mRNA_P-littoralis_Contig164.50.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig164.50.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI) HSP 1 Score: 100 bits (248), Expect = 8.460e-24 Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 2
Query: 71 KGATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELQWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLAGIKGQYQMLDSCCSALARNNGNIVEC 442
K +GCPV R Q W TE +C+ A G ++ +R + R VE EA+ALVS+NH+I+ +L K LK TSG+ S+R+ASRMRA++LGK I +YQ+L S C L R+NGNIVEC
Sbjct: 32 KATSGCPVRARGCKQTDGTWKVTEVVLDHVACTGQA------GNKK-QRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVEC 154
BLAST of mRNA_P-littoralis_Contig164.50.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.440e-23 Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 2
Query: 71 KGATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELQWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLAGIKGQYQMLDSCCSALARNNGNIVEC 442
K +GCPVL RA W TE +C+ A G ++ +R + R VE EA+ALVSSN +I+ ALAK LK TSG+ S+RTA RMRA++LGK I +YQ+L S C L R+NGN+VEC
Sbjct: 78 KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQA------GNKK-QRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVEC 200
BLAST of mRNA_P-littoralis_Contig164.50.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.070e-21 Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 2
Query: 71 KGATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELQWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLAGIKGQYQMLDSCCSALARNNGNIVEC 442
K +GCPVL RA W TE +C+ A G ++ +R + R VE EA+ALVSSN +I+ ALAK LK TSG+ S+RTA RMRA++LGK I +YQ+L S C L R+NGN+VEC
Sbjct: 78 KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQA------GNKK-QRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVEC 200
BLAST of mRNA_P-littoralis_Contig164.50.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 2.570e-20 Identity = 55/130 (42.31%), Postives = 73/130 (56.15%), Query Frame = 2
Query: 71 KGATGCPVLVRAYMQKSKEWGDTES------CSAGAHELQWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLAGIKGQYQMLDSCCSALARNNGNIVEC 442
K +GCPV R Q W TE+ C+ A + R R VE +A+ALVS+NH+I+ +L K LK TSG+ S+RTA RMR ++LGK I +YQ+L + C L R+NGNIVEC
Sbjct: 32 KATSGCPVRARGCKQTDGTWKVTEAVLDHVACTGQAGNKKQGINR-------RCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154
BLAST of mRNA_P-littoralis_Contig164.50.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.440e-19 Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 2
Query: 71 KGATGCPVLVRAYMQKSKEWGDTE------SCSAGAHELQWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLAGIKGQYQMLDSCCSALARNNG 427
K +GCPVL R Q W TE +C+ A + +R + R VE EA+ALVS+NH I+ +L K LK TSG+ S+RTASRMRA++LGK I +YQ+L S C L R+NG
Sbjct: 186 KATSGCPVLARGCKQTDGTWKVTEVVLDHVACTGQAS-------NKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303
BLAST of mRNA_P-littoralis_Contig164.50.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.250e-18 Identity = 53/124 (42.74%), Postives = 71/124 (57.26%), Query Frame = 2
Query: 71 KGATGCPVLVRAYMQKSKEWGDTESCSAGAHELQWSGRRETERPSCRSVEAEASALVSSNHNISSDALAKRLKVTSGISYSDRTASRMRANVLGKDLAGIKGQYQMLDSCCSALARNNGNIVEC 442
K +GCPV R Q W + +G ++ +R + R VE EA+ LVS+NH I+ +L K LK TSG+ S+RTASRMRA++LGK I +YQ+L S L R+N NIVEC
Sbjct: 29 KATSGCPVRARGCKQTDGTWKVMDVVLDHVARTGQAGNKK-QRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVEC 151 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig164.50.1 >prot_P-littoralis_Contig164.50.1 ID=prot_P-littoralis_Contig164.50.1|Name=mRNA_P-littoralis_Contig164.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp MQKSKEWGDTESCSAGAHELQWSGRRETERPSCRSVEAEASALVSSNHNIback to top mRNA from alignment at P-littoralis_Contig164:248609..249050+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig164.50.1 ID=mRNA_P-littoralis_Contig164.50.1|Name=mRNA_P-littoralis_Contig164.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=442bp|location=Sequence derived from alignment at P-littoralis_Contig164:248609..249050+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig164:248609..249050+ >mRNA_P-littoralis_Contig164.50.1 ID=mRNA_P-littoralis_Contig164.50.1|Name=mRNA_P-littoralis_Contig164.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig164:248609..249050+ (Pylaiella littoralis U1_48)back to top |