mRNA_P-littoralis_Contig165.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig165.107.1
Unique NamemRNA_P-littoralis_Contig165.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:473132..473896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size178
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789794.1768816-CDS-P-littoralis_Contig165:473131..4732101680789794.1768816-CDS-P-littoralis_Contig165:473131..473210Pylaiella littoralis U1_48CDSP-littoralis_Contig165 473132..473210 +
1680789794.1863291-CDS-P-littoralis_Contig165:473798..4738961680789794.1863291-CDS-P-littoralis_Contig165:473798..473896Pylaiella littoralis U1_48CDSP-littoralis_Contig165 473799..473896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.107.1prot_P-littoralis_Contig165.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig165 473132..473896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig165.107.1

>prot_P-littoralis_Contig165.107.1 ID=prot_P-littoralis_Contig165.107.1|Name=mRNA_P-littoralis_Contig165.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
WNKSCKLPIPTWLTPKLMGQSTLTDQTNRLYTVDGAIWSKYSEAGKIIKR
DFNLLWDR*
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mRNA from alignment at P-littoralis_Contig165:473132..473896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig165.107.1 ID=mRNA_P-littoralis_Contig165.107.1|Name=mRNA_P-littoralis_Contig165.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig165:473132..473896+ (Pylaiella littoralis U1_48)
TGGAATAAGTCCTGCAAGCTGCCGATTCCTACGTGGCTGACGCCGAAGCT
CATGGGCCAGAGCACGCTGACTGACCAAAGTGAGATGCGGAAAGATTTGT
AGGGTGGAGCACCTGCAGCAGCAGCTGCTGCAGCGGCAGCAGTAACAGCA
GTACCGGTACCAGTGTTTGCGTGCCACAAACTCTCAAGCAGGCTCACACC
AGCTATTTTTCGCCTCTGTGCTGTTTCAGCCTTCGATTGCGAGTTCATCT
GCTGGCACATCCAATAGGGTTTGCTGCACACATCATATCTTGGAATAACT
TTGTCGAGAAAGAAAAAGAAACAACAGCAGTACTGCTGTACAGTATCTGA
TACGTATAATTTGCTCGTTCCCGAGGACAGCAGCACAACAGCAGCAGTAT
ATACAAGACCACGCCTCTGCATCACGAACGACGCACATCCGACGAACCGT
GTGCGTTGTGCGGCAACACTCGTCTACCTGATTTATTATTAATTATTTAC
ATAGTTTTTTGTTTGTATTGCTGCCCAGTGCTTTGGCTTGTTCATAGCTT
GAAGCCCTTTGCCGAGGGAGACGCTCGAAACCATCCCGACATATCAGTGC
TTGACGAATAGCCCTCCACCCCGTTGGCCTCCTCGTTGCGTCCCGTCACG
TTGTTGCCTCCGTGCAGCTAACAGGCTGTACACAGTTGATGGTGCTATCT
GGAGCAAGTACTCGGAAGCTGGCAAAATTATTAAGAGGGACTTCAACCTC
CTCTGGGACAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig165:473132..473896+

>mRNA_P-littoralis_Contig165.107.1 ID=mRNA_P-littoralis_Contig165.107.1|Name=mRNA_P-littoralis_Contig165.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig165:473132..473896+ (Pylaiella littoralis U1_48)
TGGAATAAGTCCTGCAAGCTGCCGATTCCTACGTGGCTGACGCCGAAGCT
CATGGGCCAGAGCACGCTGACTGACCAAACTAACAGGCTGTACACAGTTG
ATGGTGCTATCTGGAGCAAGTACTCGGAAGCTGGCAAAATTATTAAGAGG
GACTTCAACCTCCTCTGGGACAGGTGA
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