mRNA_P-littoralis_Contig164.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.51.1
Unique NamemRNA_P-littoralis_Contig164.51.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 7.480e-35
Identity = 77/161 (47.83%), Postives = 99/161 (61.49%), Query Frame = 1
Query:    1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
            +I+  RQ R D+RVSGG  KL RCTGA+I G   +GCPV  R   Q    W  TE      +C+  A   K       +R + R VE EA+ALVS+NH+I+  +L K LK TSG+  S+R+ASRMRA++LGK    I  +YQ+L S C  L R+NGNIVEC
Sbjct:    1 MISQSRQCRLDKRVSGGRGKLHRCTGAIINGKATSGCPVRARGCKQTDGTWKVTEVVLDHVACTGQAGNKK-------QRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVEC 154          
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 8.900e-35
Identity = 80/161 (49.69%), Postives = 99/161 (61.49%), Query Frame = 1
Query:    1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
            +I+  RQ R D+RVSGG  KL RCTGAVI G   +GCPVL RA       W  TE      +C+  A   K       +R + R VE EA+ALVSSN +I+  ALAK LK TSG+  S+RTA RMRA++LGK    I  +YQ+L S C  L R+NGN+VEC
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVINGKATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKK-------QRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVEC 200          
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.390e-32
Identity = 80/161 (49.69%), Postives = 99/161 (61.49%), Query Frame = 1
Query:    1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
            +I+  RQ R D+RVSGG  KL RCTGAVI G   +GCPVL RA       W  TE      +C+  A   K       +R + R VE EA+ALVSSN +I+  ALAK LK TSG+  S+RTA RMRA++LGK    I  +YQ+L S C  L R+NGN+VEC
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVINGKATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKK-------QRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVEC 200          
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.380e-30
Identity = 73/161 (45.34%), Postives = 95/161 (59.01%), Query Frame = 1
Query:    1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTES------CSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
            +I+  RQ R D+R SGG +KL RCTGA+I G   +GCPV  R   Q    W  TE+      C+  A   K    R       R VE +A+ALVS+NH+I+  +L K LK TSG+  S+RTA RMR ++LGK    I  +YQ+L + C  L R+NGNIVEC
Sbjct:    1 MISQSRQCRLDKRDSGGRSKLHRCTGAIINGKATSGCPVRARGCKQTDGTWKVTEAVLDHVACTGQAGNKKQGINR-------RCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154          
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.520e-29
Identity = 71/156 (45.51%), Postives = 92/156 (58.97%), Query Frame = 1
Query:    1 LITDGRQRRADERVSGGMAKLRRCTGAVIKG--ATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNG 444
            +I   RQ R D+R+ GG  KL RCTGA++ G   +GCPVL R   Q    W  TE      +C+  A   K       +R + R VE EA+ALVS+NH I+  +L K LK TSG+  S+RTASRMRA++LGK    I  +YQ+L S C  L R+NG
Sbjct:  155 MIAQSRQCRLDKRIIGGRGKLHRCTGAIVNGKATSGCPVLARGCKQTDGTWKVTEVVLDHVACTGQASNKK-------QRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303          
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.860e-20
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   70 CTGAVIKG--ATGCPVLVRAYMQKSKEWGDTESCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNIVEC 459
            CTGA++ G   +GCPV  R   Q    W   +           +G ++ +R + R VE EA+ LVS+NH I+  +L K LK TSG+  S+RTASRMRA++LGK    I  +YQ+L S    L R+N NIVEC
