mRNA_P-littoralis_Contig164.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.96.1
Unique NamemRNA_P-littoralis_Contig164.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 4.840e-75
Identity = 143/337 (42.43%), Postives = 196/337 (58.16%), Query Frame = 1 
Query:  490 TFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHP--DGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHV 1494
            T F+ MFP   + L V +TN Y   CTT       D R+     K  T G  + P+       +Y ++GI +T+GL +   +  HW  S + D+ LVR+ M+RD+F L+Y RF H +   +P R    D + +  +D+ WHIR  E +LN  W+      QW+ +DEQMV  V   A +++R+ PKKPI +G+KL+A+    GYCF S  DGG  GDPKLR W DCPLGRT R VL VL GAC    +++  SG Y+AMDN+F SP LF CL  H +FAVGT +    G   AV Y  +  + P ++G+M FAR G + F QW DSK + L S+IH+
Sbjct:  638 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHI 972
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 3.690e-67
Identity = 160/447 (35.79%), Postives = 215/447 (48.10%), Query Frame = 1 
Query:  319 DRGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDP--SKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKR--------------------HP----------------------DGSYDEGW-----------DALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHV 1494
            DRG         HKK T     S   S S    ++ PS D     L       L  L  T F+ MFP   V L V +TN Y   CTT P     D R+     K  T G  + P+       +Y ++GI +T+GL     +  HW  S + D+ LVR+ M+RD+F L+YSRF H +   +P R                    +P                      DG+    W           D+ WHIR  E +LN  W+      +W+ +DEQM+  V   A +++R  PK+PI +G+KL+A+    GYCF S  DGG  GDPKLR W DCPLGRT R VL VL GAC    +++  SG ++AM N F+SP LF CL  H +FAVGT +    G   AV Y  +  + P ++G+M FAR G + F QW DSK + L S+IH+
Sbjct:  475 DRGIPDFAGTDDHKKRTQRETVSAA-SLSASAREKLPSLDTFMDNLDESGKFPLHGLMMTCFDMMFPDEAVDLFVDKTNKYVNLCTTPPLPGAKDTRKAHQVKKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGXMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHI 918
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5KVX6_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX6_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.110e-61
Identity = 128/327 (39.14%), Postives = 177/327 (54.13%), Query Frame = 1 
Query:  508 FPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPD--------GGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFSSPVLFNCLLWHGLFAVGTLK-DIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKD 1458
