mRNA_P-littoralis_Contig163.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig163.41.1
Unique NamemRNA_P-littoralis_Contig163.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig163.41.1 vs. uniprot
Match: D7FNB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB4_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 2.120e-72
Identity = 124/194 (63.92%), Postives = 151/194 (77.84%), Query Frame = 1 
Query:   61 TGQKISSSNHELYHKALRFTSLYVYLGVAQGTLLVAAALYVSGAPLGLLLGLQDAPPQRQVEEMNAEEGGSAKEVWVQSGALSLATAGAMGLLNGFMVQRCCRWDRSKTCVVTNWHDLLKYTHMGRTITAAMTTVLTWRGLNSLKDFKTPEGGVGLIPKVLIGAAFVSMATVAFMHFLYFRVKAVYGEICELQR 642
            T  K+S+SNH+LYH+ALRFT++YVYL VA  TLL+AAAL++SG P+GL+LGL D P ++      +E GG      V+SGALSLATAG MGLL G MV+ CCR+D+S  CVVTNWHDLLKYTHMGRTITAAM  VLTWRGL SLKDF+ PEGGVGL+P VLI AA +S+A  A M+FL+FR+K V  E  +L+R
Sbjct:    5 TAHKVSASNHKLYHEALRFTTIYVYLDVAYATLLLAAALHLSGVPVGLILGL-DVPLKK------SEAGGEGG--LVRSGALSLATAGVMGLLVGVMVRGCCRFDKSHGCVVTNWHDLLKYTHMGRTITAAMCAVLTWRGLGSLKDFQIPEGGVGLVPAVLIAAAVLSLAAAASMNFLHFRMKGVLTEYAKLKR 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig163.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNB4_ECTSI2.120e-7263.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig163contigP-littoralis_Contig163:320097..323639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1187
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_000130.1
Cds size609
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig163.41.1prot_P-littoralis_Contig163.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig163 320148..323112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789788.258634-UTR-P-littoralis_Contig163:320096..3201471680789788.258634-UTR-P-littoralis_Contig163:320096..320147Pylaiella littoralis U1_48UTRP-littoralis_Contig163 320097..320147 +
1680789788.3143706-UTR-P-littoralis_Contig163:323112..3236391680789788.3143706-UTR-P-littoralis_Contig163:323112..323639Pylaiella littoralis U1_48UTRP-littoralis_Contig163 323113..323639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789788.2729087-CDS-P-littoralis_Contig163:320147..3204471680789788.2729087-CDS-P-littoralis_Contig163:320147..320447Pylaiella littoralis U1_48CDSP-littoralis_Contig163 320148..320447 +
1680789788.2820241-CDS-P-littoralis_Contig163:320863..3209741680789788.2820241-CDS-P-littoralis_Contig163:320863..320974Pylaiella littoralis U1_48CDSP-littoralis_Contig163 320864..320974 +
1680789788.2907608-CDS-P-littoralis_Contig163:321581..3217221680789788.2907608-CDS-P-littoralis_Contig163:321581..321722Pylaiella littoralis U1_48CDSP-littoralis_Contig163 321582..321722 +
1680789788.3048413-CDS-P-littoralis_Contig163:323055..3231121680789788.3048413-CDS-P-littoralis_Contig163:323055..323112Pylaiella littoralis U1_48CDSP-littoralis_Contig163 323056..323112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig163.41.1

