mRNA_P-littoralis_Contig164.19.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.19.3
Unique NamemRNA_P-littoralis_Contig164.19.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 6.320e-125
Identity = 224/349 (64.18%), Postives = 253/349 (72.49%), Query Frame = 2
Query:  179 TAFRRSPRLAAEAHRRHRSSSGAFAAGPGSALCTSARK---GSRRALAVRTRAXXXXXXXXXXXXXXASVSSAAGREDSGADIAKPKRAKRVSNAKGVGAIPAGTKKKACTLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGL--AKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSFLKKMEASGGKLSEHK 1210
            TA RRSPRLAAE  RRH  SSGAF AGP    C         +RRA+A   R+              +S   AAG E SGAD+   +R +RVS  KGV A     KK   TLGR+RE+RK  EGF  VIG+DEAGRGPFAGPVVAAAC +PPD+NILGI+DSKK+ +HS RE L+KELTE+PGVIWATSEVGS RIDEINILEATKEAMT C  EV SK+ +                  +   KPFVLVDGNFTPPGL  AK+++E VVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWP++GFERHKGY T+AHRDAIREHGMVEIHRRSFLK ME+SGGKL+E+K
Sbjct:   23 TAARRSPRLAAEVRRRH-GSSGAFNAGP----CPPREPLGVSNRRAIATSARSK-------------SSSPLAAGAESSGADVRPKRRIRRVSKPKGVTASVQ--KKTKSTLGRTRENRKLAEGFDAVIGLDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFKELTETPGVIWATSEVGSSRIDEINILEATKEAMTNCVLEVCSKSVEPSANKGMKTNWKKN----ASDKKPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSFLKNMESSGGKLAEYK 347          
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: D8RCY3_SELML (Ribonuclease (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RCY3_SELML)

HSP 1 Score: 186 bits (471), Expect = 4.080e-51
Identity = 101/205 (49.27%), Postives = 131/205 (63.90%), Query Frame = 2
Query:  551 VIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF 1165
            VIGVDEAGRGP AGPVVAAAC +P D++I GI DSKK+     RE LY ++T +PGV ++   V + RIDEINIL+AT EAM  C  E+                         +   P++L+DGN  P GL+   +  VV GD   + IAAASI+AKVTRDRLM ++ +RWP+YGF+ HKGY T++H  A+ +HG  +IHRRSF
Sbjct:    3 VIGVDEAGRGPLAGPVVAAACIIPEDVDIQGIDDSKKLTAEK-REQLYSQITSTPGVRFSICVVDAPRIDEINILQATMEAMETCVEELTGNG---------------------RDHPPYILIDGNRIPGGLSGKHARSVVKGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIHRRSF 185          
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A225WDA0_9STRA (Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDA0_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.040e-50
Identity = 123/258 (47.67%), Postives = 149/258 (57.75%), Query Frame = 2
Query:  416 IAKPKRAKRVSNAKGVGAIPAGTKKKACTLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKMEA 1183
            I  P RA R S  K         K+   TL R  E R   +G+  VIGVDEAGRGP AGPVVAAAC VP D+ I G+ DSKK+     RE L++ LT  P + +A     ++RIDEINIL+A+ E+MT+   EV  K  + K                      FVLVDGN  PP L ++ +E VV GD   Y IAAASIIAKVTRDRLM E+ E++P YG  +HKGY T AH  AI +HG  EIHR +F  LK  EA
Sbjct:   36 IPVPSRAPRASKPKKT--AKKDEKQSISTLSRVFETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REELFELLTNHPKITYAVHVNSAQRIDEINILQASLESMTKSVNEVAEKLQQDKT---------------------FVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRAHVAAIAKHGPCEIHRMTFAPLKPKEA 268          