            FP     L + +TN Y   CTT P   E+DKR+     K  T GR +  +        G      M  +IGI +T+GL +   +  HW  S + ++ LV++SM RD+F L+Y RF H +   +PKR  P G  +  +D+    +  E MLN  W+       W+S+DEQM+  V + +  +  Y P KPIK+G+KL A    +GYC  S  DGG  GDPKLR + DCPL RT R VL VL G C  L +++  SG ++AMDN+F+SP L  CL  H +FAVGT + D+  GA     Y  +  +T   +GDM F R G +   QW D
Sbjct:   65 FPQKARKLFLDKTNAYVKHCTTAPPPGEEDKRKPHQMKKSATLGRVTLGERSEERNTYGMFEEQHMDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKSMPRDVFELLYCRFLHCSDPNAPKRLLPAGEENPDYDS----KELEEMLNTAWATNVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLDRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLLECLASHDIFAVGTCRADLTAGADT---YLESLGRTIPNRGDMNFCRSGQVACVQWAD 384
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.760e-59
Identity = 111/278 (39.93%), Postives = 147/278 (52.88%), Query Frame = 1 
Query:  661 GITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHV 1494
            G     +Y+V G              +H  V  + ++ +VR  M RD+F+L Y RFFH+APA       D  YD       HIR  E +LN+ WS     G W+S+DEQMV    R    ++RY   KPIK+G+K WA+ C SGY F    DGGF GD KLR +A CPLGR+ R V++VL  AC   + +++  G  VAMDNFF+   L  CL    +FAVGTL+    G   A+  W        ++G M  AR   L   +W DS+ V L+ST HV
Sbjct:   28 GFERKHLYSVTGXXXXXXXXXXXXXXDHCGVEAHDNYPMVRACMPRDLFVLFYGRFFHLAPATGKLNKDDPKYD----CKHHIRKLEDVLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLGCLATRDIFAVGTLRGNRIGVELAIYLWAKEGMAATERGQMLTARSDELVIVKWIDSQEVYLMSTKHV 301
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.180e-56
Identity = 111/270 (41.11%), Postives = 156/270 (57.78%), Query Frame = 1 
Query:  688 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHV 1494
            +IGI +T+GL +   +  HW  S + ++ LV++ M+RD+F L+Y RF H +   +P+R  PDG  +  +D+  HIR  E +LN  W+     G W+S+DEQM+  V +              + G+KL A    +GYC  S  DGG  GDPKLR + DCPLGRT R VL VL G C  L +++  SG ++AMDN+F+SP LF CL  H +FAVGT +      + A  Y  +  +T   +GDM F R G +   QW DS  + L+STIHV
Sbjct:   33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKRHIRELEEILNTAWATNVECGNWLSYDEQMIKTVSK-------------YEQGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNFCRSGQVACVQWADSNDIFLISTIHV 287
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 8.180e-54
Identity = 96/219 (43.84%), Postives = 134/219 (61.19%), Query Frame = 1 
Query:  688 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFSSPVLFNCLLWHGLFAVGTLKDI 1341
            +IGI +T+GL +   +  HW  S + ++ LV++ M RD+F L+Y RF H +   +P+R  PDG  +  +D+ WHIR  E +LN  W+       W+S+DEQM+  V + +  +  Y P KPIK+G+KL A    + Y   S  DGG  GDPKLR + DCPLGRT R VL VL G C  L +++  SG ++AMDN+F+SP LF CL  H +FA    KDI
