mRNA_P-littoralis_Contig1631.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1631.2.1
Unique NamemRNA_P-littoralis_Contig1631.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: A0A2D8LMF0_9FLAO (Signal peptidase I n=3 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8LMF0_9FLAO)

HSP 1 Score: 266 bits (681), Expect = 2.130e-87
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 3
Query:  276 KKGIVHVNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDANTTSDSLFVFLPDASANLGEAIRVKSHYSEKDAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASLKLN 680
            KKGIV+VNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDAN  SDSLFVFLPDASANL EAIRVKSHYSEKDAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASLKLN
Sbjct:   93 KKGIVYVNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDANMASDSLFVFLPDASANLEEAIRVKSHYSEKDAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASLKLN 227          
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: A0A3L9YVZ3_9FLAO (Signal peptidase I n=1 Tax=Ulvibacter antarcticus TaxID=442714 RepID=A0A3L9YVZ3_9FLAO)

HSP 1 Score: 112 bits (280), Expect = 5.260e-27
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  270 RNKKGIVHVNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDANTTSDSLFVFLPDASANLGEAIRVKSHYSEKDAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASLKLN 680
            R K     +NS NVD+ L LKH Y +   ++++   +  PD   YQ+A  T DS  V L D+ A   +  R     SE + ++ + Y A WN + FGPL+IP NK+FVMGDNRDNAMDSR+IGLID+  ++  ++ N
Sbjct:   90 RIKNSTTFINSSNVDSSLNLKHAYFISEKQMNNV--MDNPD---YQEAYLTQDSYLVHLKDSIAAKNDYKRNLMKVSEPNPIVSKVYNANWNANFFGPLVIPENKIFVMGDNRDNAMDSRYIGLIDEEEIIGVVRTN 221          
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: UPI0006293849 (signal peptidase I n=1 Tax=Kordia jejudonensis TaxID=1348245 RepID=UPI0006293849)

HSP 1 Score: 100 bits (250), Expect = 1.640e-22
Identity = 60/134 (44.78%), Postives = 81/134 (60.45%), Query Frame = 3
Query:  276 KKGIVHVNSQNVDAHLTLKHLY---RVHFDEISSYEHLLTPDDYMYQDANTTSDSLFVFLPDASANLGEAIRVKSHYSEK---DAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASV 659
            KKGIV+VN +NVDA L LKH Y   +  FD++ +      P D      N   D+  VFL DA A    A+  K    +K   +  I+E+Y   WNKD+FGPL+IP  K+FV+GDNRD+A DSR IGLI+ +++
Sbjct:   96 KKGIVYVNGKNVDAQLELKHSYLLSQAQFDKLEN-----PPLDAF----NINEDTKMVFLEDAIAKK-YALENKQFIEDKGIENDFIKEKYQQNWNKDHFGPLVIPEGKIFVLGDNRDDARDSRTIGLINASAI 219          
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: UPI000A202DC6 (signal peptidase I n=1 Tax=Nonlabens tegetincola TaxID=323273 RepID=UPI000A202DC6)

HSP 1 Score: 98.2 bits (243), Expect = 1.530e-21
Identity = 51/134 (38.06%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  276 KKGIVHVNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDANTTSDSLFVFLPDASANLGEAIRVKSHYSEKDAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASLKL 677
            K G++ VN  NVD +L LKH Y+  F++++  +  +  ++Y Y   N   DS+ + L +  A     +  + +  E D  IQ+ Y   WN+DNFGPLIIP +  FV+GDNR+ +MDSRF+GL+   ++   L L
Sbjct:   91 KNGVLFVNGTNVDQNLKLKHSYKTSFNKLNEIKEKIEINEYNYYPIN--KDSIIIQLTEKEAKKFAVVN-RFYKMEIDNEIQKIYKKEWNEDNFGPLIIPKDYFFVLGDNRNYSMDSRFLGLVPTKNLKGKLIL 221          
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: A0A504JBX3_9FLAO (Signal peptidase I n=1 Tax=Aquimarina algicola TaxID=2589995 RepID=A0A504JBX3_9FLAO)