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: G4Z1P2_PHYSP (Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1P2_PHYSP)

HSP 1 Score: 186 bits (473), Expect = 1.340e-50
Identity = 114/230 (49.57%), Postives = 142/230 (61.74%), Query Frame = 2
Query:  500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKMEA 1183
            TL R+ E R + +G+  VIGVDEAGRGP AGPVVAAAC VP D+ I G+ DSKK+     REAL++ LT  P + +A     ++RIDEINIL+A+ E+MT+ A EV  +  +                      K FVLVDGN  PP L ++ +E VV GD   Y IAAASIIAKVTRDRLM E+ E++P YG  +HKGY T  H  AI +HG   IHR +F  LK  EA
Sbjct:   35 TLARTFETRYQAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMTKSANEVAERLQQTD--------------------KTFVLVDGNKLPPTL-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDEQYPQYGLAKHKGYPTRDHVAAIAKHGPCAIHRMTFAPLKPKEA 242          
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: W2QYI7_PHYPN (Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepID=W2QYI7_PHYPN)

HSP 1 Score: 182 bits (463), Expect = 7.640e-49
Identity = 112/230 (48.70%), Postives = 139/230 (60.43%), Query Frame = 2
Query:  500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKMEA 1183
            TL R  E R   +G+  VIGVDEAGRGP  GPVVAAAC VP D+ I G+ DSKK+     REAL++ LT  P + +A     ++RIDEINIL+A+ E+MT+   EV  +  +                      K FVLVDGN  PP L ++ +E V+ GD   Y IAAASIIAKVTRDRLM E+ E++P YG  +HKGY T  H  AI +HG  EIHR +F  LK  EA
Sbjct:   62 TLSRIFETRYEAKGYTTVIGVDEAGRGPLVGPVVAAACHVPLDVTIPGVDDSKKILEPQ-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLESMTKSVNEVAERLQQKD--------------------KTFVLVDGNKLPPTL-ELPAEAVIKGDSKVYSIAAASIIAKVTRDRLMREYDEKFPQYGLAQHKGYPTRGHVAAIAKHGPCEIHRMTFAPLKPKEA 269          
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A2P6V851_9CHLO (Ribonuclease n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V851_9CHLO)

HSP 1 Score: 182 bits (462), Expect = 6.370e-48
Identity = 102/222 (45.95%), Postives = 130/222 (58.56%), Query Frame = 2
Query:  500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF 1165
            T  R  E+    +G+ LV GVDEAGRGP AGPVVAAAC VPP ++I+GI DSKK+     REALY++LT  P ++WA   V +  ID INIL+A  +AM   A  +  +                           FVLVDGN  P GL    S  +V GD   +CIAAAS+IAKVTRDR+M ++ E+WP Y F  HKGY    H +A+R+HG   +HRR+F
Sbjct:   97 TASREFEEELWAQGYKLVAGVDEAGRGPLAGPVVAAACVVPPHVSIVGIDDSKKLSAEQ-REALYEQLTGHPDILWAAQVVDAGEIDTINILQAALKAMEGAAGALAQRPD-------------------------FVLVDGNRLPKGLDPERSRTLVKGDSRCFCIAAASVIAKVTRDRIMEQYHEQWPQYNFAGHKGYCVPEHVEAVRKHGPCPVHRRTF 292          
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A485LSD3_9STRA (Ribonuclease n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSD3_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.080e-47
Identity = 102/222 (45.95%), Postives = 133/222 (59.91%), Query Frame = 2
Query:  500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF 1165
