mRNA_P-littoralis_Contig164.51.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI) HSP 1 Score: 128 bits (322), Expect = 7.480e-35 Identity = 77/161 (47.83%), Postives = 99/161 (61.49%), Query Frame = 1
Query: 1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
+I+ RQ R D+RVSGG KL RCTGA+I G +GCPV R Q W TE +C+ A K +R + R VE EA+ALVS+NH+I+ +L K LK TSG+ S+R+ASRMRA++LGK I +YQ+L S C L R+NGNIVEC
Sbjct: 1 MISQSRQCRLDKRVSGGRGKLHRCTGAIINGKATSGCPVRARGCKQTDGTWKVTEVVLDHVACTGQAGNKK-------QRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVEC 154
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE) HSP 1 Score: 129 bits (325), Expect = 8.900e-35 Identity = 80/161 (49.69%), Postives = 99/161 (61.49%), Query Frame = 1
Query: 1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
+I+ RQ R D+RVSGG KL RCTGAVI G +GCPVL RA W TE +C+ A K +R + R VE EA+ALVSSN +I+ ALAK LK TSG+ S+RTA RMRA++LGK I +YQ+L S C L R+NGN+VEC
Sbjct: 47 MISTSRQCRLDKRVSGGRGKLHRCTGAVINGKATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKK-------QRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVEC 200
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE) HSP 1 Score: 129 bits (325), Expect = 4.390e-32 Identity = 80/161 (49.69%), Postives = 99/161 (61.49%), Query Frame = 1
Query: 1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
+I+ RQ R D+RVSGG KL RCTGAVI G +GCPVL RA W TE +C+ A K +R + R VE EA+ALVSSN +I+ ALAK LK TSG+ S+RTA RMRA++LGK I +YQ+L S C L R+NGN+VEC
Sbjct: 47 MISTSRQCRLDKRVSGGRGKLHRCTGAVINGKATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKK-------QRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVEC 200
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE) HSP 1 Score: 120 bits (301), Expect = 2.380e-30 Identity = 73/161 (45.34%), Postives = 95/161 (59.01%), Query Frame = 1
Query: 1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTES------CSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
+I+ RQ R D+R SGG +KL RCTGA+I G +GCPV R Q W TE+ C+ A K R R VE +A+ALVS+NH+I+ +L K LK TSG+ S+RTA RMR ++LGK I +YQ+L + C L R+NGNIVEC
Sbjct: 1 MISQSRQCRLDKRDSGGRSKLHRCTGAIINGKATSGCPVRARGCKQTDGTWKVTEAVLDHVACTGQAGNKKQGINR-------RCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE) HSP 1 Score: 117 bits (292), Expect = 5.520e-29 Identity = 71/156 (45.51%), Postives = 92/156 (58.97%), Query Frame = 1
Query: 1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNG 444
+I RQ R D+R+ GG KL RCTGA++ G +GCPVL R Q W TE +C+ A K +R + R VE EA+ALVS+NH I+ +L K LK TSG+ S+RTASRMRA++LGK I +YQ+L S C L R+NG
Sbjct: 155 MIAQSRQCRLDKRIIGGRGKLHRCTGAIVNGKATSGCPVLARGCKQTDGTWKVTEVVLDHVACTGQASNKK-------QRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.860e-20 Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1
Query: 70 CTGAVIKG--ATGCPVLVRAYMQKSKEWGDTESCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
CTGA++ G +GCPV R Q W + +G ++ +R + R VE EA+ LVS+NH I+ +L K LK TSG+ S+RTASRMRA++LGK I +YQ+L S L R+N NIVEC
Sbjct: 21 CTGAIVNGKATSGCPVRARGCKQTDGTWKVMDVVLDHVARTGQAGNKK-QRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVEC 151 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig164.51.1 >prot_P-littoralis_Contig164.51.1 ID=prot_P-littoralis_Contig164.51.1|Name=mRNA_P-littoralis_Contig164.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp LITDGRQRRADERVSGGMAKLRRCTGAVIKGATGCPVLVRAYMQKSKEWGback to top mRNA from alignment at P-littoralis_Contig164:250235..250706- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig164.51.1 ID=mRNA_P-littoralis_Contig164.51.1|Name=mRNA_P-littoralis_Contig164.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=472bp|location=Sequence derived from alignment at P-littoralis_Contig164:250235..250706- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig164:250235..250706- >mRNA_P-littoralis_Contig164.51.1 ID=mRNA_P-littoralis_Contig164.51.1|Name=mRNA_P-littoralis_Contig164.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig164:250235..250706- (Pylaiella littoralis U1_48)back to top |