mRNA_P-littoralis_Contig164.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.63.1
Unique NamemRNA_P-littoralis_Contig164.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.150e-25
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    4 LVPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPRDEIAANLAMKVLVDKMWSEDNGRDQTIAFYGVCSEPGDEESIETGISAE 297
            LVP IK  EQ GRTE +GEC+R FDP S   +P+ ++ PWLR+D K  RD IAANLAM+VL D++W+ D   +  +AFYGV  EPG       G+ AE
Sbjct:  329 LVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAE 426
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BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.390e-25
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    4 LVPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPRDEIAANLAMKVLVDKMWSEDNGRDQTIAFYGVCSEPGDEESIETGISAE 297
            LVP IK  EQ GRTE +GEC+R FDP S   +P+ ++ PWLR+D K  RD IAANLAM+VL D++W+ D   +  +AFYGV  EPG       G+ AE
Sbjct:  418 LVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAE 515
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BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.440e-25
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    4 LVPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPRDEIAANLAMKVLVDKMWSEDNGRDQTIAFYGVCSEPGDEESIETGISAE 297
            LVP IK  EQ GRTE +GEC+R FDP S   +P+ ++ PWLR+D K  RD IAANLAM+VL D++W+ D   +  +AFYGV  EPG       G+ AE
Sbjct: 1437 LVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAE 1534
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BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Match: A0A6H5KTD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.020e-24
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    4 LVPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPRDEIAANLAMKVLVDKMWSEDNGRDQTIAFYGVCSEPG 261
            LVP IK  EQ GRTE +GEC+R FDP S   +P+ ++ PWLR+D K  RD IAANLAM+VL D++W+ D   +  +AFYGV  EPG
Sbjct:  275 LVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPG 360
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BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Match: A0A6H5JUY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.280e-24
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    4 LVPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPRDEIAANLAMKVLVDKMWSEDNGRDQTIAFYGVCSEPGDEESIETGISAE 297
            LVP IK HEQ GRTE +GEC+R FDP S   +P+ ++  WLR+D K  R  IAANLAM+VL D +W+ D   +  +AFYGV  EPG       G++AE
Sbjct:  107 LVPAIKGHEQLGRTEKLGECSRTFDPKSTDPVPSLQYGSWLRADGKAARAGIAANLAMRVLADDVWTGDTKPNGIVAFYGVGGEPGLSGDNHAGVNAE 204
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BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Match: A0A6H5JMF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.090e-23
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    7 VPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPRDEIAANLAMKVLVDKMWSEDNGRDQTIAFYGVCSEPG 261
            +P IK HEQ GRTE +GEC+R FDP S   +P  ++  WLR+D K  RD IAANLAM VL D +W+ D   +  +AFYGV  EPG
Sbjct:    7 LPAIKGHEQLGRTEKLGECSRTFDPKSTDLVPLLQYGSWLRADGKAARDGIAANLAMCVLADDVWTGDTKPNGIVAFYGVGGEPG 91
[Close]
BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Match: A0A6H5JT24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT24_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.030e-21
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    4 LVPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPRDEIAANLAMKVLVDKMWSEDNGRDQTIAFYGVCSEP 258
            LVP I+ HEQ GRTE +GEC+R FDP S   +P      WLR D K  RD IAANLAM+VL D +W+ D   +  +AFYGV  EP
Sbjct:  112 LVPAIRGHEQLGRTETLGECSRTFDPKSTDPVPLLHHGSWLRVDGKAARDGIAANLAMRVLADDVWTADTKPNGIVAFYGVGGEP 196
[Close]
BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Match: A0A6H5L577_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L577_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.670e-21