            TL R  E R   +G++ V+GVDEAGRGP AGPVVAAAC+VP D+   GI DSK++   + RE L+++LT    V +A       RIDEINIL+AT E+MT+    +  KA                          + L+DGN  PP   K+  EFV+ GDG  + IAAASIIAKVTRDR+M+++ ++WP Y F +HKGY T AH  AI +HG   IHR +F
Sbjct:   76 TLSRDFEQRMVNKGYSYVVGVDEAGRGPLAGPVVAAACYVPLDVTFEGIYDSKQL-NEAQRELLFEQLTTHKDVHYAVHINSPARIDEINILQATLESMTKSVEGLAIKAD-------------------------YALIDGNKMPP--LKIPGEFVIKGDGKVFAIAAASIIAKVTRDRIMVDYDKQWPAYNFAQHKGYGTRAHMAAIHKHGASPIHRMTF 269          
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: H3G7Z9_PHYRM (Ribonuclease n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7Z9_PHYRM)

HSP 1 Score: 175 bits (444), Expect = 3.120e-47
Identity = 105/216 (48.61%), Postives = 131/216 (60.65%), Query Frame = 2
Query:  518 EDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF 1165
            E R   +G+  VIGVDEAGRGP AGPVVAAAC VP D+ + G+ DSKK+     REAL++ LT  P + +A     ++RIDEINIL+A+ E+M     EV  +  +                      K FVLVDGN  PP L ++ +E VV GD   Y IAAASIIAKVTRDRLM ++ E++P YG  +HKGY T AH  AI EHG   IHR +F
Sbjct:    2 EARCEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTLDGVDDSKKILEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMAYSVNEVAERLQQKD--------------------KTFVLVDGNKLPPML-ELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMRQYDEQYPQYGLAQHKGYPTRAHVAAIAEHGACAIHRMTF 195          
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A0P1ACX4_PLAHL (Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACX4_PLAHL)

HSP 1 Score: 177 bits (450), Expect = 3.200e-47
Identity = 109/235 (46.38%), Postives = 143/235 (60.85%), Query Frame = 2
Query:  500 TLGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKXXXXXXXXXXXXXXXXSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKMEASGGKL 1198
            TL R  E R + +G++ VIGVDEAGRGP AGPVVAAAC VP D+ I G+ DSKK+ +   REAL++ LT  P + +A     ++RIDEINIL+A+ EAMT+   +V  +  +                        FVLVDGN  PP L  + +E VV GD   + IAAASIIAKVTRDR+M  + +++P YG  +HKGY T AH  AI +HG  +IHR +F  LK  + S  K+
Sbjct:   53 TLSRQFETRYKAKGYSTVIGVDEAGRGPLAGPVVAAACHVPLDVVIEGVDDSKKILQER-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLEAMTKAVNDVTKRLLQKDNI--------------------FVLVDGNKLPPTL-DLPAEAVVKGDSKVFSIAAASIIAKVTRDRIMRNYDDQYPQYGLAQHKGYPTRAHVAAIAKHGPCKIHRMTFAPLKPKDMSKSKI 265          
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Match: A0A7S1TPP4_9STRA (Uracil-DNA glycosylase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPP4_9STRA)

HSP 1 Score: 187 bits (476), Expect = 3.300e-47
Identity = 110/233 (47.21%), Postives = 143/233 (61.37%), Query Frame = 2
Query:  503 LGRSREDRKRGEGFALVIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKELTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISK--ASKAKXXXXXXXXXXXXXXXXSKPPKP---FVLVDGNFTPPGLAKMDSEFVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEIHRRSF--LKKME 1180
            L + RE   RGEG +LV+GVDEAGRGP AGPVV AAC +P DI+I GI DSK+      REALY  +  +PGV WA + + +RRIDEINIL+AT E M +C   ++ K  AS+                  ++P +    + L+DGN  P  L     E +V GDG EY I AASI+AKVTRDRLM+++   +P Y  ++HKGY T+ H  AI +HG   IHRR+F  LK M+
