mRNA_P-littoralis_Contig165.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig165.13.1
Unique NamemRNA_P-littoralis_Contig165.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: D7G5C4_ECTSI (Nascent polypeptide-associated complex subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C4_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 4.690e-91
Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 2 
Query:    5 MAARERMIARRFGGANATRTGGVRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGGEAGAADDDDDVPDLVENFEEASK 448
            MAARERMIARRFGGANATRTGGVRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGGEAGA DD+DDVPDLVENFEEASK
Sbjct:    1 MAARERMIARRFGGANATRTGGVRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGGEAGAGDDEDDVPDLVENFEEASK 148
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: A0A7S2GVT8_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVT8_9STRA)

HSP 1 Score: 200 bits (509), Expect = 4.140e-59
Identity = 107/158 (67.72%), Postives = 128/158 (81.01%), Query Frame = 2 
Query:    8 AARERMIARRFGGANATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGGEAG--------AADDDDDVPDLVENFEEASK 448
            AAR RMI++RFG  + +RTGG   VRRKKK VHKTATSDDKKL +TLK++GVTNIPAIEEVN+F NDG+V+HF  PKVQAS+ ANTYVVSG +ETK L D+LPGIIN+LGQ+NL+ +K+IA N  GG AG        A+DDDDDVPDLVENFE+ S+
Sbjct:   27 AARRRMISKRFGNQSQSRTGGKGTVRRKKKAVHKTATSDDKKLGSTLKKLGVTNIPAIEEVNLFTNDGKVVHFSNPKVQASIAANTYVVSGPNETKALTDMLPGIINQLGQDNLEHIKQIAENMQGGAAGPTDPIDAEASDDDDDVPDLVENFEDISQ 184
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: A0A8J2WZC4_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZC4_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.830e-56
Identity = 102/158 (64.56%), Postives = 123/158 (77.85%), Query Frame = 2 
Query:    2 IMAARERMIARRFGGANATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGGEAGAA------DDDDDVPDLVENFEEASK 448
            + AARE+MIARRFGGA  +RTGG    RRKKK VHKTATSDDKKL +TLK++GVTNIPAIEEVN+F +DG+VIHF  PKVQAS+ ANTYV+SG +E KKL DLLPGI+N+LG +N+D LK++A N        +      D D+DVPDLVENFE+ SK
Sbjct:    3 VAAAREKMIARRFGGAQQSRTGGKGSFRRKKKTVHKTATSDDKKLGSTLKKLGVTNIPAIEEVNLFTSDGKVIHFSNPKVQASIAANTYVISGPNEAKKLSDLLPGIMNQLGPDNIDHLKQLADNLSNSNKSTSMGEEHDDGDEDVPDLVENFEDVSK 160
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: F0YK21_AURAN (Nascent polypeptide-associated complex subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK21_AURAN)

HSP 1 Score: 182 bits (461), Expect = 2.080e-52
Identity = 98/152 (64.47%), Postives = 120/152 (78.95%), Query Frame = 2 
Query:   23 MIARRFGGANATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFP----GGEAGAADD---DDDVPDLVENFEEASK 448
            MIARRFGGA  +RTGG   VRRKKK +HKTATSDDKKL +TLK++GVTNIPAIEEVN+F +DG+V+HF  PKVQAS+ ANTYVVSG +ETK+L +LLPGI+N+LG +N+D LK+IA           A + DD   DD+VPDL+ENFE+ SK
