mRNA_P-littoralis_Contig164.19.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE) HSP 1 Score: 384 bits (987), Expect = 6.320e-125 Identity = 224/349 (64.18%), Postives = 253/349 (72.49%), Query Frame = 2
Query: 179 TAFRRSPRLAAEAHRRHRSSSGAFAAGPGSALCTSARK---GSRRALAVRTRAXXXXXXXXXXXXXXASVSSAAGREDSGADIAKPKRAKRVSNAKGVGAIPAGTKKKACTLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGL--AKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSFLKKMEASGGKLSEHK 1210
TA RRSPRLAAE RRH SSGAF AGP C +RRA+A R+ +S AAG E SGAD+ +R +RVS KGV A KK TLGR+RE+RK EGF VIG+DEAGRGPFAGPVVAAAC +PPD+NILGI+DSKK+ +HS RE L+KELTE+PGVIWATSEVGS RIDEINILEATKEAMT C EV SK+ + + KPFVLVDGNFTPPGL AK+++E VVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWP++GFERHKGY T+AHRDAIREHGMVEIHRRSFLK ME+SGGKL+E+K
Sbjct: 23 TAARRSPRLAAEVRRRH-GSSGAFNAGP----CPPREPLGVSNRRAIATSARSK-------------SSSPLAAGAESSGADVRPKRRIRRVSKPKGVTASVQ--KKTKSTLGRTRENRKLAEGFDAVIGLDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFKELTETPGVIWATSEVGSSRIDEINILEATKEAMTNCVLEVCSKSVEPSANKGMKTNWKKN----ASDKKPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSFLKNMESSGGKLAEYK 347
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: D8RCY3_SELML (Ribonuclease (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RCY3_SELML) HSP 1 Score: 186 bits (471), Expect = 4.080e-51 Identity = 101/205 (49.27%), Postives = 131/205 (63.90%), Query Frame = 2
Query: 551 VIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF 1165
VIGVDEAGRGP AGPVVAAAC +P D++I GI DSKK+ RE LY ++T +PGV ++ V + RIDEINIL+AT EAM C E+ + P++L+DGN P GL+ + VV GD + IAAASI+AKVTRDRLM ++ +RWP+YGF+ HKGY T++H A+ +HG +IHRRSF
Sbjct: 3 VIGVDEAGRGPLAGPVVAAACIIPEDVDIQGIDDSKKLTAEK-REQLYSQITSTPGVRFSICVVDAPRIDEINILQATMEAMETCVEELTGNG---------------------RDHPPYILIDGNRIPGGLSGKHARSVVKGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIHRRSF 185
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A225WDA0_9STRA (Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDA0_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.040e-50 Identity = 123/258 (47.67%), Postives = 149/258 (57.75%), Query Frame = 2
Query: 416 IAKPKRAKRVSNAKGVGAIPAGTKKKACTLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKMEA 1183
I P RA R S K K+ TL R E R +G+ VIGVDEAGRGP AGPVVAAAC VP D+ I G+ DSKK+ RE L++ LT P + +A ++RIDEINIL+A+ E+MT+ EV K + K FVLVDGN PP L ++ +E VV GD Y IAAASIIAKVTRDRLM E+ E++P YG +HKGY T AH AI +HG EIHR +F LK EA
Sbjct: 36 IPVPSRAPRASKPKKT--AKKDEKQSISTLSRVFETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REELFELLTNHPKITYAVHVNSAQRIDEINILQASLESMTKSVNEVAEKLQQDKT---------------------FVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRAHVAAIAKHGPCEIHRMTFAPLKPKEA 268
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: G4Z1P2_PHYSP (Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1P2_PHYSP) HSP 1 Score: 186 bits (473), Expect = 1.340e-50 Identity = 114/230 (49.57%), Postives = 142/230 (61.74%), Query Frame = 2
Query: 500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKMEA 1183