Sbjct:   33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMPRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITSYSLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGLFIAMDNYFTSPTLFECLASHDIFAWAGSKDI 251
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 6.220e-52
Identity = 101/234 (43.16%), Postives = 130/234 (55.56%), Query Frame = 1 
Query:  793 TRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHV 1494
            T ++F+L Y RFF++APA       D  YD       HIR  E + N+ WS     G W+S+DEQMV    R    ++RY   KPIKNG+K WA+ C SGYCF    DGGF GD KLR +A CPLGR+ R V++VL  AC   + +++  G  VAMDNFF+   L  CL    +FAVGTL+    G   A   W        ++G M  AR   L   +W DS+ V L+ST HV
Sbjct:    6 TTNLFVLFYGRFFNLAPATGKLNKDDPQYD----CKHHIRKLEDVFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGMAATERGQMLTARSDELVIVKWIDSQEVYLMSTKHV 235
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.400e-50
Identity = 101/197 (51.27%), Postives = 136/197 (69.04%), Query Frame = 1 
Query:  322 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 912
            RG G  + D   K+E +G   SF+PSK TLD+   P+FDP KLGRF   +LG+LAFTFF+ MFP AV+ LLV++TN+YF FC +T        +E RH+ ++   G++SWP  GIT +MM  VI I+LT+GLV+LP + +HW    +HD+KLVR  + RDMFLLIY RFFHMA + +P+R   G+ + GWD+L HIR
Sbjct:  441 RGDGHQYYDCHRKREGEGEDVSFKPSKKTLDA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKG---QEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIR 632
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.790e-48
Identity = 100/197 (50.76%), Postives = 133/197 (67.51%), Query Frame = 1 
Query:  322 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 912
            RG G  + D   K+E +G   SF+PSK T+ +   P+FDP KLGRF   +LG+LAFTFF+ MFP AV+ LLV++T +YF FC +T    E   +E RH+ K+   G++SWP  GIT  MM  VIGI+L +GLV+LP + +HW    +HD+KLVR  + RDM LLIY RFFHMA + +PKR  DG+ + GW +L HIR
Sbjct:  647 RGDGHQYYDCHRKREGEGEDVSFKPSKKTIGA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPKE---QEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIR 838
[Close]
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.800e-47
Identity = 90/195 (46.15%), Postives = 113/195 (57.95%), Query Frame = 1 
Query:  910 RAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHV 1494
            R  E +LNE WS     G W+S+DEQMV    R    ++R+   KPIK G+K WA+ C SGYCF    DGGF GD KLR  A CPLGR+ R VL+VL  ACP  +++++ SG  VAMDNFF+   L  CL    +FAVGTL+    G   A   W        ++GDM  AR   L   +W DS+ V L+ST HV