Sbjct:    1 MIARRFGGAQQSRTGGKGSVRRKKKTMHKTATSDDKKLGSTLKKLGVTNIPAIEEVNLFTSDGKVVHFSNPKVQASIAANTYVVSGPNETKQLTELLPGIMNQLGPDNIDHLKQIADKMSYSNRAPSASSKDDEIDDDEVPDLIENFEDVSK 152
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: F0YGQ0_AURAN (Nascent polypeptide-associated complex subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGQ0_AURAN)

HSP 1 Score: 182 bits (462), Expect = 2.380e-52
Identity = 102/165 (61.82%), Postives = 126/165 (76.36%), Query Frame = 2 
Query:    2 IMAARERMIARRFGGANATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGGE----------AGAADDDD---DVPDLVENFEEASK 448
            ++AARE+MIARRFGGA  +RTGG   +RRKKK VHKTATSDDKKL +TLK++GVTNIPAIEEVN+F  DG+V+HF  PKVQAS+ ANTYVVSG +E+K+L +LLPGI+N+LG +N++ LK+IA +   G           AGA   D    DVPDLVENFE+ SK
Sbjct:    3 VVAAREKMIARRFGGAQQSRTGGKGSIRRKKKTVHKTATSDDKKLGSTLKKLGVTNIPAIEEVNLFTADGKVVHFSNPKVQASIAANTYVVSGPNESKQLTELLPGIMNQLGPDNINHLKQIADSMSLGSGNAQESAAVGAGAVGIDXXXXDVPDLVENFEDVSK 167
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: A0A6V1P391_HETAK (Nascent polypeptide-associated complex subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P391_HETAK)

HSP 1 Score: 182 bits (461), Expect = 3.050e-52
Identity = 100/154 (64.94%), Postives = 118/154 (76.62%), Query Frame = 2 
Query:   11 ARERMIARRFGGANATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGGEAGAADDDDD-----VPDLVENFEEASK 448
            AR +MIARRFGG   TRTGG   +RRKKK VHKTATSDDKKL TTLK++GVTNIPAIEEVN+FK +GEVIHFV PKVQAS+ ANTYV+SG  +TK+LQDLLPGIIN+LG ++L  LK+IA ++                  VPDLVENFE+A+K
Sbjct:    9 ARAKMIARRFGGQTTTRTGGKGSMRRKKKTVHKTATSDDKKLGTTLKKLGVTNIPAIEEVNLFKQNGEVIHFVNPKVQASIAANTYVISGDPQTKQLQDLLPGIINQLGPDSLANLKQIAESYSNAAGXXXXXXXXXXXXXVPDLVENFEDAAK 162
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: A0A7S2XW83_9STRA (Nascent polypeptide-associated complex subunit beta n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW83_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.190e-49
Identity = 102/160 (63.75%), Postives = 118/160 (73.75%), Query Frame = 2 
Query:    2 IMAARERMIARRFGGANATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPG--GEAGAADDDDDVPD-------LVENFEEAS 445
            + AAR++MIARRFGG   +RTGG   VRRKKK VHKTATSDDKKL TTLK++GVTNIPAIEEVN+FK +GEVIHF  PKVQAS+ ANTYV+SG SETK+LQ+LLPGIIN+LG +NL  LK+IA  +    G AG                 LVENFEE S
Sbjct:    7 VQAARQKMIARRFGGEQHSRTGGKGSVRRKKKAVHKTATSDDKKLGTTLKKLGVTNIPAIEEVNLFKENGEVIHFSNPKVQASINANTYVISGMSETKQLQELLPGIINQLGPDNLANLKQIAEAYANTSGAAGXXXXXXXXXXXXXXXXXLVENFEEVS 166
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: A0A7S2WUD9_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUD9_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.300e-48
Identity = 94/151 (62.25%), Postives = 121/151 (80.13%), Query Frame = 2 
Query:   11 ARERMIARRFGGANATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKE--IAGNFPGGEAGAAD--DDDDVPDLVENFEEA 442
