mRNA_P-littoralis_Contig164.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.49.1
Unique NamemRNA_P-littoralis_Contig164.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig164.49.1 vs. uniprot
Match: D7FMA8_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA8_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.840e-36
Identity = 83/177 (46.89%), Postives = 110/177 (62.15%), Query Frame = 2 
Query:  266 YMQLVPRSRDIEGRQARLPTYRHRLKRSSSLPDNKLDRKIRILAVWYVLLAGLEDVETPRRGFCFVAAINSFEFGQVDAKFTKTI-KSLQGGVPLRIGSINIC*PPTFFRMVWATLSTRSCTSKKIVKKTVRVVSETGVEVQSALVYIVAPEDMP--VGEKALDFVVWLVGLARNEA 787
            ++QLVP +RDIEGRQ  +          SS  D  L+R++R+L+VWYVLLA LEDVET RRGFCFV    + +  Q D  F K + +SLQG +P+RIGSINIC PPTFFR+VW  ++       + VK+ VRV+  T  EV   L  IV P+ +P  +G K  +F  WL   A+ +A
Sbjct:   73 FVQLVPGTRDIEGRQVVMIV--------SSNMDKTLERRLRLLSVWYVLLAALEDVETQRRGFCFVGYQKAVKRSQADPTFVKMVMQSLQGALPVRIGSINICYPPTFFRVVWGIINPFL---HERVKRRVRVIPGTDAEVLGVLGAIVPPDGLPPPMGPKPKEFSAWLAEQAQKDA 238
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BLAST of mRNA_P-littoralis_Contig164.49.1 vs. uniprot
Match: D7FMA7_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA7_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.220e-33
Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 2 
Query:  266 YMQLVPRSRDIEGRQARLPTYRHRLKRSSSLPDNKLDRKIRILAVWYVLLAGLEDVETPRRGFCFVAAINSFEFGQVDAKFTKTI-KSLQGGVPLRIGSINIC*PPTFFRMVWATLSTRSCTSKKIVKKTVRVVSETGVEVQSALVYIVAPEDMP--VGEKALDFVVWLVGLARNE 784
            + Q+VP S+D EGRQ  L         ++   D  LDRK+R+ AVWYVLLA LEDVET R+GFCFV  + +    QVD KF K +  S+QG +P+R+GS+N+C PP+FFR +W  +ST      + V+   R +     +V  AL   VAPE++P  +G K LDF  WL    + E
Sbjct:  114 FCQIVPGSKDREGRQVVLV--------NTGQADKTLDRKMRVRAVWYVLLAALEDVETQRKGFCFVVTLKTARISQVDQKFNKMVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFL---HERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRKPLDFQGWLAERQKAE 278
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMA8_ECTSI1.840e-3646.89CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
D7FMA7_ECTSI1.220e-3343.75CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:241550..244874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMA8
PFAMsCRAL_TRIO
Model size787
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03005,ko:K14861
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.68e-24
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size306
COG categoryS
BRITEbr01611,ko00000,ko00001,ko00002,ko03009,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.49.1prot_P-littoralis_Contig164.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 242131..244368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789792.904845-UTR-P-littoralis_Contig164:241549..2416971680789792.904845-UTR-P-littoralis_Contig164:241549..241697Pylaiella littoralis U1_48UTRP-littoralis_Contig164 241550..241697 -