Sbjct:    3 RELEDLLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASLVRCLATRDIFAVGTLRGNRTGVDLAKHLWDKEGLKATERGDMLTARSDELVIVKWIDSQEVYLMSTKHV 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW40_9PHAE4.840e-7542.43HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JJP9_9PHAE3.690e-6735.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVX6_9PHAE1.110e-6139.14DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KPD8_9PHAE1.760e-5939.93DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KCC7_9PHAE1.180e-5641.11DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KMJ3_9PHAE8.180e-5443.84DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KQZ5_9PHAE6.220e-5243.16DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L3T1_9PHAE1.400e-5051.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JFU5_9PHAE1.790e-4850.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG44_9PHAE2.800e-4746.15DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:451232..458288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog48698.ENSPFOP00000020207
PFAMsDDE_Tnp_1_7,Tnp_zf-ribbon_2
Model size3450
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons6
Evalue9.28e-19
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3CZSB@33213|Bilateria
DescriptionTransposase IS4
Cds size1104
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.96.1prot_P-littoralis_Contig164.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 453074..456296 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789793.8891902-UTR-P-littoralis_Contig164:451231..4530731680789793.8891902-UTR-P-littoralis_Contig164:451231..453073Pylaiella littoralis U1_48UTRP-littoralis_Contig164 451232..453073 -
1680789793.9618714-UTR-P-littoralis_Contig164:456296..4567021680789793.9618714-UTR-P-littoralis_Contig164:456296..456702Pylaiella littoralis U1_48UTRP-littoralis_Contig164 456297..456702 -
1680789793.9726164-UTR-P-littoralis_Contig164:458190..4582881680789793.9726164-UTR-P-littoralis_Contig164:458190..458288Pylaiella littoralis U1_48UTRP-littoralis_Contig164 458191..458288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789793.9020035-CDS-P-littoralis_Contig164:453073..4531561680789793.9020035-CDS-P-littoralis_Contig164:453073..453156Pylaiella littoralis U1_48CDSP-littoralis_Contig164 453074..453156 -
1680789793.9176188-CDS-P-littoralis_Contig164:453970..4544381680789793.9176188-CDS-P-littoralis_Contig164:453970..454438Pylaiella littoralis U1_48CDSP-littoralis_Contig164 453971..454438 -
1680789793.9315443-CDS-P-littoralis_Contig164:454938..4550841680789793.9315443-CDS-P-littoralis_Contig164:454938..455084Pylaiella littoralis U1_48CDSP-littoralis_Contig164 454939..455084 -