            AR+RMIA+RFGG    RTGG   +RRKKK VHKTA+SDDKKL+TTLK++GVTNIPAIEEVN+F N G VIHF  PKVQAS+GANTYVVSG +ETK + ++LP I+++LG E+++Q+K+   A    GG A +AD  +D++VP+LV +FEEA
Sbjct:   31 ARQRMIAKRFGGQTQARTGGKGSIRRKKKAVHKTASSDDKKLSTTLKKLGVTNIPAIEEVNLFTNGGNVIHFQNPKVQASIGANTYVVSGPNETKTVAEMLPSIMSQLGSESVEQMKQQYAAAMGAGGPAASADAEEDEEVPELVGSFEEA 181
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: A0A7S2IFA1_9EUKA (Nascent polypeptide-associated complex subunit beta n=2 Tax=Haptolina TaxID=1090112 RepID=A0A7S2IFA1_9EUKA)

HSP 1 Score: 172 bits (436), Expect = 1.770e-48
Identity = 93/140 (66.43%), Postives = 110/140 (78.57%), Query Frame = 2 
Query:   47 ANATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGGEA----GAADDDDDVPDLVENFEEAS 445
            A   RTGG   VRRKKK +HKT T+DDK+L  TLKR+GV NIPAIEEVN+FK++G VIHF  PKVQAS+ ANTYVVSG +ETKKLQDLLPGIIN+LG +NL  LK++A  +  G A      ADDD+DVPDLV+NFEEA+
Sbjct:   28 AAQVRTGGKGSVRRKKKAIHKTTTTDDKRLQNTLKRLGVNNIPAIEEVNLFKDNGTVIHFNNPKVQASIAANTYVVSGHAETKKLQDLLPGIINQLGPDNLANLKKLAETYQSGGAPPPTAGADDDEDVPDLVDNFEEAA 167
[Close]
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Match: R1DCP8_EMIHU (Nascent polypeptide-associated complex subunit beta n=3 Tax=Eukaryota TaxID=2759 RepID=R1DCP8_EMIHU)

HSP 1 Score: 171 bits (432), Expect = 4.040e-48
Identity = 92/141 (65.25%), Postives = 111/141 (78.72%), Query Frame = 2 
Query:   47 ANATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGG-----EAGAADDDDDVPDLVENFEEAS 445
            A   RTGG   VRRKKK VHKT T+DDK+L  TLKR+GV NIPAIEEVN+FK++G V+HF  PKVQAS+ ANTYVVSGQ+ETKKLQ+LLPGIIN+LG +NL  LK+IA ++  G       G A+DD+DVPDLV+NFEE +
Sbjct:   10 AAQVRTGGKGSVRRKKKAVHKTTTTDDKRLQNTLKRLGVNNIPAIEEVNLFKDNGTVVHFNNPKVQASIAANTYVVSGQAETKKLQELLPGIINQLGPDNLANLKKIAESYQAGGPGQIPTGDAEDDEDVPDLVDNFEETA 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C4_ECTSI4.690e-9198.65Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2GVT8_9STRA4.140e-5967.72Nascent polypeptide-associated complex subunit bet... [more]
A0A8J2WZC4_9STRA1.830e-5664.56Nascent polypeptide-associated complex subunit bet... [more]
F0YK21_AURAN2.080e-5264.47Nascent polypeptide-associated complex subunit bet... [more]
F0YGQ0_AURAN2.380e-5261.82Nascent polypeptide-associated complex subunit bet... [more]
A0A6V1P391_HETAK3.050e-5264.94Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2XW83_9STRA1.190e-4963.75Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2WUD9_9STRA1.300e-4862.25Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2IFA1_9EUKA1.770e-4866.43Nascent polypeptide-associated complex subunit bet... [more]
R1DCP8_EMIHU4.040e-4865.25Nascent polypeptide-associated complex subunit bet... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:66503..70620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5C4
Preferred nameBTF3L4
PFAMsNAC
Model size1301