1680789792.9182174-UTR-P-littoralis_Contig164:242065..2421301680789792.9182174-UTR-P-littoralis_Contig164:242065..242130Pylaiella littoralis U1_48UTRP-littoralis_Contig164 242066..242130 -
1680789792.9658551-UTR-P-littoralis_Contig164:244368..2444501680789792.9658551-UTR-P-littoralis_Contig164:244368..244450Pylaiella littoralis U1_48UTRP-littoralis_Contig164 244369..244450 -
1680789792.9752374-UTR-P-littoralis_Contig164:244688..2448741680789792.9752374-UTR-P-littoralis_Contig164:244688..244874Pylaiella littoralis U1_48UTRP-littoralis_Contig164 244689..244874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789792.9303136-CDS-P-littoralis_Contig164:242130..2422111680789792.9303136-CDS-P-littoralis_Contig164:242130..242211Pylaiella littoralis U1_48CDSP-littoralis_Contig164 242131..242211 -
1680789792.9410315-CDS-P-littoralis_Contig164:242713..2428451680789792.9410315-CDS-P-littoralis_Contig164:242713..242845Pylaiella littoralis U1_48CDSP-littoralis_Contig164 242714..242845 -
1680789792.9538734-CDS-P-littoralis_Contig164:244275..2443681680789792.9538734-CDS-P-littoralis_Contig164:244275..244368Pylaiella littoralis U1_48CDSP-littoralis_Contig164 244276..244368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.49.1

>prot_P-littoralis_Contig164.49.1 ID=prot_P-littoralis_Contig164.49.1|Name=mRNA_P-littoralis_Contig164.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MQLVPRSRDIEGRQARLPTYRHRLKRSSSLPDNKLDRKIRILAVWYVLLA
GLEDVETPRRGFCFVAAINSFEFGQVDAKFTKTIKSLQGGVPLRIGSINI
C*
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mRNA from alignment at P-littoralis_Contig164:241550..244874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.49.1 ID=mRNA_P-littoralis_Contig164.49.1|Name=mRNA_P-littoralis_Contig164.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3325bp|location=Sequence derived from alignment at P-littoralis_Contig164:241550..244874- (Pylaiella littoralis U1_48)
CTTAGCTCAGAAACTAAAGAGCTCCTGGCGGCGGGCTTATCGGCAATGAA
GGTTGGTTTCGAGGAGCGCCCCGCGTGAAGCGGTGCTCCCTGCCCCCTGA
CAGACGAATTCCTCCTCATGTTTCTGCGGACGGAGTTATCTTCTCCATCC
GCTGCTGCCGGACGCTATCGCAAATTCTGGAAGGGGGTGTATGCCACCTT
TATTAAAAATGGTACGAGGCACCTCGGGGGGGGGCAATTTTTGTATTACC
TCACACTCTCCTAGTGCTGTAGCACATATGATACATACGAAGTACAACTT
TCTAGCCCGCCTACTGTTGCACCACCTTTTGTGGTCCTTTTCGACTTGCC
TCGGAGCTTGCGCCCGACCAGCCCCCAACAAAAATCGCTCTGATGCCTTT
ACTTTTCAAAACCGATGGGTGAAGGTATCCCTTTGTGGCGAAATGAAAAC
GGCCTCTCCAATCAGGGTGGAGGACGCCAAGGCCGGCCTGAACATGCGGT
ACGTATATGCAGCTGGTTCCCCGGAGCAGGGACATCGAAGGCCGACAGGC
AAGACTCCCCACATATCGACATCGTCTTAAACGTTCATCTTCTCTGCCTG
TCATCACTACATGGCACAGTTTGATGGAACTGCTCCCGTAGTAAATGCCT
CTAGGTTCAGTGTTGACTCCGGCGGGCTAGAGTACCGTGAAAAGTGATAG
GACCTCGAAGTTCGACCGGAGGAAATTATGTAAGAGCTTTGAAAACCCTC
CCTTAGTCGGGGTCGTTTTTGGGATGCCCTGCACTATGTGCTCCTTGATC
TTTGTTCTCAATCGCTCGAGGCTTCTTACTTGAACTTCCCAGCTGATCAA
TTTTTCTGCGGTTTGCTTTTAGAAACAAACCTGAGCATGAACTGATGACC
GCTCACCTCTACGCCGATACTGCGGAGGATGTTTTTTGAAAGTCCGATAC
TTAGGAGGATGTTTTGTGAAAGTCCCGTTGTCCCGACAGCGAGGGAACAG
CAAATACACGTGGAGAGGTAGGCAGGTCGTAGGCACTTCTTGCCATTGTT
GATCAGAGCACTTCAAATACATCTGTGACAAAGAATCGGCCAGCGGTCAC