Identity = 48/86 (55.81%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    4 LVPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPRDEIAANLAMKVLVDKMWSEDNGRDQTIAFYGVCSEPG 261
            LVP IK  EQ  RTE +G C R FDP S +S+P+S+FQPWLR++S   RD IAANLAM VL D+ W  D     T AF GV  E G
Sbjct:  701 LVPVIKGQEQLARTEQVGGCTRDFDPSSTESVPSSQFQPWLRANSNEARDGIAANLAMNVLADEKWDGDQKPTGTAAFDGVGREVG 786
[Close]
BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Match: A0A6H5JK56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK56_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.790e-16
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    4 LVPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPRDEIAANLAMKVLVDKMWSED 210
            LVP IK HEQ GRTE +G C+R FD  S   +P+ +   WLR+D K  RD IAANLAM+VL D +W+ D
Sbjct:  537 LVPAIKGHEQRGRTEKLGGCSRTFDLKSTDPVPSLQNGSWLRADGKAARDGIAANLAMRVLADDVWTAD 605
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JAK2_9PHAE2.150e-2552.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTG2_9PHAE2.390e-2552.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE2.440e-2552.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTD3_9PHAE1.020e-2455.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY2_9PHAE5.280e-2451.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMF3_9PHAE1.090e-2354.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT24_9PHAE1.030e-2154.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L577_9PHAE3.670e-2155.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK56_9PHAE6.790e-1655.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:316672..316980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size311
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789793.2164893-CDS-P-littoralis_Contig164:316671..3169801680789793.2164893-CDS-P-littoralis_Contig164:316671..316980Pylaiella littoralis U1_48CDSP-littoralis_Contig164 316672..316980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.63.1prot_P-littoralis_Contig164.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 316672..316980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.63.1

>prot_P-littoralis_Contig164.63.1 ID=prot_P-littoralis_Contig164.63.1|Name=mRNA_P-littoralis_Contig164.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
VLVPFIKEHEQAGRTENIGECARVFDPLSDKSIPTSEFQPWLRSDSKVPR
DEIAANLAMKVLVDKMWSEDNGRDQTIAFYGVCSEPGDEESIETGISAEA
RSV
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mRNA from alignment at P-littoralis_Contig164:316672..316980-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.63.1 ID=mRNA_P-littoralis_Contig164.63.1|Name=mRNA_P-littoralis_Contig164.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig164:316672..316980- (Pylaiella littoralis U1_48)
GTACTCGTGCCGTTTATCAAAGAGCATGAGCAAGCCGGGCGGACAGAGAA
TATCGGGGAGTGCGCTCGGGTGTTCGATCCGTTGTCAGACAAATCAATCC
CCACTTCAGAGTTTCAGCCCTGGCTTCGATCCGACTCGAAGGTACCACGG
GATGAAATTGCCGCGAACCTCGCCATGAAGGTACTAGTAGACAAGATGTG
GTCAGAAGACAACGGGCGTGATCAGACCATAGCCTTCTACGGTGTCTGTA
GTGAGCCTGGCGACGAAGAGAGCATAGAAACTGGTATTAGCGCCGAGGCT
CGCAGTGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig164:316672..316980-

>mRNA_P-littoralis_Contig164.63.1 ID=mRNA_P-littoralis_Contig164.63.1|Name=mRNA_P-littoralis_Contig164.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig164:316672..316980- (Pylaiella littoralis U1_48)
GTACTCGTGCCGTTTATCAAAGAGCATGAGCAAGCCGGGCGGACAGAGAA
TATCGGGGAGTGCGCTCGGGTGTTCGATCCGTTGTCAGACAAATCAATCC
CCACTTCAGAGTTTCAGCCCTGGCTTCGATCCGACTCGAAGGTACCACGG
GATGAAATTGCCGCGAACCTCGCCATGAAGGTACTAGTAGACAAGATGTG
GTCAGAAGACAACGGGCGTGATCAGACCATAGCCTTCTACGGTGTCTGTA
GTGAGCCTGGCGACGAAGAGAGCATAGAAACTGGTATTAGCGCCGAGGCT
CGCAGTGTT
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