mRNA_P-littoralis_Contig164.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.94.1
Unique NamemRNA_P-littoralis_Contig164.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig164.94.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.020e-22
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:   91 VGSLYCECVGEPQPMKYFTQREERRVAARQHPGTCGVAMAGLIAAVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCFEKACQALWPGDDPI 414
            VG+ YC     P P+   ++  ER+ AA+QH G CG   A  IA ++   V   A+    E T K  RN+ACYDA  ALN RG GVQ+RR +CF  AC+A+WP D P+
Sbjct:   64 VGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVETRAAGA--EITTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPL 169
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BLAST of mRNA_P-littoralis_Contig164.94.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.610e-16
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:  151 REERRVAARQHPGTCGVAMAGLIAAVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCFEKACQALWPGDDPIDEWT 426
            R++   AA++HPG CGV +AG    V  +DV   A RR    TF    NQ C+DAA+ L V G GVQ+ R  CF +A +A++PG+   D+W 
Sbjct:   43 RDQGVEAAKEHPGLCGVYLAG----VSFDDVLAAAERRGVSVTFNVLLNQCCFDAAKKLRVGGMGVQLARKECFTQAFRAVFPGNGTPDQWV 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXC7_9PHAE4.020e-2245.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV53_9PHAE2.610e-1643.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:448644..450171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size440
Hectar predicted targeting categoryother localisation
Exons2
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789793.8488562-CDS-P-littoralis_Contig164:448643..4489431680789793.8488562-CDS-P-littoralis_Contig164:448643..448943Pylaiella littoralis U1_48CDSP-littoralis_Contig164 448644..448943 +
1680789793.8595052-CDS-P-littoralis_Contig164:450031..4501691680789793.8595052-CDS-P-littoralis_Contig164:450031..450169Pylaiella littoralis U1_48CDSP-littoralis_Contig164 450032..450169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.94.1prot_P-littoralis_Contig164.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 448644..450169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.94.1

>prot_P-littoralis_Contig164.94.1 ID=prot_P-littoralis_Contig164.94.1|Name=mRNA_P-littoralis_Contig164.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
ADGSAVHAQLLVVRVGAPHCPHARICPSRVVGSLYCECVGEPQPMKYFTQ
REERRVAARQHPGTCGVAMAGLIAAVETEDVRQTASRRQQEATFKSFRNQ
ACYDAARALNVRGAGVQVRRNRCFEKACQALWPGDDPIDEWTAAGF
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mRNA from alignment at P-littoralis_Contig164:448644..450171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.94.1 ID=mRNA_P-littoralis_Contig164.94.1|Name=mRNA_P-littoralis_Contig164.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1528bp|location=Sequence derived from alignment at P-littoralis_Contig164:448644..450171+ (Pylaiella littoralis U1_48)
GCCGACGGTAGCGCCGTCCATGCCCAGCTTCTCGTCGTGCGTGTTGGAGC
ACCACACTGCCCGCACGCGAGAATTTGCCCCAGCCGTGTCGTTGGCAGCC
TATATTGCGAGTGTGTTGGTGAGCCTCAGCCTATGAAATACTTCACCCAG
CGTGAAGAGCGCAGGGTGGCGGCGAGGCAACATCCTGGAACTTGTGGCGT
CGCGATGGCGGGACTTATCGCTGCTGTCGAAACGGAGGACGTCCGGCAAA
CGGCCTCTCGGAGGCAGCAGGAGGCTACATTCAAATCCTTCAGGAATCAG
GTCAGCACTCGCGGGATGAGAGAACATGTATGTGAGGGTTGCTGTAGTTC
GGCGGCTGCTGCGTGCGTCTGATTGTTGTTTGCGTGTGTTGATCGTCGGG
TGTTGTCGCACATAGTGGCCATGCCGTGTTGTCGGCTGAAGTGCGTTTGC
TTCGTCGCTTCGTGCTTGAGAATTTCCTGCAGCAATTAGTTCTTGTATCA
TACATTTCGAAGCACACTACAGCAGTAGTTCTAAATGTTTCTGCATCTGC
CTCCACCTACCCTGTATAATAACATTATATCATATCATACATGTGGATAA
CTATGTTGTACTTACTTGTCTGATACTTCGTTCGTACCGGTATCTTACAA
CAGCAGTCCCAAACTTGCATGATAGTAGTATCGCATCACGTGATACACAC
CACCAGGTACAGCAGTAGTGTTCACTCGCCATGATTTTACTTCAAAAGCG
CGAAGTTCCGGGTGCATACAAGTTCGCCTACTGATGGATTGGTGCATACA
AGTTCGCGTCGTTCGTGTACATATTGAGTTGCATGCACACCCCTTTCCAG
GTCCCAATAATTCACGTATGTACGTATCATATTTTCTGCACTTGGTATTT
TACACCGTGAGCATACCGGTATCGCACGTGTGCATGGCGAGTAAATTGTG
TGCAGTTTTGAACTGTTTCAAGTTCAAATGTTGTATGGATAGTAAAATCA
CATCATAGGCGGTGATATTTTCATTTCTGGCGACAATTTCCGACAATTTC
CGTATATTCCATATACCGGATGTTACAGTACATACCACACTCCCTAGGCC
GATGTTTACAGCTCGATTGCTGCGTAACAAAGAGAATGCCACAACCAACT
TACCAAGTACATGTTTTCGAGGAGGACCTTACAACATCTTTATGATATCA
CTACAATCGGCAGTGGCACTCGTCTTGATCCTTTCAAATCAGACCAGGTT
TGTTTTGTTCGCTGGCCTTAGTACGTCACATACTTCGTATATGAAGACGA
CACCAAGTGTTGCTGTGCGCTTGTACAGTTTTTGCCTCGTTTGCGGGTTT
TGATCGCTTCCAAAACCGTGTGCCGAACCCCGTGGCAGGCGTGTTATGAC
GCGGCGCGCGCCCTGAATGTGCGGGGAGCgGGGGTTCAAGTCCGTCGCAA
CAGATGCTTCGAGAAAGCGTGCCAGGCGCTTTGGCCTGGGGACGATCCGA
TTGACGAATGGACTGCTGCTGGTTTCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig164:448644..450171+

>mRNA_P-littoralis_Contig164.94.1 ID=mRNA_P-littoralis_Contig164.94.1|Name=mRNA_P-littoralis_Contig164.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig164:448644..450171+ (Pylaiella littoralis U1_48)
GCCGACGGTAGCGCCGTCCATGCCCAGCTTCTCGTCGTGCGTGTTGGAGC
ACCACACTGCCCGCACGCGAGAATTTGCCCCAGCCGTGTCGTTGGCAGCC
TATATTGCGAGTGTGTTGGTGAGCCTCAGCCTATGAAATACTTCACCCAG
CGTGAAGAGCGCAGGGTGGCGGCGAGGCAACATCCTGGAACTTGTGGCGT
CGCGATGGCGGGACTTATCGCTGCTGTCGAAACGGAGGACGTCCGGCAAA
CGGCCTCTCGGAGGCAGCAGGAGGCTACATTCAAATCCTTCAGGAATCAG
GCGTGTTATGACGCGGCGCGCGCCCTGAATGTGCGGGGAGCgGGGGTTCA
AGTCCGTCGCAACAGATGCTTCGAGAAAGCGTGCCAGGCGCTTTGGCCTG
GGGACGATCCGATTGACGAATGGACTGCTGCTGGTTTC
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