TGGGACCTTGACTGCGACAAAGCAGCTGCGCGTGATGAACAGTTCACAGG
GCTGCCGTAAAGTACTCCGTTTACAATAGAATAGCCCGCCAGCTCCTACG
GGATGTCTCCCCCCGGCATCGCTACTGCGAAAGAAGAGTCCACATTCGTC
TGCGACTAAACACCTTGCCAGTTCACGGCACCCAGAGCACAGGAACACAC
ACAAATGGCATTGCGGTTTTCGTCGTGCCTGGCTCAGGCGTGATTTTAGA
GCAAACGTTTGTAGCACTTCAGGCTTTCGCGCTTCGAGCTGAAAGTCGTC
GCACAGGGAACGCTGCGCTGCTGAACATGCGTCCGAACACTGCACACTGT
CGCCAATTTCTGAGGCGACCCTGCGCGCACAACCAACTCCGTCAGCACTG
ACTGGGTGCGTGCGGGGGAAATGTGTGTCACTTTACGATATCATTCAGCT
GCGGGTCTTGAATTCCAACCGAAGCCACCAAAGCAGCACCTTTTGTGGAC
ATTAGCCATGAACACACACTAGCTCCCTCCGCCAGCCTCTGCCCACTCCA
AATCTCAGGGTAGATATTACTGTGCAGGACTACCATCACGCCCGCAATAA
AAATCCACGGAAAGCTCGACTGCTGTGGCTGTCTTGTCTCCTTGTCTCTT
CTTGCTTGTCTTGGTGCCTTGGGTCGGTACTGCTTGCCCTGCGGCAATCT
ATCATTTTCCCAAGCACGCGCAACACTGCAGAACAAAGTTTTACTTGTAA
ATTTACGAGCTTAGGTGAGTTTCATGCGAATTCAATAGCAACAGTCACAT
GATAACGATAACATACCAGTTATTAGGCAGACAGCAGAACCCCACCTTGA
CCTCAACCCATGGACTATTTTTTCGAAAATGGGTCGAAAATATCGAACCT
CAGGTGGTGCTGGTGAGCCCGGCAACGAGGATAACAAACTGGACAGGAAG
ATCCGAATCCTCGCCGTGTGGTACGTTCTTTTAGCGGGGCTGGAGGACGT
TGAAACTCCGAGAAGAGGCTTTTGCTTCGTAGCAGCCATCAATTCTTTCG
AGTTTGGGCAGGTGCAGCACAGTGTGTGGCGAAGGAATCGATGTGCTTTT
CAACTGTTTCCAACGATGGGACCAGCAGAGTTTCTCTGGTTCGAAGTAAC
CACGGAGCATCGCGGGTCTGAAAACAGCCGTCTACACCACTGAACGTACA
CTAAAGGGCGGGGTGCGCCTGGTGCTGTGCTATTGTTCGAATGATGCTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTA
CTGCCGTGCGTAGGCATCTTGACCGCTTTTTACATCACACCTGACCTCGT
CGTTCTGTGCTGATCTCTGGCAGAACGACCGACACTTCGTTGAACGCGTT
TCTCATTGTCACAGCAGGCCACCATCAAACTAATCGAGCGAGTAAGGACT
CTTTTGTTGAGTTTGCGCTTGTTTCTGTCGTTATTTTTGCGTGCTCGAGT
GCGTGCAGCGGCGTGTGTTGCCGTAGCGCTTGTTCCCTCTTTGTGCCGTC
TTCATCAAACCAGGTGGATGCCAAGTTCACCAAGACCATAAAGAGCCTGC
AGGGGGGGGTTCCGTTGCGGATCGGAAGCATAAACATTTGCTAACCGCCC
ACGTTCTTCCGCATGGTGTGGGCGACCCTGAGCACACGTTCCTGCACGAG
TAAGAAAATGTACCTTGCGTTTTTTTTAGTTCTGTCCAGGTGCGCGGGGG
GGGGATGCACCTCTATTTGCACAAGGTTCCGGGCAAATTTGCACATTGAA
TGTTTCTTGATTCTTACTTCCCTTCTGCTATGATACCGAAACTCGTGCGT
TATCAACACTGGAATGGCTTACCTGGTGAGCAAGACAAGCCAAAGTTCAA
TGCTCTCTCCCCCTACCCCCGCCCACAGCCCCCCTTGAAGTAACTCGCTT
GAGGGTAAGAACGGTGCTCCGTCCCCGTGGTGATGATGCGCGTTCAATGG
TCAAGCGACTACTGTAAGGCAAGAAAAAATGAATACGTCCCCAGCCCCCG
CTCCCTGGTTTTGCACGCGCCTGGGAGAGTAAAGAAGACGGTTCGGGTCG
TCTCTGAGACTGGTGTAGAGGTGCAAAGCGCCCTTGTCTACATCGTGGCA
CCCGAAGACATGCCAGTGGGAGAGAAAGCGCTGGACTTCGTGGTGTGGCT
GGTGGGGCTTGCTCGGAACGAAGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig164:241550..244874-

>mRNA_P-littoralis_Contig164.49.1 ID=mRNA_P-littoralis_Contig164.49.1|Name=mRNA_P-littoralis_Contig164.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig164:241550..244874- (Pylaiella littoralis U1_48)
ATGCAGCTGGTTCCCCGGAGCAGGGACATCGAAGGCCGACAGGCAAGACT
CCCCACATATCGACATCGTCTTAAACGTTCATCTTCTCTGCCTGATAACA
AACTGGACAGGAAGATCCGAATCCTCGCCGTGTGGTACGTTCTTTTAGCG
GGGCTGGAGGACGTTGAAACTCCGAGAAGAGGCTTTTGCTTCGTAGCAGC
CATCAATTCTTTCGAGTTTGGGCAGGTGGATGCCAAGTTCACCAAGACCA
TAAAGAGCCTGCAGGGGGGGGTTCCGTTGCGGATCGGAAGCATAAACATT
TGCTAA
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