prot_P-littoralis_Contig165.24.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig165.24.2
Unique Nameprot_P-littoralis_Contig165.24.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length114
Homology
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: D7G5C0_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C0_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 2.120e-63
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0
Query:    1 MAAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKPKKPKA 113
            MAAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKK KKPKA
Sbjct:    1 MAAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA 113          
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: A0A835ZED0_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED0_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.720e-46
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKM 90
            AVGVPIKLLHEGEGH +T+EMKNGEIYRG L EAEDTMN F+T VTMT RDGRVSKLEQVYLRGSHIK ++LPD+LKNAPVFK VQKM
Sbjct:    6 AVGVPIKLLHEGEGHVITIEMKNGEIYRGRLMEAEDTMNSFITEVTMTARDGRVSKLEQVYLRGSHIKFIILPDLLKNAPVFKGVQKM 93          
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.530e-41
Identity = 63/89 (70.79%), Postives = 78/89 (87.64%), Query Frame = 0
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 92
            +GVPI++LHEGEGH ++VE++NGEIYRG L EAEDTMNCF+  VTMT RDGRVSKLEQVY+RGS +KL++LP+VLK++P F  VQ MKK
Sbjct:    6 IGVPIRILHEGEGHTISVELRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKK 94          
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: A0A6S9H3G1_HETAK (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H3G1_HETAK)

HSP 1 Score: 137 bits (344), Expect = 1.220e-39
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 0
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQ 88
            +GVP+KLLHE EGH VT E+KNGEIYRG L+EAEDTMNC M+ VT T R+G+VSKLE VY+RGSH+KL++LPD+L+NAPVFK VQ
Sbjct:    6 IGVPVKLLHEAEGHVVTAELKNGEIYRGMLDEAEDTMNCAMSNVTFTARNGKVSKLESVYIRGSHVKLLILPDMLRNAPVFKKVQ 90          
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: K3WSP0_GLOUD (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSP0_GLOUD)

HSP 1 Score: 135 bits (341), Expect = 3.710e-39
Identity = 61/89 (68.54%), Postives = 77/89 (86.52%), Query Frame = 0
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 92
            VGVPI LLHEGEG  VT+E+KNGEIYRGHL E+ED+MNC ++ V +T RDG+ +KLEQVY+RGSHIKL++LPD+LKN+P+F  VQ +KK
Sbjct:    5 VGVPIALLHEGEGRNVTIELKNGEIYRGHLEESEDSMNCQLSNVVLTQRDGQKAKLEQVYVRGSHIKLIILPDILKNSPLFSKVQALKK 93          
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: F0Y2Z6_AURAN (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Z6_AURAN)

HSP 1 Score: 133 bits (334), Expect = 4.180e-38
Identity = 63/95 (66.32%), Postives = 81/95 (85.26%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIK-----LVVLPDVLKNAPVFKPVQKMKK 92
            AVGVPIKLLHEGEGH VT+E+KNGEIYRGHL+E+E+TMNC +T V +T RDGRV+KLE VY+RGS IK      ++LPD+LK++PVF+ V+++KK
Sbjct:    7 AVGVPIKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLENVYIRGSQIKRERRAFMILPDLLKHSPVFEKVKELKK 101          
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: A0A1V9ZC26_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC26_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.930e-38
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKPKKPKA 113
            ++GVP+ LLHEGEGH +T+E+KNGEIY+GHL EAED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +KK             KKPKK K 
Sbjct:    4 SLGVPLSLLHEGEGHTITLELKNGEIYKGHLLEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKVQALKKPND----------KKPKKAKG 104          
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: A0A485LB96_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB96_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.900e-38
Identity = 58/89 (65.17%), Postives = 78/89 (87.64%), Query Frame = 0
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 92
            VGVP+ LLHEGEGH +T+E+KNGE+YRGHL E+ED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +KK
Sbjct:    5 VGVPLSLLHEGEGHQITLELKNGEVYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYVRGSQVKLFILPDMLQKSPLFKKVQALKK 93          
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: A0A5D6XZW3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZW3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 8.030e-38
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 92
            +VGVPI LLHEGEG  VTVE+KNGEIYRGHL E+ED+MNC M  V +T RDG+  KLEQVY+RGSHIKLV+LPDVLKN+P+   VQ +KK
Sbjct:    5 SVGVPIALLHEGEGRSVTVELKNGEIYRGHLLESEDSMNCQMRDVVLTQRDGQKRKLEQVYVRGSHIKLVILPDVLKNSPLLAKVQALKK 94          
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Match: T0QL39_SAPDV (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QL39_SAPDV)

HSP 1 Score: 132 bits (332), Expect = 8.420e-38
Identity = 57/90 (63.33%), Postives = 79/90 (87.78%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 92
            ++GVP+ LLHEGEGH +T+E+KNGEIY+GHL EAED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK +Q +KK
Sbjct:    4 SLGVPLSLLHEGEGHTITLELKNGEIYKGHLMEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKIQALKK 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.24.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C0_ECTSI2.120e-6399.12Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A835ZED0_9STRA5.720e-4684.09Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A7S2S181_9STRA5.530e-4170.79Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhiz... [more]
A0A6S9H3G1_HETAK1.220e-3972.94Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hete... [more]
K3WSP0_GLOUD3.710e-3968.54Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Glob... [more]
F0Y2Z6_AURAN4.180e-3866.32Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aure... [more]
A0A1V9ZC26_9STRA5.930e-3857.66Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Thra... [more]
A0A485LB96_9STRA6.900e-3865.17Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Apha... [more]
A0A5D6XZW3_9STRA8.030e-3871.11Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pyth... [more]
T0QL39_SAPDV8.420e-3863.33Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Sapr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 4.8E-14
score: 62.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..73
e-value: 7.8E-15
score: 54.3
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 1.7E-29
score: 103.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..113
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 1..104
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..104
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 7..76
e-value: 2.88442E-42
score: 131.489
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:83518..87187 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.24.2mRNA_P-littoralis_Contig165.24.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig165 82895..87472 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig165.24.2 ID=prot_P-littoralis_Contig165.24.2|Name=mRNA_P-littoralis_Contig165.24.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MAAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMT
GRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKKDEEAGGG
RGGGFKKPKKPKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034099SmD3
IPR010920LSM_dom_sf