Sbjct:  130 LPKHREQTVRGEGMSLVMGVDEAGRGPLAGPVVTAACAMPVDISIPGINDSKQTTEEQ-REALYDLIVATPGVRWAVAVIDARRIDEINILKATMEGMAKCCAAIMEKKDASRPADASRSGCYVVTGSCGEAEPFRKASCYALIDGNRVPQALP-CRGEALVKGDGREYIIGAASILAKVTRDRLMVQYAGMYPEYDLQQHKGYPTAGHMAAIHKHGPCPIHRRTFAPLKHMD 360          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.19.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJW9_9PHAE6.320e-12564.18Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D8RCY3_SELML4.080e-5149.27Ribonuclease (Fragment) n=5 Tax=Selaginella moelle... [more]
A0A225WDA0_9STRA1.040e-5047.67Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=... [more]
G4Z1P2_PHYSP1.340e-5049.57Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID... [more]
W2QYI7_PHYPN7.640e-4948.70Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepI... [more]
A0A2P6V851_9CHLO6.370e-4845.95Ribonuclease n=1 Tax=Micractinium conductrix TaxID... [more]
A0A485LSD3_9STRA3.080e-4745.95Ribonuclease n=1 Tax=Aphanomyces stellatus TaxID=1... [more]
H3G7Z9_PHYRM3.120e-4748.61Ribonuclease n=1 Tax=Phytophthora ramorum TaxID=16... [more]
A0A0P1ACX4_PLAHL3.200e-4746.38Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=47... [more]
A0A7S1TPP4_9STRA3.300e-4747.21Uracil-DNA glycosylase n=1 Tax=Phaeomonas parva Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:107041..115500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM98
PFAMsRNase_HII
Model size2132
Max annot lvl2759|Eukaryota
KEGG koko:K03470,ko:K10743
KEGG Pathwayko03030,map03030
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
Exons7
Evalue3.7e-135
EggNOG OGsCOG0164@1|root,KOG2299@2759|Eukaryota
Ec32 ortholog descriptionRibonuclease HII/HIII
Ec32 orthologEc-17_003740.1
EC3.1.26.4
DescriptionRNA-DNA hybrid ribonuclease activity
Cds size1116
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.19.3prot_P-littoralis_Contig164.19.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 107141..114584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789791.681589-UTR-P-littoralis_Contig164:107040..1071401680789791.681589-UTR-P-littoralis_Contig164:107040..107140Pylaiella littoralis U1_48UTRP-littoralis_Contig164 107041..107140 +
1680789791.7846122-UTR-P-littoralis_Contig164:114584..1155001680789791.7846122-UTR-P-littoralis_Contig164:114584..115500Pylaiella littoralis U1_48UTRP-littoralis_Contig164 114585..115500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789791.6922822-CDS-P-littoralis_Contig164:107140..1072991680789791.6922822-CDS-P-littoralis_Contig164:107140..107299Pylaiella littoralis U1_48CDSP-littoralis_Contig164 107141..107299 +
1680789791.7095766-CDS-P-littoralis_Contig164:111351..1116151680789791.7095766-CDS-P-littoralis_Contig164:111351..111615Pylaiella littoralis U1_48CDSP-littoralis_Contig164 111352..111615 +
1680789791.7217107-CDS-P-littoralis_Contig164:112008..1120751680789791.7217107-CDS-P-littoralis_Contig164:112008..112075Pylaiella littoralis U1_48CDSP-littoralis_Contig164 112009..112075 +