1680789793.9397218-CDS-P-littoralis_Contig164:455673..4560411680789793.9397218-CDS-P-littoralis_Contig164:455673..456041Pylaiella littoralis U1_48CDSP-littoralis_Contig164 455674..456041 -
1680789793.950694-CDS-P-littoralis_Contig164:456257..4562961680789793.950694-CDS-P-littoralis_Contig164:456257..456296Pylaiella littoralis U1_48CDSP-littoralis_Contig164 456258..456296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.96.1

>prot_P-littoralis_Contig164.96.1 ID=prot_P-littoralis_Contig164.96.1|Name=mRNA_P-littoralis_Contig164.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=368bp
MFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWP
DGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDM
FLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGAC
LVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFA
SYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYV
AMDNFFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQK
GDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKETSSQSRTVNSPREKRRR
HCGSRCVDSLTTPSWGG*
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mRNA from alignment at P-littoralis_Contig164:451232..458288-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.96.1 ID=mRNA_P-littoralis_Contig164.96.1|Name=mRNA_P-littoralis_Contig164.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7057bp|location=Sequence derived from alignment at P-littoralis_Contig164:451232..458288- (Pylaiella littoralis U1_48)
TGGAAGATGTGGAAGGGAGACGAGCTAACGACGTAGCCGCGCGGCGGACG
GTGTGCTACTGTGGGGCCCCTGCACGATCGCGGACTATCAGGATAGAGGT
GAGCTGCCGCCTAAAGTATTATTGTGTTTTGATTACGTTACTTGATTACT
TTGACTCCTGTGTGCGTGTTTTCGTTGCGTTCCCAAACATCACCCGCCGC
CTTTGCGACGGAGATAACCCGCGGTCTGTTGGACTGCAAACCACCCGTTA
CCTCCTCCAACACACTGAATCAAACGTCACGAGTGATAGGGTTGGCGGCG
CGAAGTTCATCCCGATAATTGGGATAAATGATTCGGTCGTTATACCTTGG
ACCCCCCTGGGGCTTATAAAACAACTCATGGAGCAAAAAAATAACTGGTT
CCGGTGCGCGCCGATGATTGGTGAAAATGATGGACAGTCTGAAAACAAAA
TACTGACGTCTCGCTGACTCTCTACGGCGAAAAAAAGATTGACTTGGGCA
TACACTGAAGTCTGTCCCCAATTTGGCGAAAACAAAATGGGTACAAATTC
CAGTCTAAACCTATGCCAAACTCACTTAGGGGGGTCCACTACACAAAAGA
TTTTCGTACAGTTTTTCAGGAAGTTTCTTGGAAGGGATACTGCTGTATTC
AAGGTAGCACGCAAGCAGCACCACCGCTACTTAGCATGGCAGATCAGGGT
ACCCCGCTCGACAACCACACAGTAGGATTCCACTCCACAAGGTTAAGGTT
TACCCGCGCACGTCATTCACTCAGGGTCTACAGCAGCAGCAGCACTGTAC
AGCAGTCCTATTATTTACTCTGAAGTCAAACATATGTTGCATGATCAAGG
CAGGGTGTCGGTATGTGATGGTACCCATGTGATGATACTCGTACGAGATC
GTCGGGTATGTTTGTGAGCCTTTAAATGTGCGTGGCGCAATGTGTTTGTT
TCTAGTGTTGGCCCGCGTGCGCGTGGTGTGTGTCTCACCAACCAATCGCA
CGACACAAGCTGCTGCAGCATGCACAGCAGCAGTATAGTAGTAAAGTCGC
AGAAATCATGTAAGTGCAGCAGTACATCATCATCATCAGCGTTTCATAGC
