mRNA_P-littoralis_Contig164.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.71.1
Unique NamemRNA_P-littoralis_Contig164.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 6.370e-39
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADKAAHFEKRCSVGVIRKCVGAMDGLFVRTIRPTTR 315
            MG LRNGA+PVE QV +TLRWLAG S+YE MDGHVIARSTAY     VI A+N C EL+CKWP   ED A  A  F  R S+ V+RKCVGAMD LFVR I+P+ +
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAK 104          
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 2.100e-36
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADKAAHFEKRCSVGVIRKCVGAMDGLFVRTIRPTTR 315
            MG LRNGA+PVE QV +TLRWLAG S+YE MDGHVIARSTAY     VI A+N C EL+CKWP   ED A  A  F  R S+ V+RKCVGA DGLFVR I+P+ +
Sbjct:   87 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAK 190          
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.050e-35
Identity = 63/104 (60.58%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    4 GALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADKAAHFEKRCSVGVIRKCVGAMDGLFVRTIRPTTR 315
            G LRNGA+PVEYQV +TLRWLAG S+YE MDGHVIARSTAY     VI A+N C EL+CKWP   ED+ +  +       + V+RKCVGAMDGLFVR I+P+ +
Sbjct:   99 GLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAK 201          
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.860e-32
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADKAAHFEKRCSVGVIRKCVGAMDGLFVRTIRPTTR 315
            MGALRNG +PVE+Q+ + LR+LAG S++E MDG+VIARSTAY    RVI AIN   ELDC WP   ED  D+   + +R + GVIR CVGAMDGLFVR  +P+ R
Sbjct:   94 MGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEG-EDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLR 197          
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.490e-32
Identity = 61/105 (58.10%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADKAAHFEKRCSVGVIRKCVGAMDGLFVRTIRPTTR 315
            MG LR GA+PVEYQ+ +TLRWLAG S+YE MDGHVIARSTAY     VI A+N C EL+CKWP    DV               +RKCVGAMDGLFVR I+P+ +
Sbjct:   98 MGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMDV---------------VRKCVGAMDGLFVRMIKPSAK 187          
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 8.050e-31
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADKAAHFEKRCSVGVIRKCVGAMDGLFVRTIRP 306
            MGALRNGA+PVE+Q+ +TLR+LAG S++E MD +VIA+STAY    RVI AIN   +L+CKWP   +D   +A  + +R + GVIR+CVGAMDGLFVR I P
Sbjct:   98 MGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYG-DDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPP 198          
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.930e-29
Identity = 54/83 (65.06%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADKAAHFEKRCSVG 249
            MG LRNGA+PVEYQV +TLRWLAG S+YE MDGHVIARSTAY     VI A+N C EL+CKWP   ED A  A  F  R S G
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAAGAAELFRNRSSYG 82          
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.700e-19
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   91 MDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADKAAHFEKRCSVGVIRKCVGAMDGLFVRTIRPTTR 315
            MD HVIARSTAY     VI A+N C+E++CKWP   ED A  A  F  R S+ V+RKCVGAMDG FVR I+P+ +
Sbjct:    1 MDDHVIARSTAYHETSTVINALNACSEVNCKWPEG-EDAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAK 74          
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.770e-14
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTA----FRVIKAINDC 165
            MG LRNGA+PVEYQV +TLRWLAG S YE MDGHVIARSTAY       +R++  + +C
Sbjct:   98 MGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMAWMMNC 156          
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Match: A0A0L0FJ40_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FJ40_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.000e-9
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDC---KWPATPEDVADKAAHFEKRCSVGVIRKCVGAMDGLF 288
            MG+LRNG++ V  ++  T R LAG+ + +    HV  +ST Y    RV++AIN+ + LD    ++  T ++  + A  F +R + GVI   VGA+DGLF
Sbjct:  151 MGSLRNGSIDVGVRLA-TSRMLAGSQVADLKCTHVKHKSTVYAIFKRVVRAINEVSNLDALRIRFSTTTQECKEIAEGFRQRPTFGVIAYWVGALDGLF 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KD49_9PHAE6.370e-3963.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6B6_9PHAE2.100e-3663.81DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE6.050e-3560.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3F2_9PHAE1.860e-3259.05DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE2.490e-3258.10DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE8.050e-3158.82DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE9.930e-2965.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYU2_9PHAE5.700e-1957.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K540_9PHAE1.770e-1462.71DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A0L0FJ40_9EUKA1.000e-938.38Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:343609..343923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog72019.SARC_10743T0
Model size315
Max annot lvl72019.SARC_10743T0|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.65e-10
EggNOG OGs2D5T8@1|root,2SZJJ@2759|Eukaryota
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789793.458788-CDS-P-littoralis_Contig164:343608..3439231680789793.458788-CDS-P-littoralis_Contig164:343608..343923Pylaiella littoralis U1_48CDSP-littoralis_Contig164 343609..343923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.71.1prot_P-littoralis_Contig164.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 343609..343923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.71.1

>prot_P-littoralis_Contig164.71.1 ID=prot_P-littoralis_Contig164.71.1|Name=mRNA_P-littoralis_Contig164.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIK
AINDCTELDCKWPATPEDVADKAAHFEKRCSVGVIRKCVGAMDGLFVRTI
RPTTR
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mRNA from alignment at P-littoralis_Contig164:343609..343923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.71.1 ID=mRNA_P-littoralis_Contig164.71.1|Name=mRNA_P-littoralis_Contig164.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig164:343609..343923+ (Pylaiella littoralis U1_48)
ATGGGAGCCCTCCGGAACGGCGCCGTTCCGGTCGAGTATCAGGTCGGTTT GACCCTGCGCTGGTTGGCTGGTGCGTCCATGTACGAAGGCATGGACGGGC ATGTCATCGCTAGGAGTACCGCATACCAGACAGCGTTTCGCGTTATCAAG GCCATCAACGACTGTACTGAGCTGGACTGCAAGTGGCCCGCCACGCCGGA GGACGTCGCCGACAAGGCCGCTCACTTCGAGAAACGCTGCTCAGTCGGTG TTATCCGGAAATGCGTCGGGGCCATGGACGGGCTCTTTGTCCGCACCATC AGACCGACCACCAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig164:343609..343923+

>mRNA_P-littoralis_Contig164.71.1 ID=mRNA_P-littoralis_Contig164.71.1|Name=mRNA_P-littoralis_Contig164.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig164:343609..343923+ (Pylaiella littoralis U1_48)
ATGGGAGCCCTCCGGAACGGCGCCGTTCCGGTCGAGTATCAGGTCGGTTT
GACCCTGCGCTGGTTGGCTGGTGCGTCCATGTACGAAGGCATGGACGGGC
ATGTCATCGCTAGGAGTACCGCATACCAGACAGCGTTTCGCGTTATCAAG
GCCATCAACGACTGTACTGAGCTGGACTGCAAGTGGCCCGCCACGCCGGA
GGACGTCGCCGACAAGGCCGCTCACTTCGAGAAACGCTGCTCAGTCGGTG
TTATCCGGAAATGCGTCGGGGCCATGGACGGGCTCTTTGTCCGCACCATC
AGACCGACCACCAGA
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