1680789791.7308147-CDS-P-littoralis_Contig164:112394..1124651680789791.7308147-CDS-P-littoralis_Contig164:112394..112465Pylaiella littoralis U1_48CDSP-littoralis_Contig164 112395..112465 +
1680789791.7435963-CDS-P-littoralis_Contig164:113088..1132261680789791.7435963-CDS-P-littoralis_Contig164:113088..113226Pylaiella littoralis U1_48CDSP-littoralis_Contig164 113089..113226 +
1680789791.7599163-CDS-P-littoralis_Contig164:113659..1139051680789791.7599163-CDS-P-littoralis_Contig164:113659..113905Pylaiella littoralis U1_48CDSP-littoralis_Contig164 113660..113905 +
1680789791.773693-CDS-P-littoralis_Contig164:114413..1145841680789791.773693-CDS-P-littoralis_Contig164:114413..114584Pylaiella littoralis U1_48CDSP-littoralis_Contig164 114414..114584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.19.3

>prot_P-littoralis_Contig164.19.3 ID=prot_P-littoralis_Contig164.19.3|Name=mRNA_P-littoralis_Contig164.19.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=372bp
MRLVVASASGLLAMGIKKAASTTAISTAFRRSPRLAAEAHRRHRSSSGAF
AAGPGSALCTSARKGSRRALAVRTRAGSSSSSPSPSSLSLASVSSAAGRE
DSGADIAKPKRAKRVSNAKGVGAIPAGTKKKACTLGRSREDRKRGEGFAL
VIGVDEAGRGPFAGPVVAAACFVPPDINILGIRDSKKVPRHSGREALYKE
LTESPGVIWATSEVGSRRIDEINILEATKEAMTECAFEVISKASKAKSKK
AKSKKAKSKKAKGSKPPKPFVLVDGNFTPPGLAKMDSEFVVGGDGLEYCI
AAASIIAKVTRDRLMIEFGERWPMYGFERHKGYATSAHRDAIREHGMVEI
HRRSFLKKMEASGGKLSEHKG*
back to top

mRNA from alignment at P-littoralis_Contig164:107041..115500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.19.3 ID=mRNA_P-littoralis_Contig164.19.3|Name=mRNA_P-littoralis_Contig164.19.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=8460bp|location=Sequence derived from alignment at P-littoralis_Contig164:107041..115500+ (Pylaiella littoralis U1_48)
TATGGACATGCACGGGCACACATGACGCAGGGGTGGACACGCACAGGGAA GCCTACCATCTCAAGTGAGGATTCTGGCTATTGGAAATTCTAGCTCGTGG ATGCGCCTCGTAGTTGCCTCGGCATCGGGCCTTCTTGCGATGGGTATTAA AAAAGCGGCATCCACAACGGCAATATCCACCGCCTTCAGACGTTCTCCGC GCCTGGCGGCGGAGGCACACCGACGCCACCGCAGCAGCAGCGGAGCCTTT GCAGCAGGGGTAAGGCTTGCATTTGGGCGCGGCTAGTGAATCAAAAAGTG ATATTCTTCGTCGGGAGCTGCTGCTCCAAATGCGTGTGAATACTGATATC CAGCATGTTGCACACACGCGGACACAACAGCACAGAGTTTAGTACCCAAC TTTCTTTGTCGACGTTCATGTTTTCAGTACAAAAAGGACAAATAGCACGA TAATGTACACCGACTGCTATTGCCATTGTAAGAATAAAGGGCCAAAAATA AAATACTCTGTCGTTGTGTTTACTCCATCCGATGAGTTTATACAGAGACA CAATCACTACTGTGATAGAAGGTTGCAGTACTAGGGTTGTGTTTCAAGAA TGATTGCAGGGTTGTGTTTGAAGATCCATCACTGCGGTTGTGTATTGGCG CGCTCGCAGCGCGCAGCATCGATACTCTGCTGGTGTAATATTTATGTGGT GGCGAATCACTCAGCCGATATGCCGATATTACCCCCGGATACTCGTATAT CGTCGAGGCCGGGGAATATAAAATATCGATAACCGAGCGAAGCGAGGCGG CGGAGGAGACGGTCCCCCGGCTGTCCACATATTTTACCGATCGTGCAAAC GGGATGGGTTCTCAGCTTCTGATTGGACAAGAGCTCGGGGATTGGTGTTG GTTCTCTCACGTGCCGCGCGCAGCGTGGCACATGGCCTCTGGGCCTGAGG GTGACTGCTTTTGTGTAAAATGAGTCCTCCTCTCTTAGGGTTGGGGTAAG GGTAAGGGTTGGGTTGGGGCGGGGCGGGTAGGGTTAGGGCAATCGGCGGG GTTCATCGTCAAACAAAGCCGTTGAAATAAAGTGCCGAAAGAAAAACAGC GCTGTCGGCTTCGAACCGCTATCCATATAAGCCAATCAGATGGTCTGTCC TTCGGGCAGGCAGCCAGGCAGACAAACAGGCAGCCACCCTACAGTTCCCA