AGCGGTAGTGTAACATAGAAGGTATCATGTACTTCGAAGTATTATATGTG
TGCATGTGTGCAACGCAGGGAGAGGTGCCGGCATGGTGTGTGATACAAGA
CGATCGCCGTTCGTTGTGTCTACTGTGCTGTAGAGGGAAGATACTAACAC
ACAACAAACCTAACGGTCGGGCGCGCTTGCTCTCCCGTATTAGTAAAAAA
AACTAAATGTGGCACCGAGGCAGCCAACGATTGGTCGATCCACGTACATT
CCATCGAGCGAGCGCACGGAACCACATCCAAAATACCTGTAGATAGCCGC
CTTCAAAATCCAAGTCACAAAAAATAACAGGTGTCCCCAAATTGTCTCCA
ATTGGGATTGGGCGGTCAGAGGGTTGAATCTACCCCGTTTGAGATTCGCC
AGCACAGTTTCCGGAACGTCACTTAACTCAATCCTCACGGAGCCCCCCAC
ATCCGCTTAATGCCTGCTGCAATCCGCTTCACCCAGGGACCTCTCAAAGG
GCGCACGTTTTCTTCGTGCGCGAACAGAAGCTTGGTCGACCGGTGCGCTT
TACGAGAGTTAGAAGGGGAAAGGGGCGGCGCAGGAGCCGAGGGGAGGACG
ATAGCGACTGGAAAGAGGTTTTCGATTATTTAGCTGATGCTCAACAGAAA
ATTCGGAAAGAAGGTGGCGGACTTGGAGGCGAAGGGTCTGGGGGTGTGGC
AGGAGGGATCGCGGCACCGGGAAGACGTTTGCGGACTTTTTGCACAAGAA
GGAAACTGACGGGTGCCCGAAGTCGTTTCGGCCGTCGAAGTCGACCCTCG
ATTCGGATGAGTATCCAAGTTTCGACCCGTCGAAACTGGGGCGTTTCAAG
AGTGCGCAACTGGGACAGCTGGCATTCACCTTTTTCAACTTCATGTTCCC
CATGGCGGTCGTCGCTCTACTTGTCAAGGAGGTGATACATTGTACCCATT
ATGTCGAGCAGCAGCTTCAAAAGCGGAATGAACGCGCTTATGGGGAAATT
TCGAGGATCTTTCTTTTAGGGGAACGCGGAACACGACATTACCCCCCTCC
CCGCCCCCACTTATTTTTTCCATGAAATAGTGCAACGTCCAAGGCTCACC
GCAAAACGTTTGCGTTATTTATTCCCGTCCCCCGTCTCACAATACAGACG
AACGACTACTTCACCTTCTGCACCACAACACCAACTCGCAATGAGGATGA
CAAGCGTGAAGATCGACACAAGGCGAAGGAACCCACGAATGGGCGCGCGT
CGTGGCCCGACGGTGGCATCACCGCGAACATGATGTACACCGTCATCGGC
ATCGTCTTGACGCTGGGACTTGTGAGGCTTCCGGAAATCGCAAATCACTG
GGACGTGAGCGACTACCACGACTTCAAGTTGGTTCGACAGAGCATGACGC
GAGACATGTTTCTCCTCATCTACAGCCGTTTTTTCCACATGGCGCCCGCC
CCCTCACCGAAGAGACATCCAGATGGCTCCTACGACGAAGGGTGGGATGC
CTTGTGGCATATTCGGTAAGAAGCTCAGCAGCACGCGTGCAGCGGCACGT
TCGAGATGGCCGTGATTAGGTGGTGCTAGCGGTTGTGGATGACACAGGCC
GTGCAGCCTGTAGGCAATCGCAATTCTTTGTTTTGTCATTGTTTCCGGTG
ACGCTGATAAAAAGAAAATGGGGGGTCACAGTTGTCGGAGGTTATTCGTC
GTCTAATGATCGTTTATTTCGCCACACCTCCCGCTGTAGTGTCCATCCCA
AGTTATGCAATAGCGTTTTTTCAGACGGAATGACGCAGTATTCCCCCCGT
TGACACCGAAATCAAAGCGTATCAACGGCTTCACAACAGCGGGTGTCACT
TACTTGTTCCGCCTCTTTTCCGTTGTAATTCATGGTCCGTCCGGGGAGCA
CGAGGTAATGGCCGATGGGGGTTCAGCACTGGTGTCCACAAATGAAATTT
GTGAGGGGCATTGGCGAAAAGTGTTTATCCCGCTTGGTCCAACACACGTT
TTTGATTATTCTCGGCAATATGTGTTTGCTTCGTACATATCAGCTGCAAT
ATCCGTGATAACCCCTTTTGGCGACCGCACCCCGCCGGGCTACGTATGTC
GCAGCGCGTTTGAAACGATGCTGAACGAGACGTGGAGCGGGGCGTGTCTT
GTGGGGCAGTGGATATCTTTCGACGAGCAGATGGTGTTGTGCGTGGGCCG
GACCGCGAAGTTCATGCTGCGGTATATGCCAAAAAAGCCCATCAAGAACG
GTGGGTGATTATCTTTCGGGTCGTGTTTCAGGTTTCATTTGTTTTTTGTG
GGAATTCTGACTATATTTGTGGTACGAACCGCTACTTTTCCACCCTTTTG
CGTGCGAACGAGACGAAAGTGCCACGGAATGTCGAATCTTCGGCTGGCAT
GCCTGACGAGAGCGACGTTTGAAGATGTATGCAAGCGTGCACCGTACTGC
GAAGTTCATGTCGCGGTACAAGTAAAAACAAAACATGATGGGCCGTGGGT