HSP 1 Score: 97.1 bits (240), Expect = 4.480e-21
Identity = 52/137 (37.96%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  276 KKGIVHVNSQNVDAHLTLKHLYRVHFDEISSY--EHLLTPDDYMYQDANTTSDSLFVFLPDASAN---LGEAIRVKSHYSEKDAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASL 671
            K G++++N +N+D  + LKH Y +  DE      + L+   D  Y+    T D +F+FL +  A    L   I+++   +  D  I ++Y   WN+DNFGPL IP  K FV+GDNR N+ DSR+IGLI+K  +V ++
Sbjct:   91 KDGVLYLNKKNIDKSMALKHFYILDPDEFQKLLDKELIEEKDIAYR----TKDKIFIFLINKIAQKHGLSSKIQIEPK-NRTDKKIVKKYNKNWNRDNFGPLKIPEGKCFVIGDNRHNSEDSRYIGLINKLDIVGTV 222          
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: A0A5B9FWQ7_9FLAO (Signal peptidase I n=2 Tax=Flavobacterium TaxID=237 RepID=A0A5B9FWQ7_9FLAO)

HSP 1 Score: 96.3 bits (238), Expect = 7.890e-21
Identity = 55/137 (40.15%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  276 KKGIVHVNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDANTTSDSLFVFLPDASANLGEAIRVKSHYSEK-----DAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASL 671
            + G++  N  N D    L+H Y +  +EI          DY  Q A     +    +  A   +    + K  +  K     D  I E +G  WNKDNFGP+IIP NKLFVMGDNRDNAMDSR+IGLIDK  + A++
Sbjct:   86 RDGVLFRNGINFDKDYNLQHNYLIDIEEIKKLPE--NEKDYFSQKAYPALLNNKYLITSAEDRI--MYKAKFPFKRKLDSIPDKFIVETFGKNWNKDNFGPIIIPVNKLFVMGDNRDNAMDSRYIGLIDKRDIKATI 218          
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: UPI00164A6676 (signal peptidase I n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=UPI00164A6676)

HSP 1 Score: 95.1 bits (235), Expect = 2.520e-20
Identity = 50/134 (37.31%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  276 KKGIVHVNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDANTTSDSLFVFLPD--ASANLGEAIRVKSHYSEKDAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASL 671
            KKG + +N +N D      H Y +  +E    +  L PD           DS+ + L D  A AN  E  R  ++  ++++++Q+ +   WN DNFGPL IP+NK+FV+GDNRD A D+RF+G IDK+ +V ++
Sbjct:   91 KKGTLFINGKNADKGTDFVHFYVLTEEEFQKSKTGLKPDLTFISRVGENKDSIMIPLSDQYAKANGLELRRRIANEVDENSIVQKIFNENWNLDNFGPLKIPSNKVFVLGDNRDIAEDTRFVGFIDKSDIVGTV 224          
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: UPI0012BBF1C5 (signal peptidase I n=1 Tax=Fulvivirga kasyanovii TaxID=396812 RepID=UPI0012BBF1C5)

HSP 1 Score: 94.7 bits (234), Expect = 3.990e-20
Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  276 KKGIVHVNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDANTTSDSLFVFLPDASANLGEAIRVKSHYSEKDAM-----------IQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASL 671
            + G+V VN+QN+D ++ L H+Y +  D+   Y+ LL       +      D L  +L + S+ +  +  +       D M           I+E Y   WN++NFGPL IP  K FV+GDNRDNA+DSR+IGLID+A ++ ++
Sbjct:   95 RSGVVFVNNQNIDENMELNHVYVIKHDK---YKQLL-------KKGELDKDGLMAYLNEDSSLVCMSTEIAKRNGLSDRMYIDPENKAEKEIKEVYQQNWNRNNFGPLEIPEGKYFVLGDNRDNALDSRYIGLIDEARIIGTV 227          
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: A0A7L4ZJR1_9FLAO (Signal peptidase I n=1 Tax=Kordia antarctica TaxID=1218801 RepID=A0A7L4ZJR1_9FLAO)