ACCCCCACCCCCACCCCTCCTGCCACCTGCGATATTTTTGGTTACTGACC CGAACAGCAACATTTAGCCGTAAGACCGTGTCTTACGGCTCCGTTATTTG GTTCTGCGTTTTTTCTCCAGAGGTACCCCCCCCCCAAAAACAGAGAGCCC AAACGAAAAAACTACTTTTTGAGCACAACAGGAGACAGCACCAAGCAGAA CTCGACCCCTGGGACACCAATCGAGACTGTAACTGTTGGACGGTACGCTC TAGTGTTCTCAGGCTGGCCACAGGAAATTTGGTGGGTGTGGGCTTTGGCT GTGGCGAGATTTCGGCGGCGGAGTGGGTTGAGGTAGGAAAATCCGGTGGA AAAAAAAAATGCTGTCCGAGCCTATTTTTTGGCCAGAAAAACAGGAGCGA AGACCGTTATTTCGTTTCGTCTGTTTTTCCATCTCCAACACACACCGCCG CCAAAACCTCGCCACAGCCCGAACCCATTGCCACCTAACTTCCTGTGGCC AATAGGAGCACACGATCCATCAAGTTTGATCGGCATCTGTGCCCTAGGGG TCGAGTTCTGGTTGGTGCTGTCGCATGATGTGTGCAACAGGGCTGTCTGC GGGTGGGGGGGGTAGTGGGGTTCTCTGGTTGGATTCTTGTAGGGGGGTCA AAACGCCAGGCCAAAATATCGTTGACCGTATGAAATAGCCTGAAGATCCG TCTGCACGACTGGTCATTCGACCTGCCCCGGCTGGTGAGGGGCCCCGCTG GAGGCGCCGAGTTTTACACGCGATCCAACAACGTTGCGTTACCTTAGACA ATGCCGACAGAAGATGACTACTCTGTAGCTGCCGCGTGCTTCCGTTGACG AAGCCACCAACAGAGTGACAAGCACCAGCAGTGTTTTTGATTCTCACATC AACTCATCGGCAAAATCTAGCCCGCGGCCACACAGCAGGCACATACCGTT GTAGGAGGAAATATGAACAAGAATAACACAGAAGAAATGAAGGCCTTGCA AAAAAGCAGGTGTATCGTACCGTCCGTAGGGGCGGTATCTTGTGTCGTGG CCAAAAATAAAAAACGTACATATGCATACAGAAATGCAGACTCGAAAGAA ACGAAAATTGAAAGAGTTAAAAATGCAAAGTCTTGTCCTTTGTGGGCAGT CACGGGGATCAGGGTATGCTCGAGTGGTCAGAACGACGTTGCGAACACAT GCACTACGAGTGCAACGGCTGTGGGCGCGGGCCGGCGCGGTCGACTGTGA GGCACAGAGGTCGAATCCGGCTAGTTCGGGATGCTGCTGCCGCTGGGCAT GCAGATATGGTTCTAGACTGTCCGGACTCATAATGGGTGGAACATTCGGA GGGCATTTTGCAGGCTTCTGTAAATTGGGAGCGGTCTAACGTGATTAATG CCTATGAGCAGAGAGGTCACTCGTGCACTACAAGTATGCCTTATGAGACT GCGTCAGTTCGGCTGAAGGCAGCTCCGGCTGCGGAAGGTACGATCCCAGT TATCATGGAAAAATTTGGCTCACAGGGTTTTTTGTGGATGGCATTACCTC CGTTTTTCTACACATGAGGAAAGTGGGGGAGGGAGATGGCTCGCTATCGT CATAGACTAGCGGTAGACTAGCGGTTGCGTGTGAGATTTATTTTGTTACT CGTACAAAGCCAGAGTATTTTTGTTCAACTTCGAAAGTATGTGCTTTCGT GTGTATTTTCGTCCCATATATTATGTGCACTAGCTTTTGCCTTTCTACTC AAATGTGAGCACCAACCAGCCGGGGTCACACAGAAGGGAGGTCGCACAGG ATTTTTTCTCTCCACCCCCCCCCCTCTGCGATTTTTACAAAAAACAAATG ATTGACTTTTAAGGAGGGAGGTCTTTTCGTTTCGCCGATTTAGGCCCACT TCGTTAGTGAGAAGTCCACCGAAGTTCATATGCTTCACCTGTCCTCCTCG TCGTCCGGGGGGATTTTAACGCACGTTTCATATTTACGAATATCGTCCTT TCCGCGACGCTGATTGGCCCACCAAGCGTCGAACCGCTATCTGGCGCCAG GCCCTGACGGTGTGTCGCATTTGAGTCTTCTCAGGTTGGCCGTCACGTGG AACCAGTTCCGCTTCTCTGGCGGAATGAGAGCACTGGGACATTTCCACGC CGTTCACACTCAAAACCCGTGAAGCTTTTGGACTTCACCACCATCAAAGC CACATCAATATTTCAGAAATTCCACCAAGTCGAACATGGAAGCCCTGTCA CGATTACATCCACCCTCGGCACGCTGTCTGAGTAAAACCCTCCCGCACGA CATGCTGGGCAGCAACGAGCGGCGCTCCCCGTGCTGCGATGCTGCGTGCT GCGTTACGTACCCAAAGGAACCACAACAAACTGAATGCAACATCGCAGCC AAAGAGTCGTTGCTGCCAACCGTACCGTGCGGAAGGGTCTTACCTATGTA CGCAGGCGACGGTACGGAGGGGATCTGAAATCGTGACGAGCCTTCCATGG TTGAGTTGGCGGAAAGTTTAATGCAGCTTTGATCGGTTGGGACGTTCACA AGTTGCGCGGCTTTTGGGTGCGAACGGCCTGTGTCCCGCGGGCGGTGCTC TCATTCCACCAGAAACCTGTACGACGCTGAGTGGGCCAATCAGTGTCGCG GAAGAGACCCACAGCAGTCGCACGGGTATTTTTGGCGTGTACCGCTTCAT GGCGCAGGAATCAGGCGGTACACCGCTCTCTGGCGTCCGCTCCTTTAAGA ACATCAAAGAAAGTTGGCACATTCTCTTGTACATTCTTTTCTGCCAGCCA TCTTCTTTTTTATATGCAGCTTCGTCCAACGTGAAATCGTACATTGCAGC AGTGAGTAGCAGAGCACGCGGAAGCTCCAAATGATAAACCCAAAGGCGGC