GGTTCATTTTGGATGGTGTCTTTCTTGTGATGTGTTTGGGGTTCCTGTGA
TGTTGATTGAATTCGGGATAAGACTCGTAAATTTTCCTCTGTCGTCGCGT
GCGAGCGCCGCAAGAGTGTTGCAGACTGTGGGACGTGCGGCTGGCATGCG
TCGCAAGGGTGACATATGATCCGGAATCTATATGCGTTCGTAACGAGAGG
CAATGCCCACCATGTGACGCGCTCGCTTGCATGCCCGCGCTTTTTCTCAG
GGCTGAAACTGTGGGCAGTGGCATGTTTCTCTGGCTACTGCTTTGCGAGC
TACACCGACGGCGGTTTCGTCGGAGATCCGAAGCTTCGGAAGTGGGCAGA
TTGCCCGCTCGGCCGGACTTGCCGGATGGTCTTGTTCGTATTGTTCGGGG
CTTGCCCCAACCTCGCGGAGCAGCTCCTGCAATCTGGTACCTACGTGGCC
ATGGACAACTTTTTTTCTTCGCCTGTCCTCTTCAACTGCCTTCTTTGGCA
CGGGTTGTTCGCTGTGGGTACACTGAAGGACATTCACCGGGGAGCCAGCC
AGGCCGTGCGGTATTGGACCACCACCAAGCAGACCCCGAGGCAGAAGGGG
GACATGGCTTTCGCGAGGTTCGGGTTTTTGACCTTCACGCAGTGGAAGGA
CTCCAAGCTTGTCCGGCTTCTCTCCACCATCCACGTCAACAAGGAGACTT
CGTCCCAATCCCGTACAGGTGAAGCTTGCGTCTAGTCGTTGACTAAACAG
TAGTCCAACAAACACTCTTCAACCTGCAGTTTTGGCGCGTCTGGAGCGAG
AGGTTGAGGTCTGAATGCAGGGGGGGAGTGTAGTGGTATTTCGCGTACGC
CCTGTGCGCATTGCGTGTCGTCGGTTCGCGCCCGTCCCCGTTTGGACTTC
GGGTTAGAAATCGTCATTGCCCGTCTTAGTAAAACAGCAGCAGTGTTCAT
TTTTCCGCCGTCATTGCATACTGTAATCCACACTGTTCACCTCCAGTACG
CCCCCCTCCCCTTATTTTCGGCCAAAACACATGAACACATGGCACCCGGA
GCAGTAAGTCAAAACGGCAGATGCGCGAGCATGGAGGGAATCAAAAATAA
CTGCCGACATTATCCCTTTGTACGATAGAAAGAGGGCGTGCTGTAAGTCA
CATTTAGCGATAGCTATCTACAGGGCCGCGTATATAATGTGTGTGTTGTG
CGTGCACTTGGCCTTCGGGCTTTTCTCCCGGGGTAAGGTTGAAGAACTGT
CTTCGTATCCCCGCGCTCGGAATATTTGACGCCAGGTTTTGATTGTTTCA
CTTTTTATTTAACAAAAACAATCTGACAGGATTCCCCAGGAGTGCTGTTC
AAAATAAAACATCACCAAGAGGGAAAAACAGACGTGGTTGCTGCGCGCAA
CTCACGTTCTTTTATTGCCTTTTTGGACCCCCACCTCAGGCGTTTCCTGC
CAAAACTGGTTTTTGACGCTCGTGAAAACATCGCCCTGTCCCCTCACCTC
CCACACTTTCCGTTCTTACTTTGTTCTTCCAGTAAATTCGCCCCGGGAAA
AAAGAAGGAGACACTGTGGCAGCCGCTGTGTCGACTCGCTTACAACACCT
TCATGGGGGGGTTGACCTCGCCGACCAACTAAACGGCTACTACCTTACCC
TCCACAAGGCATACAACTATTTTTGGAGGCGCGTGTTCGAACAGAAGCTC
ATGCAGGCGTGCTCAAACGCGTGGTTGCTGTACAAGTGGTGGCTCGCTGA
CATGCTTGTCCAGGTCAACGAGGAGATTACCAAGGTGGAGAAAGGCGGCT
ACGCAGAGGGCACGCCCGAGCGGTTGCAGCTCCAAGCGTTGGAGAATGAG
CAGGCGGACTTGAGGAAACTCCAGAACAAGAAGCGGGCGCAGTGGTTGCG
AGCTTTGGCCATGCACCTCATCGCTCAGTCAACGCTGGGCCGCCAGGGGA
GGGGGGGGCGGCACCCGCGTAAGTCATCAACGCCGCAGTTCAAGAAGCAT
TATGATCGCCGCGAGCATCTTCACCAGATCGTTCAACGGCGGGACTGCGC
TTCTCCGCACTGCGAGGGTACCCCTGGCGAAAGGGCCCGCGCGCCGAAAC
GCGACCGCAACGCCAAAGTTTCACAAGCATGCTTTTGCCCGTCGTGCTCG
CACGTGGGTGGCGTCGTCATCTGCACGGCCTGCCATGCTGACGACCGAAA
GCACGAGGAGGCGTACCTAAAAACCGCCATGCGAGCGCGCACACCAAAGG
CTACCAAGAGAAGCGTGTTGGAGAAGAAATAGGCACGGCGCCCTCATCTG
GAGTTCGTCCTAGAGAGGGGATGATCGAGGGGGGGAGGGGCTGGCATCCA
ACATCATGGGAAGGGGGATCTCCGGGGTGGGTGCGGCAGGGAAACAGTTC
GTACAGAAAATAACATGGCGTAATTGCAAGGGCCTGGAGCTGCAAGGAGA