Max annot lvl2759|Eukaryota
KEGG koko:K01527
KEGG Pathwayko04214,map04214
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0000578,GO:0001700,GO:0001701,GO:0003002,GO:0003006,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0005844,GO:0005854,GO:0006139,GO:0006351,GO:0006366,GO:0006403,GO:0006457,GO:0006458,GO:0006605,GO:0006612,GO:0006613,GO:0006620,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007317,GO:0007318,GO:0007350,GO:0007351,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0008358,GO:0008565,GO:0008595,GO:0009056,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010467,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0016070,GO:0016236,GO:0018130,GO:0019438,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030014,GO:0030015,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035282,GO:0042788,GO:0042886,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043900,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045047,GO:0045184,GO:0045595,GO:0045995,GO:0046483,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051082,GO:0051083,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051704,GO:0060281,GO:0060284,GO:0060341,GO:0060548,GO:0060810,GO:0060811,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902875,GO:1903429,GO:1904580,GO:1905879,GO:1990904,GO:2000026,GO:2000241
Exons4
Evalue1.08e-95
EggNOG OGsKOG2240@1|root,KOG2240@2759|Eukaryota
Descriptionprotein transport
Cds size447
COG categoryK
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.13.1prot_P-littoralis_Contig165.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig165 66507..69770 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789794.9967544-UTR-P-littoralis_Contig165:66502..665061680789794.9967544-UTR-P-littoralis_Contig165:66502..66506Pylaiella littoralis U1_48UTRP-littoralis_Contig165 66503..66506 +
1680789795.0464554-UTR-P-littoralis_Contig165:69770..706201680789795.0464554-UTR-P-littoralis_Contig165:69770..70620Pylaiella littoralis U1_48UTRP-littoralis_Contig165 69771..70620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789795.0088656-CDS-P-littoralis_Contig165:66506..666151680789795.0088656-CDS-P-littoralis_Contig165:66506..66615Pylaiella littoralis U1_48CDSP-littoralis_Contig165 66507..66615 +
1680789795.0199034-CDS-P-littoralis_Contig165:68254..683711680789795.0199034-CDS-P-littoralis_Contig165:68254..68371Pylaiella littoralis U1_48CDSP-littoralis_Contig165 68255..68371 +
1680789795.028882-CDS-P-littoralis_Contig165:69072..691291680789795.028882-CDS-P-littoralis_Contig165:69072..69129Pylaiella littoralis U1_48CDSP-littoralis_Contig165 69073..69129 +
1680789795.0377758-CDS-P-littoralis_Contig165:69606..697701680789795.0377758-CDS-P-littoralis_Contig165:69606..69770Pylaiella littoralis U1_48CDSP-littoralis_Contig165 69607..69770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig165.13.1