>prot_P-littoralis_Contig163.41.1 ID=prot_P-littoralis_Contig163.41.1|Name=mRNA_P-littoralis_Contig163.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=203bp
MSPTGQKISSSNHELYHKALRFTSLYVYLGVAQGTLLVAAALYVSGAPLG
LLLGLQDAPPQRQVEEMNAEEGGSAKEVWVQSGALSLATAGAMGLLNGFM
VQRCCRWDRSKTCVVTNWHDLLKYTHMGRTITAAMTTVLTWRGLNSLKDF
KTPEGGVGLIPKVLIGAAFVSMATVAFMHFLYFRVKAVYGEICELQRLRK
RS*
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mRNA from alignment at P-littoralis_Contig163:320097..323639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig163.41.1 ID=mRNA_P-littoralis_Contig163.41.1|Name=mRNA_P-littoralis_Contig163.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3543bp|location=Sequence derived from alignment at P-littoralis_Contig163:320097..323639+ (Pylaiella littoralis U1_48)
GACACCTTCGCTGCCGCCTAGCTCGCCGCCAGTCTACAAGCGGCTCCCGA
CATGTCCCCGACCGGCCAAAAAATATCCTCCTCCAACCACGAGCTGTATC
ACAAGGCCCTCAGGTTTACAAGTCTTTACGTTTACTTGGGAGTAGCGCAA
GGGACACTGCTTGTAGCTGCAGCTCTCTACGTCTCTGGAGCACCTCTGGG
TCTGCTCCTGGGGTTGCAAGATGCCCCGCCGCAGCGGCAGGTAGAGGAAA
TGAACGCAGAAGAAGGAGGTTCTGCGAAAGAGGTTTGGGTGCAGTCGGGG
GCGCTAAGCTTAGCTACGGCCGGGGCGATGGGACTGCTGAATGGTTTCAT
GGTGAGGCAACAGAGAGCACACACACCACAGCAGTCGTTCATCGGCACCA
TGTTTCAGCTGTGACTACCTGTGTGACCCCGGGTGAACGTCAAGGATATT
ATGGAACGCGGTATACATCATAGACTGGCGCCAGTGGGACGAACACACGC
ACACACGCACACACAGCTAGTTCTTGATAGTTGCAGAGAGCCTGGGGCCT
GGACTATGATCTACAGCAGCAACCGCACTGGCACTGCTGTTGTGCTGCGC
CAGTAGTTTGGCCGTGAAGCCCGCGCGTCATGTGCGTGCACAGATAATAA
GCACTGCAGCGATAGTAACAACGCGGAAGAATTTGTAGGTCGTACGTCCT
AGCATCATCCCGACACAACAACCCCGACATCAAGACTGGCGTGTACTGCT
GTTGCTCGGCATGGCAGGTGCAACGATGCTGTCGGTGGGACAGGAGCAAG
ACGTGTGTGGTCACGAACTGGCACGATCTGTTGAAGTACACGCACATGGG
CCGGACAATAACTGCGGCCATGACAACGGTGAGCAATGCATGACGCGCTC
TAAGTTATTTGGTTTAATCGTGGGAGCACGTCAGCCGTTCGGCATCACCT
GCATCACCAATCTCGTAACGGCGCATGTATGAATAGTGCTTCATGGGCGC
TCTTGCAACTCCTCCATCGTCACCCATGAGGAGGATGAGCTGTTTCGCAC
CAGAACCTTATCCTCTTCTCAAGGCTCCTAAAGTCTACAGGGGTCCTTGG
CTTTCGATGCCCAAAAGGAGGCGTCCGCAGTTTGAGCTCGCAATGCGGCG
TGTGGTTGGATCGTGGGGTGGTTCTGGGTGTAGAGAACAGTATTGGCGCT
GGAAATTCGAGTGTGAATTTTGTCTGGAGTACAGTACGGGTTACACAGCA
GTGGCCGATGTGGAAATCGAAGATAATTTTTATCACCTGCGTTTGCGTCA
TTCCTTGGACGCATCGGAGTTTTTCTCTTGTTGGCAGTCGCAACAGGATG
ACCTACTTACTGTAGTCCGTCCCAACACCACTTACAGGCTGATTCGAGAT
ACTTTTGTAAATTTCTTTCCTCTTGTCTTGTCACAATACTCTCGATTCAA
AAACGAACCGGTCCTGGTGCACACAACACATGCAGGTGTTGACATGGCGA
GGGTTGAACTCGTTGAAGGACTTCAAGACTCCGGAGGGTGGCGTGGGACT
AATTCCGAAGGTCCTCATCGGCGCCGCTTTTGTCAGCATGGCGACCGTGG
CATTCATGCACTTCTTGTATTTCAGAGTAAGTACGTCGTCCGGGTCTTCT
CGAAACCCTACAATAAAGGGTGGAAATGTTATACCGCCATATCATATGAT
ACGCGTCATCGTTCTGGTAAACTGGTGCCAATGCCGCTGCAGACAGACCT
GTTGTGGAAGCTTATTTTCCGACTCAATTCTCGCTACAGCAAGACAAAAA
ATTTCAGCGCCTGAACAGGGCGGTGCTAGAGATGCCCATTCGAAACCTGT