HSP 1 Score: 92.8 bits (229), Expect = 1.770e-19
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  276 KKGIVHVNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDANTTSDSLFVFLPDASANLGEAIRVKSHYSEK--DAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVV 662
            +  ++ VN +N D H  L+H Y +   ++ + + L        ++   + D   VF+ D  A      + +  +S+   D +I+EQY   WNKD+FGPLIIP  K+FV+GDNRDN+ DSR  GL D  +++
Sbjct:   92 RNSVLFVNGENFDKHFNLQHTYVLSQAQLDNMKQL------SLENFRISEDKFMVFIQDVDAKKYALEKYRFIHSKDKIDQVIKEQYNQNWNKDHFGPLIIPKGKIFVLGDNRDNSQDSRHTGLRDATAII 216          
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Match: A0A345GUN1_9FLAO (Signal peptidase I n=1 Tax=Kordia sp. SMS9 TaxID=2282170 RepID=A0A345GUN1_9FLAO)

HSP 1 Score: 91.7 bits (226), Expect = 5.810e-19
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  276 KKGIVHVNSQNVDAHLTLKHLYRVHFDEISSYEHLLTPDDYMYQDANTTSDSLFVFLPDASANLGE--AIRVKSHYSEKDAMIQEQYGARWNKDNFGPLIIPTNKLFVMGDNRDNAMDSRFIGLIDKASVVASL 671
            + G + +N +NVDA   LKH Y +  ++ +S +  +T  DYM    N        ++ D  A   +  A R     +  D  I+E Y   WNK++FGPLIIP  K+FV+GDNRD + DSR  GLID+ ++   L
Sbjct:   91 RNGTLFINGKNVDATYNLKHAYILSEEKFNSLDETVTGKDYMII-PNEGKQGYLTYIEDKDAEKLQLKAYRFLDDKTNSDPKIKEIYQNDWNKNHFGPLIIPEGKIFVLGDNRDYSQDSRSYGLIDQEAITGVL 223          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1631.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LMF0_9FLAO2.130e-8797.04Signal peptidase I n=3 Tax=Flavobacteriaceae bacte... [more]
A0A3L9YVZ3_9FLAO5.260e-2743.07Signal peptidase I n=1 Tax=Ulvibacter antarcticus ... [more]
UPI00062938491.640e-2244.78signal peptidase I n=1 Tax=Kordia jejudonensis Tax... [more]
UPI000A202DC61.530e-2138.06signal peptidase I n=1 Tax=Nonlabens tegetincola T... [more]
A0A504JBX3_9FLAO4.480e-2137.96Signal peptidase I n=1 Tax=Aquimarina algicola Tax... [more]
A0A5B9FWQ7_9FLAO7.890e-2140.15Signal peptidase I n=2 Tax=Flavobacterium TaxID=23... [more]
UPI00164A66762.520e-2037.31signal peptidase I n=2 Tax=Flavobacteriaceae TaxID... [more]
UPI0012BBF1C53.990e-2035.66signal peptidase I n=1 Tax=Fulvivirga kasyanovii T... [more]
A0A7L4ZJR1_9FLAO1.770e-1935.11Signal peptidase I n=1 Tax=Kordia antarctica TaxID... [more]
A0A345GUN1_9FLAO5.810e-1937.31Signal peptidase I n=1 Tax=Kordia sp. SMS9 TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1631contigP-littoralis_Contig1631:649..1328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1159488.SEQMU2_02725
Preferred namespsB
PFAMsPeptidase_S24
Model size680
Max annot lvl91061|Bacilli
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
Hectar predicted targeting categorysignal anchor
Exons1
Evalue5.99e-06
EggNOG OGsCOG0681@1|root,COG0681@2|Bacteria,1V2BJ@1239|Firmicutes,4HGCB@91061|Bacilli,4GYG4@90964|Staphylococcaceae
EC3.4.21.89
DescriptionBelongs to the peptidase S26 family
Cds size297
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789789.7293675-UTR-P-littoralis_Contig1631:648..10311680789789.7293675-UTR-P-littoralis_Contig1631:648..1031Pylaiella littoralis U1_48UTRP-littoralis_Contig1631 649..1031 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789789.7566366-CDS-P-littoralis_Contig1631:1031..13281680789789.7566366-CDS-P-littoralis_Contig1631:1031..1328Pylaiella littoralis U1_48CDSP-littoralis_Contig1631 1032..1328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1631.2.1prot_P-littoralis_Contig1631.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1631 1032..1328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1631.2.1