>prot_P-littoralis_Contig165.13.1 ID=prot_P-littoralis_Contig165.13.1|Name=mRNA_P-littoralis_Contig165.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MAARERMIARRFGGANATRTGGVRRKKKNVHKTATSDDKKLTTTLKRIGV
TNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLL
PGIINELGQENLDQLKEIAGNFPGGEAGAADDDDDVPDLVENFEEASK*
back to top

mRNA from alignment at P-littoralis_Contig165:66503..70620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig165.13.1 ID=mRNA_P-littoralis_Contig165.13.1|Name=mRNA_P-littoralis_Contig165.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4118bp|location=Sequence derived from alignment at P-littoralis_Contig165:66503..70620+ (Pylaiella littoralis U1_48)
CATCATGGCTGCGCGAGAGCGCATGATCGCTCGGCGGTTTGGAGGGGCGA
ACGCGACCCGGACAGGAGGAGTACGGAGGAAAAAGAAAAACGTCCACAAG
ACCGCCACCTCTGGTGTGTTGTTCGAACTAGTGCTCCGAATTCCTGATCA
TGTGTTTTCCATCTCGCGTATGTACAATGTTAATCCTTTAGAGTGCATAG
TGTAGAGTTTATGAGTGCCCTGGGCAAATAAAAAATGTGTTGCCCTGCTT
GTCGCCACTTGGAGTAGGTAATTATATACTCGGTCATATTATCCCACCGT
GTCATCCGAGCGAACCGGGGTTTGTGTACTGCTAAATCATAACTTCTAAT
TCCCCCATCTGACATCTGAAATGTTGACCATTTAAAAAACGTCGACCACC
GGGAACGTGCCTACAGCGTAGTACGTCGGAGAGGGTGCCGCAGGGATTAT
CTTGCTGAGGTATTGTAACAGAGTTGATACCGTACCCGATGTTGGCACAC
ACCCTCCCCGTTTTCAAGATACCGCCTGTAGCAGCCGAGGGAATTACAGC
AGAAATTCGCTCCCGGCTACGGTACACCGAGCTTTGGAGACGCCCTTGAT
CAGGCATGATACATCGCCTGATCCTCTCTCCCTTTCAATCATGCTTGTAT
ACACATACTCATGTCCTTCGAAGTACAGTCGTAGCTTTCAACCCCGCCTA
TCTTGTTTGATGTTGGCTTTTCGCCAGCGCAACACAAGCTGAGAAATCTA
GGCGTTTCTCGTTTGTTGAGCCGGTAAGCCGTCGGCTCCTTCTTACACAC
TCACCGATCATACCTCACTACCACAGTGAAATGCTGCACTGCCGTACGGT
CGGCCATTCCTTCTGTTGCAACGGCCAGTTTACTACGAGTACAGTGTCAG
GTCGTCTCGGATGCATGCGCACACGAAGTCGCCGATATGCCTGTCTGTTG
CAAACGACGGTGACGCCAACCGTATGCCACACGCGGTGTTTCGTCCGCCC
GTGTTCCTTGCGTCGATGAGTTCAGACTCGCTCTGAAACGTTCATGTGTG
TGGTAGTCCTTCTGTGTCAAAATACCGCAGGTTTGCTGCTGTGTTCAAAC
TAACCGGCGAACCACCAGCGATGTTAATGAATGTTTATCGCATCAAGAAA
AACCTTGTAGTTGGATGGAAATGGATTGTGGTAAAAATAGTTTAAATTTA
TCTTCATATTTAATATTGATTTGTTATTTTGACGTACCAAACATCAATTT
TAGTAACCAGTGCAGCAATATGCCGACTCACCTCGGGTCTAGAAACCCGC
TTGGGACGCATGTACTGTATGATAGTGCAGAGATGCTTTGTGGTCTTGGT
GCGAAAACCTCGTGTCGTTGATGCCTACTGTATGTGATGTGGGTGTTGCA
ATCGCCTGTTCCGTTCCTGCCGGAAAAGTTTCCTCATCTTGAGGGGGTTC
CGCGCTCGTCTGCCCTGCCAAGTACTCAAACGCTCTGCATGCTTCGTGCA
CATAAGAATATTACTTTCCAAAGATAATGCTTTCACAAGCCAGCGACATG
ATCGCAATGCGCACAGAGCTTGATCTTTAGTCAGAAGAAGTAAGCGCAGC
GTAGGTTTCACCAACAGACGTGCAACTCCCTCTCGATGACATTCCATGTC
TTCGTCTTTTTCCAAATCACGTTTCTTCACTCGTAAATACTCAGTACTCG
TATATCCGTGTTATGGCGGACGTTGTACTGAATGAAAACGGCGCGTTTTC
AGATGACAAGAAACTTACGACGACCCTTAAGCGGATTGGCGTAACGAACA
TCCCTGCCATCGAGGAGGTCAACATGTTCAAGAACGACGGCGAGGTGATC
CACTTCGTCGGGCCAAAGGGTGAGAAAATGATTATCTGAAAAGGAGGCAT
GAACGCAGGGAACAAAAACGGTACCTGGTATTTGATTTGTTCCCTCTCTC
TGTGGGTGTGTTGCCGTCCGGCGATACGTGAACCACCTGTTATTATTGAT
TCGCACTCCCTGTTCGTGACTACAGCACGGACATGTCAGGCAGACGTGTG