AGAAATCGTACTTCGTGTGAAATCTTTGCTTCCGCATAAAAAAAACAGCG TCTATGACGTCTACAGCACGTACCAGTAGCAGCCCATGACTTGAAGGCAA AAGTCTGTCGTCTTCATACGGCACGAAAAACGGGGAATGACTCTAGGATG GAACACGATCGGCCGACCACGATTGTGCCCGCACGCCTCCGTATCAACTT GGATTCTACAGCCAGGGAGCGCGTTGTGCACGTCGGCGCGCAAGGGTAGC CGACGCGCTCTTGCGGTGAGGACGCGAGCAGGATCGTCGTCATCGTCGCC ATCCCCGTCATCGTTATCCTTGGCATCAGTTTCGTCTGCTGCTGGACGGG AGGATTCTGGTGCTGACATCGCCAAACCGAAGCGTGCAAAGCGGGTTTCA AATGCGAAAGGCGTCGGCGCCATCCCTGCCGGGACAAAAAAAAAGGCGTG CACTCTGGGGAGGTCGAGGGAGGATGTGAGTTTGCGCATTCTGCGGGGTT GAGTTGAAGCTCAGAATCAAGGGAGTAAGTAAAACTAGGAATTCTATCTA GACTTCACAGCAGTAGTCAATGCAATGTGGCGCTCATTGCAAGTACACTT CGTACGAAGTAGCTTGTACGAAGTACAGCCAGAAACGGAGTGTTGTGATT GTAGAAGTTCATTCCGGCAATAAGCATACTGTATGAACACCCTTTTCATT TGGATATGGTCTTCGCCTCGGAAGGTTATTGAACATGGTTTTCTGTACAT CTGTCGAATCGATCTCCGAATGGCTCGCGCTTGCTGTGTATCCACCGCCT GTTTGTCATACACCCATGTCGAACACAATAATTCGCTCTTTCGTGCTTGT ATGCCCACACCGACACAGAGGAAGCGTGGCGAGGGTTTTGCATTGGTGAT TGGCGTCGACGAAGCGGGGCGCGGGCCGTTTGCAGGTAATTTTCTAGCTT TGAGGAGAGGCGGGACAGCCGCGCAGATCAACTCCTGAGACGGAAGCTGT GCGCACACTTAGATGTTACGGACGCACTTGCTCACCGAAAACCTTCAGTG AGCACCGTGTTGGGAGTTCAACGGCAGGAATCCAGCACGGTCGGTGCACA CAAGGCACGTTGTCTGTTCACATGCTGCGGACGACGCCACAAACTAGACG GAAAGCGTTCTGCTCGATAGCAGCAGCTGCTTCTTAGGTTCAAACGCGCT TGATGTTTTCTTCTCCCCTTACTTCGTTTGACGTCAACGGATGTTTTATG GCAGGGCCGGTGGTCGCGGCGGCGTGCTTTGTTCCGCCAGACATCAACAT TCTCGGCATTCGGGATAGCAAAAAGGTACTCGACGACTGCCTAGTCATCG CGTTTTTACTGTAACGAAAGGCTTGCATGCCTTCGTATTGATTGGGTTGC GATGGCGATTTGTGATTGTATCTCTGCTAGCGCTGTGCCAGTCTGTTGTC GGCCTTGATGTTACTGTTGTCGCTTAGTTTTTTTTATCGCTGTTCGCGTT GTTGATATGCGGCGGGTGTTATTGATCGATGCCGTGTGCCGCGTGGCTTG TGCGATGTTGTGATGCAGTAGGTGCGACGATATCGAGTTGTGTCCAGCGG GTGTATTTTGCTGCCGAAGCTTGAAGGTTGCTTCACATGCAGAGCTGGAT AGATGTCATGCAAGCGAGAACCATCTACTTTTATTCCCCATCTTCGACAC AGCAGCGACTTTGCACTCAGCACACCAGAGTCCTGCTCACGGTTGATGAA GCTGCGTTCATCGGCAGCTTGGCGCCTTACGCTGCTCGATGGTCGTTTGC ATCCATTGCCACCGGCGTGCACAGAACGAGAGGCTCGGCACTGCAAGCCA CGCCAGGTCCATTTCAAACTTTGTTCCCAGGCGCGCTCCACACGCCGCCA AGAAATATTTCATACTCTACTGCTGTCTGCTGCCTATCGCTGCTGCAGGT TCCGCGGCATAGCGGTCGGGAGGCGCTGTACAAGGAGTTGACGGAGAGCC CAGGCGTAATTTGGGCCACCTCGGAGGTCGGGAGCCGCCGCATCGACGAA ATCAACATTCTCGAGGCCACTAAGGAGGCTATGACGGTGAGTTTGTATTT GGTTACCCTTTCCTTTTTTTTATTTCCCGGTAGACTTTATCTGTGCCGTC GGGTCGACGCCTATTAATGGTTTCTTGTTTGCTGCTTGCTTGCTTCGTTT CGCCACCAAGATGGCCATCCTCGACGTGAAGGGTCGGAGGTTGGGCTGCG TGTCTTTTCCGCTGGTGCAAGTCCCTTGCTTTCTTTCGTCTTATTTCGTT TGGCGCATGTGCCGATTAAAGCCTGTTTTTTTATCTTCAGTTTATCCTGT TTTCCTTCGTTAGCGTCCTCGATACCGTCGCAGAGGTCTTGCCGCCCAGT CAGGAAGTGACATGCGCCGAATACATCAATTTCCCTTCCCCGCAAAGTCT CAATACAATGCCCCCTCGCGTACATCTTATTCGTCGTGAACGTGTACTGT ACCACATGTGGGTCCACAGGAGTGCGCGTTTGAGGTTATCTCAAAAGCTT CCAAGGCCAAAAGCAAGAAGGCCAAAAGCAAGAAGGCCAAAAGCAAGAAG GCCAAGGGTTCGAAACCACCGAAGCCGTTTGTGCTGGTCGACGGTAACTT CACGCCTCCGGGGCTAGCGAAGATGGACTCCGAGTTCGTCGTCGGAGGGG ACGGTCTAGAGTACTGCATAGCCGCCGCTAGCATCATAGCGAAAGTCACT CGAGACCGGCTCATGGTGAGCGAAAGGTACAACAAGTAGAACCGCTCAAA TTGGTCTGAGCGGGTGGGTGGGTGGGTTGGGGGTGTGGGCGTCAAGCTCG GAATGGCTTCGGGCGAAGGGGGATGTTGGTCAAAATCGTTCTGTGTATCA