCCGGTGCTCACGTATCGCGTTTTTCCTTTCGGCTTTACAAG
TGAAACCATATTATTACAAATTTCATAACACCCAAACTTTTGTGTGCACC
CCGCCCTTTCATGCTGCCATAACTTGGGGCATCTCGACCTCTACTGGTTC
CAACTCTTTCTCTAGCCCTGCGCTGCCGAAGGTTGCCGAAAGCATCCTCA
CTTTGGCTACGTCGAGGGTGGTCCACGATACTGCGCGCAGCACCGCGCGG
AAGGGATGGTAGACGTCAAGCATAGGCGCTGCGCTGTAAAGAGCTGCCGC
AAGGACCGCGTCCTCATCCCTGGCAGTGCTATGAAGCGCGGAAAGTTCTG
CGAGGTCCACTGCAACGTCAACGAATTGATGGACAAAGAAGCTGCGTCGA
GCGACGGGACGTCAAGCGACAAGAAGCGAAGTCGTGTGTGGATGACGACA
ATGTGAGCAGGGTGATTGAGTCTTCTTGTTCAAGTTATTTCGGTCTTCAA
CTGTGTAAATCTCCAAATGATGGAAAAATATCCTAGAATCCGATCCAACA
GTCCACTCTTCGTTCTCGGTCCCGCTTGCATTGGCGCCAACTGTACAGCT
AACGGCAGTAGCACAAAAGTGGTCCGAGCACCGACCGAACAACCCCGCTT
TGCCGCGCGCCTGTGTTGTCTACTGCAGGGACGACGACAAGGAGTACATG
AGCTCAGAGAGCTCCCAGCGCGGCTCGTCGATGGGAGACGTAACGAGCAA
CATGTCCTACGACTACTCTTCCTCCAGGTCGGATGTTAGACCGAGCATCT
ACGACGCCGCACAGGGGTTGGCGCACCTCGCCATGCTCGCTTGCAGGGAG
CGTGCTCCTCCGTACGCTGGCCCGGAACCTGAATCTACCATGTCGCGAGG
GTATGGCCATGACCGCGACCACGCTCCTTGTCAACACACCGGACACCCCG
AGAACTTTCACCGCGATACGTCAAGAGCTGCTGCTGGCCGAGAACCTTCT
CTCCCTGAGTTTGGTAAGAGCGGTCCATCGCACCATACCAAGTCATCCAT
GGTATATAGAATAGGTAAACTTGTCGTTTCATGTCAGAAAGCTCGTTCGA
CGGATGACTTGATGTCTGGATACTGCTGTGCTGCAGGGAGCTTACCGATC
GACGGGGGATCGTGTTGCTTCCTCTCTACGTTTCAAGCGTTCTCTCTTAT
AGTATTACGCAAAACGGTGTATCGCCTAATGGCGGTTGTAAATGTTGAAG
TAGAAATCTGAGGGAACTAAGAACGATTTTCCAAGCGTCGTCGCTGACAC
CTCATGCAACCCCAACCCGCCCCCGCCCCACCCTCCACTCCGTGCTATGC
CAGACCACCGCGCCAAGTCTAACGGCACGAGAAACTTCTTCTATTCCGCC
GGAAGCTCCGGCCCCGAGCGCGATCCGTACCCGATGTTCAGCCGGGACTG
TCGGGACGGCCGGGACATGGGGCAGCCTGACGCTCCTTTCGAGGCTGAAA
GGCCTAGAGTGTCTCCAGACCTTCGCGATGGCGGCAGCTGCAGCAGCAAC
AGTGGCGGTACTGGCGCCCCCCCATCTGGGCCCGCTCCGCCGTTCCGCCT
CCGGTACTTCGAGCCGAAACCGAACTCGTCCGAGTATTCGGCCTATCCTT
GTCCGTGGGAGTACACCAGGGAGGGGCGGGGCGGACGCTGGGCCGAAGGG
GGCAGTACCCGTGGGTCTGTGCCGGCGAGCGGATGGAGTCACTCGTCCAC
CTCGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig165:156410..161066+

>mRNA_P-littoralis_Contig165.41.1 ID=mRNA_P-littoralis_Contig165.41.1|Name=mRNA_P-littoralis_Contig165.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1392bp|location=Sequence derived from alignment at P-littoralis_Contig165:156410..161066+ (Pylaiella littoralis U1_48)
ATGAAGAGAGGCAAGAGATGTTTCAACCAGAGCTGCTCGGCCGCGGCTCC
CTTCGCAAGTCCGTCGAATCCCGAGGTCCATGCCTGCGAGATCCATAAAA
AGAGGGACTTTGTCAACATGAGGAACAAGCGCTGCCTGGCGCCTGGGTGC
TACCGCAACCCGCACTACGGCGTGAGCAGACTCATTGATCCAAACAGCAA
GGCCCAGTACTGCACCAGGCACAAGTCACCCGGTATGCAGAATGTTAACG
GAGGGCGATGCGCGGGGCCAGACTGCTCCAAGCAGCCCCGCTTTTCTCTG
CCTGGAGAGAAGGGCAAGTACTGCTCCAAACACCGCGAAGAGGGGATGGT
CGACGTTCTCTACACGCCCTGCGCTGCCGAAGGTTGCCGAAAGCATCCTC
ACTTTGGCTACGTCGAGGGTGGTCCACGATACTGCGCGCAGCACCGCGCG
GAAGGGATGGTAGACGTCAAGCATAGGCGCTGCGCTGTAAAGAGCTGCCG
CAAGGACCGCGTCCTCATCCCTGGCAGTGCTATGAAGCGCGGAAAGTTCT
GCGAGGTCCACTGCAACGTCAACGAATTGATGGACAAAGAAGCTGCGTCG
AGCGACGGGACGTCAAGCGACAAGAAGCGAAGTCGTGTGTGGATGACGAC
AATGGACGACGACAAGGAGTACATGAGCTCAGAGAGCTCCCAGCGCGGCT
CGTCGATGGGAGACGTAACGAGCAACATGTCCTACGACTACTCTTCCTCC
AGGTCGGATGTTAGACCGAGCATCTACGACGCCGCACAGGGGTTGGCGCA
CCTCGCCATGCTCGCTTGCAGGGAGCGTGCTCCTCCGTACGCTGGCCCGG
AACCTGAATCTACCATGTCGCGAGGGTATGGCCATGACCGCGACCACGCT
CCTTGTCAACACACCGGACACCCCGAGAACTTTCACCGCGATACGTCAAG
AGCTGCTGCTGGCCGAGAACCTTCTCTCCCTGAGTTTGACCACCGCGCCA
AGTCTAACGGCACGAGAAACTTCTTCTATTCCGCCGGAAGCTCCGGCCCC
GAGCGCGATCCGTACCCGATGTTCAGCCGGGACTGTCGGGACGGCCGGGA
CATGGGGCAGCCTGACGCTCCTTTCGAGGCTGAAAGGCCTAGAGTGTCTC
CAGACCTTCGCGATGGCGGCAGCTGCAGCAGCAACAGTGGCGGTACTGGC
GCCCCCCCATCTGGGCCCGCTCCGCCGTTCCGCCTCCGGTACTTCGAGCC
GAAACCGAACTCGTCCGAGTATTCGGCCTATCCTTGTCCGTGGGAGTACA
CCAGGGAGGGGCGGGGCGGACGCTGGGCCGAAGGGGGCAGTACCCGTGGG
TCTGTGCCGGCGAGCGGATGGAGTCACTCGTCCACCTCGTGA
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