CAATGCTGTACAACAGCAGGGTTCTTCTTTTCTTGTACATGATATTCGCG
GTGTAGATGTTGATTTCCGAGAGCATCTTACTGCTCGTGCCAACATGAAG
TGACGACACTACACTCCACGTGCGTCGTTTGTGTGTTTCCACTTCAGGGT
GCGTTGTTTTGTGTTCGTATAGTGGTAGCGAGGAAGGTCTCGTGACACGT
TGGTCTTGACCACGAACAGAGGAAAGCAATCGAGCAGGCAGGCCAATTCT
CATCCTCTTTTGCTTCTAATCGGCGATGGGAGACCAAGCACCACATCCAA
CTGTTCCACGTACGATCATATCAAACATCGTCCTTAACAAACATATGATA
CCGGTACCTAATTTGGACTGTGTTGTGTCGCCGAGGTTTCGTAGTTTATC
ACAGATTAGCCTTTGAAGGGTCTACGTTAGTTCTTCTGGAGAAAAAAAAT
GACGCTGCATTTTCTCCGCCCTTGTGCGCGCCGCCGCTGTCCTTCGAACT
GTTTTTTATTATTCTTGCAGTCCAAGCATCCGTTGGCGCTAACACGTACG
TCGTCAGCGGCCAGTCGGAGACCAAAAGTGAGTGTACCATCCTTCTCGAT
GAGGAAATGTCAATACCAAGCATTTTCTATGAGAGTGCCAGACTTTTTAT
TTGTCTCCTTGTCTTGGCTGAACAAATCGACCACCGTTCAGGAACACGTG
AAGCGTAGCTAATCTTCGGTCAGAGACCGTTTCGCCTCTGATCCCTTTAC
AATCTACACCTGTCAAGGTCTATGTATCGTGCTGCTTCCCAAGGCGGGCT
AAAAAACAAGTGTTACACAAACGTTATTTGATAAATGCTTTGATGCAGGG
TGGCATTCTTCCACGTCATGTTGGCGTGGTCCTCACGGCAGCAGCACATG
CGCTAAGGCGGCACGCTACGCAGTCAGCCCCTTCCATCGTTCTTCGGCTC
CCGTCTCTAAAAACCGTACACATGGCATTACACCTGACTGTCGCTGCTGT
TTCCTGTTCTCGAATTTGCTTTCTGGACGTTTCCGAATTGCTACCGCGCA
ACAGAGTTGCAGGACCTGCTCCCGGGCATCATCAACGAGCTAGGACAGGA
GAACCTGGACCAGCTGAAGGAGATCGCGGGCAACTTCCCTGGGGGCGAAG
CGGGCGCGGCTGATGACGACGACGATGTGCCCGACCTCGTAGAAAACTTC
GAGGAGGCCTCCAAGTAATTCCTACCGACCCTCTGTAGCTAGCTTGTCGT
GACCCGTGGGATCAGGTCGAGGGGGTGGGGGGAAGGGGCGGGGGACTTCG
GCGAGGATTGTCGGACCAGGTAGCCTTTCGTGACGGCACGCCATCTCTCA
TTCTTGAGTGTTCTATTCGTGTTAGTTCTTGCATCCCATTGTTGGTTTGC
TGCTCGATATGTAGCGCAGTACTTTGTTGTTGAGACTGCAACATGTCGCA
GACTATCGTTGTCGGGAGCTGTTTATGAAAGTTTTGGTTTTGTCTTGTCT
TGCTTCTCTGGTAGCCGATGATCACTCAAGCATACGGGTGGTTACATCAC
TGAATCCACAACCTCCTTGATTCTCGAGTTCTCAAGTTTTTTCAGCTCCA
TCCCCCCCCCCCCTTCTCCTATCAACGTTTGTCGTGTTCCTGTATCTTCA
CTAGTACAGCACCTATGCGGAGTACCTCTGGAGAAGGACTTATTTTACCT
CGTGTTGCGAACGTGCGAATATATATTTAATTTTGATTCGTTCCCCTTGA
GGGTGTTGGATGTTTCGACACGAGGAGAGAGAACGAGCAGCTCGAAGCGC
ACATTGTCCGAGATAGTGTCGCATGATCTGCAGAAAAGTGGTCTTTCTCC
AACATCGTACAAAGGTAGTTCGGTCGATGACGGGCCTCACCCTCCCTTTA
AGCAGTCAGTTCTGGGTACAGTCGTGCGGCTTCACCCACACGCACGACAC
GTTGCCTCAAGTACGAGAAGGGCATATTTCACGATCAGCGCAAGGCCCTG
TATTAACACTGTTCAGGAAATCAAAATTGGAAAGAATCAAAATCAAAATT
GGGATCTGATTGGTCGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig165:66503..70620+

>mRNA_P-littoralis_Contig165.13.1 ID=mRNA_P-littoralis_Contig165.13.1|Name=mRNA_P-littoralis_Contig165.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig165:66503..70620+ (Pylaiella littoralis U1_48)
ATGGCTGCGCGAGAGCGCATGATCGCTCGGCGGTTTGGAGGGGCGAACGC
GACCCGGACAGGAGGAGTACGGAGGAAAAAGAAAAACGTCCACAAGACCG
CCACCTCTGATGACAAGAAACTTACGACGACCCTTAAGCGGATTGGCGTA
ACGAACATCCCTGCCATCGAGGAGGTCAACATGTTCAAGAACGACGGCGA
GGTGATCCACTTCGTCGGGCCAAAGGTCCAAGCATCCGTTGGCGCTAACA
CGTACGTCGTCAGCGGCCAGTCGGAGACCAAAAAGTTGCAGGACCTGCTC
CCGGGCATCATCAACGAGCTAGGACAGGAGAACCTGGACCAGCTGAAGGA
GATCGCGGGCAACTTCCCTGGGGGCGAAGCGGGCGCGGCTGATGACGACG
ACGATGTGCCCGACCTCGTAGAAAACTTCGAGGAGGCCTCCAAGTAA
back to top