>prot_P-littoralis_Contig1631.2.1 ID=prot_P-littoralis_Contig1631.2.1|Name=mRNA_P-littoralis_Contig1631.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MKRTHIILLIIGVVGVIGFIYFMTVQQVAKPYIMSSTANEPTLPIGTQVM
ASNLWEYKNGSFIVFSEKDPFSNQEYEYIFRLIASEGDTLEIKKGLYM*
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mRNA from alignment at P-littoralis_Contig1631:649..1328-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1631.2.1 ID=mRNA_P-littoralis_Contig1631.2.1|Name=mRNA_P-littoralis_Contig1631.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=680bp|location=Sequence derived from alignment at P-littoralis_Contig1631:649..1328- (Pylaiella littoralis U1_48)
ATGAAGCGAACCCATATCATACTTCTCATTATTGGCGTGGTTGGCGTTAT AGGTTTTATTTATTTTATGACCGTTCAACAAGTGGCCAAGCCTTATATTA TGAGTTCAACTGCCAATGAACCCACGTTGCCAATTGGCACTCAGGTCATG GCTTCCAACCTTTGGGAATACAAGAATGGGAGTTTTATCGTATTTTCTGA AAAAGACCCTTTTTCTAACCAAGAATACGAGTATATTTTTAGACTGATCG CTTCAGAAGGTGATACCCTCGAAATAAAAAAGGGATTGTACATGTGAATT CTCAAAATGTAGATGCGCACCTTACGCTAAAACACTTATATCGTGTGCAT TTTGATGAAATTTCCTCGTATGAGCATCTTTTAACGCCCGACGATTACAT GTATCAAGATGCTAATACGACCTCAGATTCGTTATTTGTGTTCTTGCCAG ATGCTTCGGCTAATTTAGGAGAAGCTATCAGGGTAAAAAGTCATTATTCG GAAAAAGATGCTATGATACAAGAGCAATACGGTGCCCGATGGAACAAAGA CAATTTTGGACCCCTCATTATTCCGACGAATAAATTATTTGTGATGGGTG ATAACCGAGATAATGCGATGGATTCCAGGTTTATCGGACTCATAGATAAA GCAAGTGTTGTGGCCAGCTTGAAATTAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1631:649..1328-

>mRNA_P-littoralis_Contig1631.2.1 ID=mRNA_P-littoralis_Contig1631.2.1|Name=mRNA_P-littoralis_Contig1631.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1631:649..1328- (Pylaiella littoralis U1_48)
ATGAAGCGAACCCATATCATACTTCTCATTATTGGCGTGGTTGGCGTTAT
AGGTTTTATTTATTTTATGACCGTTCAACAAGTGGCCAAGCCTTATATTA
TGAGTTCAACTGCCAATGAACCCACGTTGCCAATTGGCACTCAGGTCATG
GCTTCCAACCTTTGGGAATACAAGAATGGGAGTTTTATCGTATTTTCTGA
AAAAGACCCTTTTTCTAACCAAGAATACGAGTATATTTTTAGACTGATCG
CTTCAGAAGGTGATACCCTCGAAATAAAAAAGGGATTGTACATGTGA
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