CCGGAAATTCCTCGTTTGGCTGACCTGCCATATATGACGGTTTATATCAC
CCGTAGGCCGTATATCACCCCCCCCAACCTCTGGTGGCTCAAACCAGAGT
ACTCACACGCGATACCGATAGCCAGCATGGAAGAGGGACACGGGCCTTCG
GCAGGCGCTGCGCAACCCACGCCATCGGTTACTGGAACCGGTACTCAACC
CATTACGTCGTTTTTGGGTCGTTCTCAAGTCCCCGCAGCACCTGCTGTTG
CTGCTACTGCTGCTGCTGCCGGTACTGGTGGTGGTGACAATGGTGGTGAT
GGTGATGGTGGTGGTGTTGCTGCTGCTGCTGCTGCTGCTGCTACCAGTAC
TGCTGCTGCTGCCAGTACACAACGGGTCTTACGTTAGCAAAGTGAATTTG
TTAACGCATTTTTTTCGTTTTCAGTATGTGTGACCACAGATCGGAGCTCC
TACCCGGCAAAAGCCGTAAAGGAAGCACTGATTGAAGTGAAGAAAAAAAA
AACATTACATTTTTGTGTGGTGTGTGGGGTACTGTTACCGGTATTGTACC
GGTAAACAGGTAGTGCGGTACGATATCACAGTACCGGTACCGGTAGCAGT
ATGACCGTAATATTAATACGGTAATCAAATCAGTACCGGTAAACACCGCA
GCGGGTATGAAAATAATACCGGTACGTTATCACCCCCCGTCGAACCGTGC
AGACAATCCCCGTTGACGACCTGGCCACCGCACCGGTACGGTGCCGTAAT
TTACCCCCCCCCTGTTATCATTCCCCTTCATATCACCCCCCCCTACTACG
GACTGTAGGGTGGCTCAGCACTCCGCCCTTTATCGCCCCCCGTACGCCGT
ATATCACCCCCCCCTCAAATACACTGTATACCTGATACTTTTTCGGAATC
GAAAAAAGTTATCACCGGGGGGTGATATACACCGTCATATACTGTATTCG
TTGCGGTAGTCTTCAGCTCGAAAACTGGAAAAATCGATCCGGGAGTGGGG
TCCCGTGTGTGACAATCTTGCGCAGAATGCAGCACCATACGAGTACGTAT
CTCTCATCCACCGTCTCCTCGGCCTGTTCGGTTGTCCCCGCTCGCTACCC
CTGTGTCAGGTAAAGGCCGTGTACGGGGAGATCTGTGAGCTTCAACGCTT
GCGTAAACGCTCGTAGCGAGCACGCTCCCGTACAGATTATATCGGATTTT
TATGTGTGTATCATGTGTCAAGATTTGACACGGCCGGGATGATCTCACGA
AGGCTTCATGCTTTCTACGTGGAGCATTGTGTGATACATCGAGGTCCTTT
TGATTTTGTCGGATTTTCAGTATTGTACCTCTATTGGGTAGCTAAGATTT
CCCCGCGTCCTGCTTACCCTTCGTTTGGGTAGGCATGACATGAAAAGCCT
GTGACTACGGAAAGCGTCCTCTATCGGATGAGTCAGCAGCACGGACATAA
TTAGGTACTAAACAGAGATCGGAGTTTTGTTTTTATGACAGCTACGCTTA
TCCGCACACAAGCCTGAGAAGGAGGACGGAGACACATTCCCCGAAGGGAG
GCACGCATCGGAAGAAAACAGAATACGGGGGGAGCGCACCTAAGAAAAAA
TGGGAAAGGCTTTGTCAAAGATACCCCGAGGACGTTCCACAGCAGTACCC
TTTTCTGTCCTTGCTTGAAGCACCCCTGCTCAAAAGGAGGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig163:320097..323639+

>mRNA_P-littoralis_Contig163.41.1 ID=mRNA_P-littoralis_Contig163.41.1|Name=mRNA_P-littoralis_Contig163.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=609bp|location=Sequence derived from alignment at P-littoralis_Contig163:320097..323639+ (Pylaiella littoralis U1_48)
ATGTCCCCGACCGGCCAAAAAATATCCTCCTCCAACCACGAGCTGTATCA
CAAGGCCCTCAGGTTTACAAGTCTTTACGTTTACTTGGGAGTAGCGCAAG
GGACACTGCTTGTAGCTGCAGCTCTCTACGTCTCTGGAGCACCTCTGGGT
CTGCTCCTGGGGTTGCAAGATGCCCCGCCGCAGCGGCAGGTAGAGGAAAT
GAACGCAGAAGAAGGAGGTTCTGCGAAAGAGGTTTGGGTGCAGTCGGGGG
CGCTAAGCTTAGCTACGGCCGGGGCGATGGGACTGCTGAATGGTTTCATG
GTGCAACGATGCTGTCGGTGGGACAGGAGCAAGACGTGTGTGGTCACGAA
CTGGCACGATCTGTTGAAGTACACGCACATGGGCCGGACAATAACTGCGG
CCATGACAACGGTGTTGACATGGCGAGGGTTGAACTCGTTGAAGGACTTC
AAGACTCCGGAGGGTGGCGTGGGACTAATTCCGAAGGTCCTCATCGGCGC
CGCTTTTGTCAGCATGGCGACCGTGGCATTCATGCACTTCTTGTATTTCA
GAGTAAAGGCCGTGTACGGGGAGATCTGTGAGCTTCAACGCTTGCGTAAA
CGCTCGTAG
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