mRNA_P-littoralis_Contig164.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.62.1
Unique NamemRNA_P-littoralis_Contig164.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:313570..315485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size386
Hectar predicted targeting categoryother localisation
Exons2
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789790.6318552-CDS-P-littoralis_Contig164:313569..3137041680789790.6318552-CDS-P-littoralis_Contig164:313569..313704Pylaiella littoralis U1_48CDSP-littoralis_Contig164 313570..313704 +
1680789790.6425457-CDS-P-littoralis_Contig164:315235..3154841680789790.6425457-CDS-P-littoralis_Contig164:315235..315484Pylaiella littoralis U1_48CDSP-littoralis_Contig164 315236..315484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.62.1prot_P-littoralis_Contig164.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 313570..315484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.62.1

>prot_P-littoralis_Contig164.62.1 ID=prot_P-littoralis_Contig164.62.1|Name=mRNA_P-littoralis_Contig164.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
RRLLQAALEPSIRCGLGGVRSVLLCFSTGEASPAPTAAVGGWGAKDKVKL
PGDDASERLSLLLSWRSSDSFSSIPSESLPEISATSGSPASVATTGLAIS
APPPLPPVVAGLFMAAEKSRGHSQRQRK
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mRNA from alignment at P-littoralis_Contig164:313570..315485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.62.1 ID=mRNA_P-littoralis_Contig164.62.1|Name=mRNA_P-littoralis_Contig164.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1916bp|location=Sequence derived from alignment at P-littoralis_Contig164:313570..315485+ (Pylaiella littoralis U1_48)
CGTAGGTTGTTGCAAGCCGCGCTGGAGCCAAGTATTCGTTGTGGTCTTGG
TGGCGTGAGATCGGTCTTGCTTTGCTTCTCCACCGGCGAGGCTTCACCTG
CGCCAACCGCCGCGGTGGGGGGATGGGGAGCCAAGGCAAGTATCGTTGGA
ACACCGCAATCAACACGTGAAACTCGGCCGGCTTCTTTTTCGGTACATGC
TGAGTACCTTTATCTACTCAGAAGTACAAAGTTGAAGTAGAACTTGTTCA
CATGTCAACTTACTGCAGTAGTAGATGGAGTATTTTTGTGGCACTTTGAA
GACGCGGCAACATGTCAACGTGTTTCTCAAACAACATGAAACTCGTAGCT
TAGTAAATTTGACCGTATTTTTGAAAGGATATTGGAGATGATATAGTTTG
AGGTATCACAATTGAAATTCCACGCCCAGTCAGACCACCAGAATTAACTA
CACACCTCACAGGTAGTCACTGGGACACGTGATGGCAGCTTATCATTTTT
TACAACGTAGAGAGGTTGTCAAGGGTTGTGGGGTGGTTGTGGGAGGACGG
AATCGATCTGAAACCTTTTCTTCTGTGCTGCCAGCCCGCCCTGTTGGTTG
CATCAAAAATATTAGTACTAATATTGTTGGCCCCAAAGAAAAAATATGGG
TTCAGGTCGATTCCGTCCTCGTATAACCACCCCCAACCTTTCACAACCTT
CCTAGGTCGGGCCATATGCATAACCTGCGACAACGTGTCCCAGTGGCCAC
CTTTGCTTCGGGACGGGGCAAGATGAGATTTTGCACGCATGCGCCGATTG
CCCTGTAGCTCACATGCCACTAATTGCGCGATGAAACAAATACGTCCGCA
TCAACCTGCCTTTTCCGTATCGCCCAAACGCCCTGCTTTATACGGAAACT
CTTGTTTTCCTGGATGGGGCTGATAACGCCCAATCCACCCGCCGAAACCA
TTCTCACATCCTCGCATACACGCAATATTCCGCCTGTACATAATACTTCG
TACACAGGAAAGCTGGTAGGCTAGAACTTTTTGGGGCTACCCATCTGTAC
ATTCAAACTTCAAAAAATGATCACTCTTGTCCTAAGAGCCCGAAGGCATG
AAGAGAGACAACCCTGAAGACGACAACGAAACACCCGTCATCAGTCCTTC
GCCAAAAGCGGTGAAATAAACGTCAAATGCGCGTCCATAGAACTCGCCCC
CCATCCCTTTCGTCCCCACCGTGCTCGTTTCCTACATATTCTCGCAATCC
CGGGGGCCAATCCCACCAGCCCATCGCCGAACGGATTATCTAAACGGGTG
GCCTCGCCCCATTCCGCCAACTGGCATCATCCGCGATGTGGTCTGTTGAT
CCGTCGAAACAGAGGCAGCAGCAAGACGCGTGCAGAAGCCAGTAAAACTA
ACTGTTGTTGACAAACAATCTGGACAGTGTTGCGCCTGCACGCGTAGGAT
ATAGTACGGACATGTAGATTGAAATCAAAACGGAAAACACCCATTGTGAC
ACACACACGCGAGCACACGCGAGCACACGCACACGCACACGCACACACAG
ACCCTATCTATCTCTCACACATTCACACACCTGCCGCGGCACAACTGCCT
TTTAAGCTCCATGCGCCGCCCATCAGATCTGAATCATCCGATTTTCCCCC
GTACCCATCTCCCCAGGACAAGGTCAAACTCCCCGGAGACGACGCCTCCG
AGCGTCTGTCGCTGTTGCTATCGTGGCGCTCATCCGACTCCTTCTCTTCG
ATTCCGTCGGAGTCACTGCCAGAAATATCTGCCACCTCTGGTTCGCCGGC
CTCCGTAGCGACTACTGGACTTGCAATCTCCGCACCCCCCCCACTACCAC
CGGTCGTAGCCGGCCTGTTCATGGCGGCGGAAAAATCGCGAGGGCATTCG
CAACGGCAGAGGAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig164:313570..315485+

>mRNA_P-littoralis_Contig164.62.1 ID=mRNA_P-littoralis_Contig164.62.1|Name=mRNA_P-littoralis_Contig164.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig164:313570..315485+ (Pylaiella littoralis U1_48)
CGTAGGTTGTTGCAAGCCGCGCTGGAGCCAAGTATTCGTTGTGGTCTTGG
TGGCGTGAGATCGGTCTTGCTTTGCTTCTCCACCGGCGAGGCTTCACCTG
CGCCAACCGCCGCGGTGGGGGGATGGGGAGCCAAGGACAAGGTCAAACTC
CCCGGAGACGACGCCTCCGAGCGTCTGTCGCTGTTGCTATCGTGGCGCTC
ATCCGACTCCTTCTCTTCGATTCCGTCGGAGTCACTGCCAGAAATATCTG
CCACCTCTGGTTCGCCGGCCTCCGTAGCGACTACTGGACTTGCAATCTCC
GCACCCCCCCCACTACCACCGGTCGTAGCCGGCCTGTTCATGGCGGCGGA
AAAATCGCGAGGGCATTCGCAACGGCAGAGGAAA
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