mRNA_P-littoralis_Contig163.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig163.55.1
Unique NamemRNA_P-littoralis_Contig163.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig163.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig163contigP-littoralis_Contig163:415019..415487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_000180.1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789789.1035404-CDS-P-littoralis_Contig163:415018..4151861680789789.1035404-CDS-P-littoralis_Contig163:415018..415186Pylaiella littoralis U1_48CDSP-littoralis_Contig163 415019..415186 -
1680789789.1171677-CDS-P-littoralis_Contig163:415349..4154871680789789.1171677-CDS-P-littoralis_Contig163:415349..415487Pylaiella littoralis U1_48CDSP-littoralis_Contig163 415350..415487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig163.55.1prot_P-littoralis_Contig163.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig163 415019..415487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig163.55.1

>prot_P-littoralis_Contig163.55.1 ID=prot_P-littoralis_Contig163.55.1|Name=mRNA_P-littoralis_Contig163.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
SRHVLQDWDVWLSEKDSKGNDVNLHLENIYLDELQEDGLLLYERIKNKFK
NPLAEPEQFYLQYKLSSEQYPINIELSKRAQTLAAFKKFAALEQVSCLLF
V*
back to top

mRNA from alignment at P-littoralis_Contig163:415019..415487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig163.55.1 ID=mRNA_P-littoralis_Contig163.55.1|Name=mRNA_P-littoralis_Contig163.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=469bp|location=Sequence derived from alignment at P-littoralis_Contig163:415019..415487- (Pylaiella littoralis U1_48)
TCCAGACATGTCCTCCAAGATTGGGACGTGTGGCTTTCAGAGAAGGACAG
CAAGGGCAACGACGTCAATCTTCACCTCGAAAACATCTACTTGGATGAGC
TGCAAGAGGACGGACTGCTCCTCTACGAAAGGATCAAGGTACTGCGTGAG
GCCTTGCTTGATTTTTTCCCGAGGAATGTCGAGGTCCTCGCCCTGACAAT
CGTCATCAACGATAATGTCGTTCGAATGCGAGCCATTTACACCTGGCATA
TTCGTGTGGTGGCCCCTGCTTCTTCATGCCGTTGGGATGTCGCGCGTGCA
GAATAAGTTCAAGAATCCCTTGGCGGAACCGGAGCAATTCTATCTCCAGT
ACAAGCTCTCGTCCGAACAGTACCCCATCAACATCGAGCTTTCAAAAAGG
GCACAAACCCTGGCCGCCTTCAAGAAGTTCGCGGCGTTAGAACAGGTATC
ATGCCTGCTCTTTGTGTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig163:415019..415487-

>mRNA_P-littoralis_Contig163.55.1 ID=mRNA_P-littoralis_Contig163.55.1|Name=mRNA_P-littoralis_Contig163.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig163:415019..415487- (Pylaiella littoralis U1_48)
TCCAGACATGTCCTCCAAGATTGGGACGTGTGGCTTTCAGAGAAGGACAG
CAAGGGCAACGACGTCAATCTTCACCTCGAAAACATCTACTTGGATGAGC
TGCAAGAGGACGGACTGCTCCTCTACGAAAGGATCAAGAATAAGTTCAAG
AATCCCTTGGCGGAACCGGAGCAATTCTATCTCCAGTACAAGCTCTCGTC
CGAACAGTACCCCATCAACATCGAGCTTTCAAAAAGGGCACAAACCCTGG
CCGCCTTCAAGAAGTTCGCGGCGTTAGAACAGGTATCATGCCTGCTCTTT
GTGTAG
back to top