TCGCACAGTCAACCGCAGCACGCTGCCTTGAGGAACCCTTGGAACTTGCG CCAGATCGGATGGAGGGGATACGTGCATAGGACGTTCAACAGCTCAGACA CACCCCGGTATTATGGTGTGGACGGGCGAGGACCATTCCTGCTGCTGATT CCCAAAGATGGCAGTAGCACCGCGTCTTGACTTTGCTTCAGCACGCGGGT TCGTGGACGGTGTGTGGTGTTAAAACCAACAAATTGATCATCATGTCCAT CTCCAAAGCGCAAAACATGTTCCCGATTTCGTTTTTCGTACGAAGGTATC ATGTTTGCGGAAGCAATCATGTTTTAGAGCACATGTTTCATTACATGATG TTTTGTTCCCTTTTTGTGCCCAGATCGAGTTCGGGGAACGCTGGCCCATG TACGGATTCGAGAGGCACAAGGGCTACGCGACGAGCGCGCACCGCGATGC CATTCGCGAGCACGGCATGGTGGAAATTCACCGCCGGAGCTTTCTGAAAA AGATGGAGGCTTCAGGAGGGAAACTATCCGAGCACAAGGGCTAGCGAAAG AAGCTGATGATGCAGCCTTCGTGCCGAGAGGCACATGAGTCAAAATCAAC CCGTTCTCTTGCACGCCGCCGAAGCTTGCTTGAAGAAACTACGGAACTCA GCAGCAGAGGAGACTGGCAAACTGCGGCGGCAGGAGCGGTTCTGATACAT CTAAATGCCACGGATGGGCGATCAACCGCTTGCGAGCAAGGCGGATGCAC TGCCGATTTTAAGTAAACGGAGGTTTCCAGTGGCAAGTTTAACAAGTATT CTCAGAGAAGTGGGAATAAATGCTGGAATGCGAAAATGGCACTCGGCGTG CTTTACTCCTTGGGGTATTCCAGGATATTGTATTTTCATTGATTTTTGCG TCATTTCATTTCCCGAAGTATTTTGTTCGCAGGGCCATGTGAAACGCACG TTCGTATTGACCTGGTAATTTCATCAGGTATGGGCGAACCGTCTCGACTA CAGCAGTAGCTTCTCTCAGTGCGATGCGTTTACTTGAACTCTGAAGGATG CCGTTGAGTGATTATTCTTCTCCGCGTTGTTGATTTAGTTGCTGCTTTTC AAAAGCGGATTCCCCGGCGAGGACACAGGCAAGAGTTGCCCAATCTCGAG TTTATGGCTTAACATGCCACAGCCTCAACCCTCCATAAGGCACCAGTATT CGGCTGGAGGCTCCGTTTCCTTTTTGGTTTGAACTATGGGGACCCTCCCA TAGTTGGCTCTCCCTCCGAATTCGTTGAGCTTTCTGAGCGCACGCTCGCC AAGGTTTTGCGCTGGTGAGTCCAAAGCGGCTCAGCGTACGTACGTATTCG GGACAACAGGCCCGCCCCCATCTGGACTACATCCTTATTGTCACTTTCGA AGAGATTAATTCGAAGAATAGCTTTTTTACTTCGAATATACACACGAAAC TACTACTTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig164:107041..115500+

>mRNA_P-littoralis_Contig164.19.3 ID=mRNA_P-littoralis_Contig164.19.3|Name=mRNA_P-littoralis_Contig164.19.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1116bp|location=Sequence derived from alignment at P-littoralis_Contig164:107041..115500+ (Pylaiella littoralis U1_48)
ATGCGCCTCGTAGTTGCCTCGGCATCGGGCCTTCTTGCGATGGGTATTAA
AAAAGCGGCATCCACAACGGCAATATCCACCGCCTTCAGACGTTCTCCGC
GCCTGGCGGCGGAGGCACACCGACGCCACCGCAGCAGCAGCGGAGCCTTT
GCAGCAGGGCCAGGGAGCGCGTTGTGCACGTCGGCGCGCAAGGGTAGCCG
ACGCGCTCTTGCGGTGAGGACGCGAGCAGGATCGTCGTCATCGTCGCCAT
CCCCGTCATCGTTATCCTTGGCATCAGTTTCGTCTGCTGCTGGACGGGAG
GATTCTGGTGCTGACATCGCCAAACCGAAGCGTGCAAAGCGGGTTTCAAA
TGCGAAAGGCGTCGGCGCCATCCCTGCCGGGACAAAAAAAAAGGCGTGCA
CTCTGGGGAGGTCGAGGGAGGATAGGAAGCGTGGCGAGGGTTTTGCATTG
GTGATTGGCGTCGACGAAGCGGGGCGCGGGCCGTTTGCAGGGCCGGTGGT
CGCGGCGGCGTGCTTTGTTCCGCCAGACATCAACATTCTCGGCATTCGGG
ATAGCAAAAAGGTTCCGCGGCATAGCGGTCGGGAGGCGCTGTACAAGGAG
TTGACGGAGAGCCCAGGCGTAATTTGGGCCACCTCGGAGGTCGGGAGCCG
CCGCATCGACGAAATCAACATTCTCGAGGCCACTAAGGAGGCTATGACGG
AGTGCGCGTTTGAGGTTATCTCAAAAGCTTCCAAGGCCAAAAGCAAGAAG
GCCAAAAGCAAGAAGGCCAAAAGCAAGAAGGCCAAGGGTTCGAAACCACC
GAAGCCGTTTGTGCTGGTCGACGGTAACTTCACGCCTCCGGGGCTAGCGA
AGATGGACTCCGAGTTCGTCGTCGGAGGGGACGGTCTAGAGTACTGCATA
GCCGCCGCTAGCATCATAGCGAAAGTCACTCGAGACCGGCTCATGATCGA
GTTCGGGGAACGCTGGCCCATGTACGGATTCGAGAGGCACAAGGGCTACG
CGACGAGCGCGCACCGCGATGCCATTCGCGAGCACGGCATGGTGGAAATT
CACCGCCGGAGCTTTCTGAAAAAGATGGAGGCTTCAGGAGGGAAACTATC
CGAGCACAAGGGCTAG
back to top