Sbjct:   21 CTGAIVNGKATSGCPVRARGCKQTDGTWKVMDVVLDHVARTGQAGNKK-QRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVEC 151          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZQ7_ECTSI7.480e-3547.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JX21_9PHAE8.900e-3549.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4I0_9PHAE4.390e-3249.69SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KQC0_9PHAE2.380e-3045.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5Y0_9PHAE5.520e-2945.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L768_9PHAE2.860e-2043.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:250235..250706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size459
Hectar predicted targeting categoryother localisation
Exons2
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789793.0500667-CDS-P-littoralis_Contig164:250234..2506031680789793.0500667-CDS-P-littoralis_Contig164:250234..250603Pylaiella littoralis U1_48CDSP-littoralis_Contig164 250235..250603 -
1680789793.0598783-CDS-P-littoralis_Contig164:250616..2507061680789793.0598783-CDS-P-littoralis_Contig164:250616..250706Pylaiella littoralis U1_48CDSP-littoralis_Contig164 250617..250706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.51.1prot_P-littoralis_Contig164.51.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 250235..250706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.51.1

>prot_P-littoralis_Contig164.51.1 ID=prot_P-littoralis_Contig164.51.1|Name=mRNA_P-littoralis_Contig164.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
LITDGRQRRADERVSGGMAKLRRCTGAVIKGATGCPVLVRAYMQKSKEWG
DTESCSAGAHELKWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKR
LKVTSGISYSDRTASRMRANVLGKDLADIKGQYQMLDSCCSALARNNGNI
VEC
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mRNA from alignment at P-littoralis_Contig164:250235..250706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.51.1 ID=mRNA_P-littoralis_Contig164.51.1|Name=mRNA_P-littoralis_Contig164.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=472bp|location=Sequence derived from alignment at P-littoralis_Contig164:250235..250706- (Pylaiella littoralis U1_48)
CTCATTACTGACGGAAGGCAGCGCCGAGCGGACGAGCGAGTGTCTGGCGG GATGGCGAAGCTGCGCCGCTGCACCGGAGCGGTCATCAAGGTGAATGTGA AAGGGGGCAACGGGCTGCCCAGTGCTCGTACGCGCGTACATGCAGAAAAG CAAGGAATGGGGTGACACCGAAAGTTGTAGTGCTGGAGCACACGAACTGA AGTGGTCAGGCAGGCGAGAGACAGAGAGACCCTCCTGCCGGTCTGTCGAG GCCGAGGCGTCGGCGTTGGTTAGCTCGAACCACAATATATCGTCCGACGC ACTTGCCAAGAGGCTAAAGGTAACCTCCGGGATTTCATACTCGGACCGCA CGGCGAGCCGCATGCGCGCCAATGTGCTTGGGAAAGATCTTGCCGATATC AAGGGACAGTACCAAATGCTCGACAGCTGTTGCAGCGCTCTCGCGCGCAA CAACGGCAACATCGTTGAGTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig164:250235..250706-

>mRNA_P-littoralis_Contig164.51.1 ID=mRNA_P-littoralis_Contig164.51.1|Name=mRNA_P-littoralis_Contig164.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig164:250235..250706- (Pylaiella littoralis U1_48)
CTCATTACTGACGGAAGGCAGCGCCGAGCGGACGAGCGAGTGTCTGGCGG
GATGGCGAAGCTGCGCCGCTGCACCGGAGCGGTCATCAAGGGGGCAACGG
GCTGCCCAGTGCTCGTACGCGCGTACATGCAGAAAAGCAAGGAATGGGGT
GACACCGAAAGTTGTAGTGCTGGAGCACACGAACTGAAGTGGTCAGGCAG
GCGAGAGACAGAGAGACCCTCCTGCCGGTCTGTCGAGGCCGAGGCGTCGG
CGTTGGTTAGCTCGAACCACAATATATCGTCCGACGCACTTGCCAAGAGG
CTAAAGGTAACCTCCGGGATTTCATACTCGGACCGCACGGCGAGCCGCAT
GCGCGCCAATGTGCTTGGGAAAGATCTTGCCGATATCAAGGGACAGTACC
AAATGCTCGACAGCTGTTGCAGCGCTCTCGCGCGCAACAACGGCAACATC
GTTGAGTGT
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