TL R+ E R + +G+ VIGVDEAGRGP AGPVVAAAC VP D+ I G+ DSKK+ REAL++ LT P + +A ++RIDEINIL+A+ E+MT+ A EV + + K FVLVDGN PP L ++ +E VV GD Y IAAASIIAKVTRDRLM E+ E++P YG +HKGY T H AI +HG IHR +F LK EA
Sbjct: 35 TLARTFETRYQAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMTKSANEVAERLQQTD--------------------KTFVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEQYPQYGLAKHKGYPTRDHVAAIAKHGPCAIHRMTFAPLKPKEA 242
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: W2QYI7_PHYPN (Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepID=W2QYI7_PHYPN) HSP 1 Score: 182 bits (463), Expect = 7.640e-49 Identity = 112/230 (48.70%), Postives = 139/230 (60.43%), Query Frame = 2
Query: 500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKMEA 1183
TL R E R +G+ VIGVDEAGRGP GPVVAAAC VP D+ I G+ DSKK+ REAL++ LT P + +A ++RIDEINIL+A+ E+MT+ EV + + K FVLVDGN PP L ++ +E V+ GD Y IAAASIIAKVTRDRLM E+ E++P YG +HKGY T H AI +HG EIHR +F LK EA
Sbjct: 62 TLSRIFETRYEAKGYTTVIGVDEAGRGPLVGPVVAAACHVPLDVTIPGVDDSKKILEPQ-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLESMTKSVNEVAERLQQKD--------------------KTFVLVDGNKLPPTL-ELPAEAVIKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRGHVAAIAKHGPCEIHRMTFAPLKPKEA 269
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A2P6V851_9CHLO (Ribonuclease n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V851_9CHLO) HSP 1 Score: 182 bits (462), Expect = 6.370e-48 Identity = 102/222 (45.95%), Postives = 130/222 (58.56%), Query Frame = 2
Query: 500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF 1165
T R E+ +G+ LV GVDEAGRGP AGPVVAAAC VPP ++I+GI DSKK+ REALY++LT P ++WA V + ID INIL+A +AM A + + FVLVDGN P GL S +V GD +CIAAAS+IAKVTRDR+M ++ E+WP Y F HKGY H +A+R+HG +HRR+F
Sbjct: 97 TASREFEEELWAQGYKLVAGVDEAGRGPLAGPVVAAACVVPPHVSIVGIDDSKKLSAEQ-REALYEQLTGHPDILWAAQVVDAGEIDTINILQAALKAMEGAAGALAQRPD-------------------------FVLVDGNRLPKGLDPERSRTLVKGDSRCFCIAAASVIAKVTRDRIMEQYHEQWPQYNFAGHKGYCVPEHVEAVRKHGPCPVHRRTF 292
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A485LSD3_9STRA (Ribonuclease n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSD3_9STRA) HSP 1 Score: 178 bits (451), Expect = 3.080e-47 Identity = 102/222 (45.95%), Postives = 133/222 (59.91%), Query Frame = 2
Query: 500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF 1165
TL R E R +G++ V+GVDEAGRGP AGPVVAAAC+VP D+ GI DSK++ + RE L+++LT V +A RIDEINIL+AT E+MT+ + KA + L+DGN PP K+ EFV+ GDG + IAAASIIAKVTRDR+M+++ ++WP Y F +HKGY T AH AI +HG IHR +F
Sbjct: 76 TLSRDFEQRMVNKGYSYVVGVDEAGRGPLAGPVVAAACYVPLDVTFEGIYDSKQL-NEAQRELLFEQLTTHKDVHYAVHINSPARIDEINILQATLESMTKSVEGLAIKAD-------------------------YALIDGNKMPP--LKIPGEFVIKGDGKVFAIAAASIIAKVTRDRIMVDYDKQWPAYNFAQHKGYGTRAHMAAIHKHGASPIHRMTF 269
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: H3G7Z9_PHYRM (Ribonuclease n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7Z9_PHYRM) HSP 1 Score: 175 bits (444), Expect = 3.120e-47 Identity = 105/216 (48.61%), Postives = 131/216 (60.65%), Query Frame = 2
Query: 518 EDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF 1165
