mRNA_P-littoralis_Contig165.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig165.51.1
Unique NamemRNA_P-littoralis_Contig165.51.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:204722..205231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size510
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789794.2188957-UTR-P-littoralis_Contig165:204721..2047821680789794.2188957-UTR-P-littoralis_Contig165:204721..204782Pylaiella littoralis U1_48UTRP-littoralis_Contig165 204722..204782 -
1680789794.2430046-UTR-P-littoralis_Contig165:205154..2052311680789794.2430046-UTR-P-littoralis_Contig165:205154..205231Pylaiella littoralis U1_48UTRP-littoralis_Contig165 205155..205231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789794.2319953-CDS-P-littoralis_Contig165:204782..2051541680789794.2319953-CDS-P-littoralis_Contig165:204782..205154Pylaiella littoralis U1_48CDSP-littoralis_Contig165 204783..205154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.51.1prot_P-littoralis_Contig165.51.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig165 204783..205154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig165.51.1

>prot_P-littoralis_Contig165.51.1 ID=prot_P-littoralis_Contig165.51.1|Name=mRNA_P-littoralis_Contig165.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MIVWVTPGKVQTAVPAMPTCSLRLKSLWDFDAIGFDLSQVTVYLAMVSSE
SFVLRVDGVAGNGYHCRKAKQNAFAKEARVLLRELVRCGDPCPSIHITSV
IGRTTRTMLLYLVPRRIVLLTLF*
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mRNA from alignment at P-littoralis_Contig165:204722..205231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig165.51.1 ID=mRNA_P-littoralis_Contig165.51.1|Name=mRNA_P-littoralis_Contig165.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig165:204722..205231- (Pylaiella littoralis U1_48)
CGGCGGACGAAGCTGCGCAAGAAGCTACTTCGGAGGCGGCCGCACGGCGG
GAGGCTCAGATCGAGCAGCTGCAGGTCATGATAGTTTGGGTGACCCCTGG
AAAAGTGCAGACGGCAGTACCGGCAATGCCAACGTGTTCGTTGCGTTTGA
AGTCATTATGGGATTTTGATGCGATCGGCTTTGATCTGTCTCAAGTTACC
GTTTATCTGGCCATGGTTTCTTCGGAGTCGTTCGTGCTTCGTGTCGATGG
CGTGGCAGGGAATGGGTATCATTGCCGCAAAGCTAAACAAAATGCCTTCG
CAAAGGAGGCCCGGGTTCTGCTTCGTGAGCTCGTGCGTTGCGGAGATCCT
TGCCCGTCCATTCACATAACTTCTGTGATTGGTAGAACCACACGTACCAT
GTTACTGTATCTAGTACCACGGAGGATCGTTTTGTTGACGTTGTTCTGAT
GTTCGCAACCATTACCGTCAATCGATCACGGACATTCCGAAGGCGGCTCT
GGAAGAGGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig165:204722..205231-

>mRNA_P-littoralis_Contig165.51.1 ID=mRNA_P-littoralis_Contig165.51.1|Name=mRNA_P-littoralis_Contig165.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig165:204722..205231- (Pylaiella littoralis U1_48)
ATGATAGTTTGGGTGACCCCTGGAAAAGTGCAGACGGCAGTACCGGCAAT
GCCAACGTGTTCGTTGCGTTTGAAGTCATTATGGGATTTTGATGCGATCG
GCTTTGATCTGTCTCAAGTTACCGTTTATCTGGCCATGGTTTCTTCGGAG
TCGTTCGTGCTTCGTGTCGATGGCGTGGCAGGGAATGGGTATCATTGCCG
CAAAGCTAAACAAAATGCCTTCGCAAAGGAGGCCCGGGTTCTGCTTCGTG
AGCTCGTGCGTTGCGGAGATCCTTGCCCGTCCATTCACATAACTTCTGTG
ATTGGTAGAACCACACGTACCATGTTACTGTATCTAGTACCACGGAGGAT
CGTTTTGTTGACGTTGTTCTGA
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