GAGGTGGTCTCCGGGGTCTGATGCGACTTTTTGCGGAGTGTAAGCTGTAC
GTGTGCCGAGTCTGTTATTAACCACTTCGTGTTGTTTTTCCGGGTTTGCC
TTCGGATAATTGAAAAGACAGATGTCATGGCGGAAGTCGTTGTGTGTGGA
TATCCCAAGAAATTGTTTCCTACCTGCGTTGCGAGACGGGTCGTGCGGTG
TGGGCTGTTGCGTTGGGGTCTTTGTATAATATTTTTGTGTTTTTTCATTT
TTCAAAACCGGGGTCCCTGCACATGAAACGTTTGACGACGATTATGTCCG
TGGCGTTTTTTCATGTTCCACATCAATCGAAGTCAACACAAGTACCGTCA
AACCCTCTGCCCCCCCCCCCCCGCCATTTCGGCCGAAAAGCATGAAAACT
TGGTTTTGCTCCCTGGGGGAATTAGTTTGGTACTTAAAAATGCACGTTCT
CCCCCCCCTGAGCATGATTTTCCTCCAGGGTAATACTTTTCCGATGGGTA
CCCCCCTGGTGATTTTTTTCTCCAACACGTTTTCTTGCGCTTTTAGCATC
ACTGCTATGAAAGTGGAAAGCGCCTGCTCTTAGAGCCGAACAAGCCGAAG
GAGGTCGGCAGTCGTACGAGGGCATTTACTTTGATGGGGTTGCATGCATT
GCTCATCATCCGCCGTCCACGTTGGGGGTGTTAGTTCCCTTGGTTTGGTG
GTGTGTTGTTGTTTCTAACCGCTGCCTTTGTGTGGACTGCTGTAGTGCGT
GCAGTAGTTTTTTTTGGCTTCACCCCCCGGGGTTATGCACAGTTCCAGAA
TAATACTCGGAGTTGGAAGTATGGCTTTCTGGCCGGGGAGATTTCCCCCT
GCGGTAATATTTGAAAAAAAAGCTGACCCCCCCCCCCCCGGACACGATTT
AGCCCCCAGTGGTTATGTTAAAAAAAAAAAACGAGGCAGAGAGCGTTTGA
CGGTACTTGGTCGGCACGTCGCTCAGCTTTCTCTCCGGGGTGATTTCCCC
CTGCGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig164:451232..458288-

>mRNA_P-littoralis_Contig164.96.1 ID=mRNA_P-littoralis_Contig164.96.1|Name=mRNA_P-littoralis_Contig164.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1104bp|location=Sequence derived from alignment at P-littoralis_Contig164:451232..458288- (Pylaiella littoralis U1_48)
ATGTTCCCCATGGCGGTCGTCGCTCTACTTGTCAAGGAGACGAACGACTA
CTTCACCTTCTGCACCACAACACCAACTCGCAATGAGGATGACAAGCGTG
AAGATCGACACAAGGCGAAGGAACCCACGAATGGGCGCGCGTCGTGGCCC
GACGGTGGCATCACCGCGAACATGATGTACACCGTCATCGGCATCGTCTT
GACGCTGGGACTTGTGAGGCTTCCGGAAATCGCAAATCACTGGGACGTGA
GCGACTACCACGACTTCAAGTTGGTTCGACAGAGCATGACGCGAGACATG
TTTCTCCTCATCTACAGCCGTTTTTTCCACATGGCGCCCGCCCCCTCACC
GAAGAGACATCCAGATGGCTCCTACGACGAAGGGTGGGATGCCTTGTGGC
ATATTCGCGCGTTTGAAACGATGCTGAACGAGACGTGGAGCGGGGCGTGT
CTTGTGGGGCAGTGGATATCTTTCGACGAGCAGATGGTGTTGTGCGTGGG
CCGGACCGCGAAGTTCATGCTGCGGTATATGCCAAAAAAGCCCATCAAGA
ACGGGCTGAAACTGTGGGCAGTGGCATGTTTCTCTGGCTACTGCTTTGCG
AGCTACACCGACGGCGGTTTCGTCGGAGATCCGAAGCTTCGGAAGTGGGC
AGATTGCCCGCTCGGCCGGACTTGCCGGATGGTCTTGTTCGTATTGTTCG
GGGCTTGCCCCAACCTCGCGGAGCAGCTCCTGCAATCTGGTACCTACGTG
GCCATGGACAACTTTTTTTCTTCGCCTGTCCTCTTCAACTGCCTTCTTTG
GCACGGGTTGTTCGCTGTGGGTACACTGAAGGACATTCACCGGGGAGCCA
GCCAGGCCGTGCGGTATTGGACCACCACCAAGCAGACCCCGAGGCAGAAG
GGGGACATGGCTTTCGCGAGGTTCGGGTTTTTGACCTTCACGCAGTGGAA
GGACTCCAAGCTTGTCCGGCTTCTCTCCACCATCCACGTCAACAAGGAGA
CTTCGTCCCAATCCCGTACAGTAAATTCGCCCCGGGAAAAAAGAAGGAGA
CACTGTGGCAGCCGCTGTGTCGACTCGCTTACAACACCTTCATGGGGGGG
TTGA
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