E R +G+ VIGVDEAGRGP AGPVVAAAC VP D+ + G+ DSKK+ REAL++ LT P + +A ++RIDEINIL+A+ E+M EV + + K FVLVDGN PP L ++ +E VV GD Y IAAASIIAKVTRDRLM ++ E++P YG +HKGY T AH AI EHG IHR +F
Sbjct: 2 EARCEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTLDGVDDSKKILEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMAYSVNEVAERLQQKD--------------------KTFVLVDGNKLPPML-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMRQYDEQYPQYGLAQHKGYPTRAHVAAIAEHGACAIHRMTF 195
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A0P1ACX4_PLAHL (Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACX4_PLAHL) HSP 1 Score: 177 bits (450), Expect = 3.200e-47 Identity = 109/235 (46.38%), Postives = 143/235 (60.85%), Query Frame = 2
Query: 500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKMEASGGKL 1198
TL R E R + +G++ VIGVDEAGRGP AGPVVAAAC VP D+ I G+ DSKK+ + REAL++ LT P + +A ++RIDEINIL+A+ EAMT+ +V + + FVLVDGN PP L + +E VV GD + IAAASIIAKVTRDR+M + +++P YG +HKGY T AH AI +HG +IHR +F LK + S K+
Sbjct: 53 TLSRQFETRYKAKGYSTVIGVDEAGRGPLAGPVVAAACHVPLDVVIEGVDDSKKILQER-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLEAMTKAVNDVTKRLLQKDNI--------------------FVLVDGNKLPPTL-DLPAEAVVKGDSKVFSIAAASIIAKVTRDRIMRNYDDQYPQYGLAQHKGYPTRAHVAAIAKHGPCKIHRMTFAPLKPKDMSKSKI 265
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A7S1TPP4_9STRA (Uracil-DNA glycosylase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPP4_9STRA) HSP 1 Score: 187 bits (476), Expect = 3.300e-47 Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 2
Query: 503 LGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISK--ASKAKXXXXXXXXXXXXXXXXSKPPKP---FVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKME 1180
L + RE RGEG +LV+GVDEAGRGP AGPVV AAC +P DI+I GI DSK+ REALY + +PGV WA + + +RRIDEINIL+AT E M +C ++ K AS+ ++P + + L+DGN P L E +V GDG EY I AASI+AKVTRDRLM+++ +P Y ++HKGY T+ H AI +HG IHRR+F LK M+
Sbjct: 130 LPKHREQTVRGEGMSLVMGVDEAGRGPLAGPVVTAACAMPVDISIPGINDSKQTTEEQ-REALYDLIVATPGVRWAVAVIDARRIDEINILKATMEGMAKCCAAIMEKKDASRPADASRSGCYVVTGSCGEAEPFRKASCYALIDGNRVPQALP-CRGEALVKGDGREYIIGAASILAKVTRDRLMVQYAGMYPEYDLQQHKGYPTAGHMAAIHKHGPCPIHRRTFAPLKHMD 360 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig164.19.3 >prot_P-littoralis_Contig164.19.3 ID=prot_P-littoralis_Contig164.19.3|Name=mRNA_P-littoralis_Contig164.19.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=372bp MRLVVASASGLLAMGIKKAASTTAISTAFRRSPRLAAEAHRRHRSSSGAFback to top mRNA from alignment at P-littoralis_Contig164:107041..115500+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig164.19.3 ID=mRNA_P-littoralis_Contig164.19.3|Name=mRNA_P-littoralis_Contig164.19.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=8460bp|location=Sequence derived from alignment at P-littoralis_Contig164:107041..115500+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig164:107041..115500+ >mRNA_P-littoralis_Contig164.19.3 ID=mRNA_P-littoralis_Contig164.19.3|Name=mRNA_P-littoralis_Contig164.19.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1116bp|location=Sequence derived from alignment at P-littoralis_Contig164:107041..115500+ (Pylaiella littoralis U1_48)back to top |