mRNA_P-littoralis_Contig163.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig163.69.1
Unique NamemRNA_P-littoralis_Contig163.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig163.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig163contigP-littoralis_Contig163:457122..457763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size644
Hectar predicted targeting categorysignal anchor
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789785.2590237-UTR-P-littoralis_Contig163:457121..4573581680789785.2590237-UTR-P-littoralis_Contig163:457121..457358Pylaiella littoralis U1_48UTRP-littoralis_Contig163 457122..457358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789785.268663-CDS-P-littoralis_Contig163:457358..4577631680789785.268663-CDS-P-littoralis_Contig163:457358..457763Pylaiella littoralis U1_48CDSP-littoralis_Contig163 457359..457763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig163.69.1prot_P-littoralis_Contig163.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig163 457359..457763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig163.69.1

>prot_P-littoralis_Contig163.69.1 ID=prot_P-littoralis_Contig163.69.1|Name=mRNA_P-littoralis_Contig163.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
LFSLAIAGRLPAVVFFGRVLVTFGVFCHRPLRPLHRRHEFSCYSHFAFFL
LTSVCIHGTHFHHVCLGGVWPCFFFQLHFVALFSLPFGHFFGFISYSSTP
AFSLLAISMSSLSSTRCGGWFGFIVRNPYLSFGF*
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mRNA from alignment at P-littoralis_Contig163:457122..457763-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig163.69.1 ID=mRNA_P-littoralis_Contig163.69.1|Name=mRNA_P-littoralis_Contig163.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=642bp|location=Sequence derived from alignment at P-littoralis_Contig163:457122..457763- (Pylaiella littoralis U1_48)
TTGTTTTCCCTTGCCATTGCCGGCCGTCTTCCCGCCGTTGTCTTCTTTGG
TCGTGTCTTAGTTACTTTTGGCGTATTTTGTCATCGCCCCCTACGACCCC
TTCACCGCCGCCACGAATTCTCCTGTTATAGTCACTTTGCATTTTTCCTT
CTGACGTCAGTCTGCATTCACGGTACACATTTTCATCATGTGTGTTTGGG
TGGTGTGTGGCCTTGTTTTTTTTTTCAACTTCATTTCGTGGCTCTCTTTT
CGCTTCCTTTTGGTCATTTCTTTGGTTTCATAAGTTACAGTAGCACCCCC
GCTTTCTCGTTGCTAGCAATTAGCATGTCTTCACTGTCTAGTACGAGGTG
TGGGGGATGGTTCGGGTTCATTGTGCGAAACCCTTACCTAAGTTTTGGCT
TTTGAAGAACCAAATCTTCGATCCATTTTGAGTGACCGTTTTGATATAAA
CGGTGTATGAGATCTGCAAATGTTGATTATTCAGAGTGGGCTAGTGTTAC
GGAGTATTGGGTATACCCCTAGGTAAGGGTATTATCTAGACATAGGGTAC
CTCTAGTACGTATTCCAAGCCATCGGGCCCCCTGGCCCGATGACGCCCGT
GCCCTCAGTGTGTCCTCTCGGCTGAGAGACTAATAAGAGATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig163:457122..457763-

>mRNA_P-littoralis_Contig163.69.1 ID=mRNA_P-littoralis_Contig163.69.1|Name=mRNA_P-littoralis_Contig163.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig163:457122..457763- (Pylaiella littoralis U1_48)
TTGTTTTCCCTTGCCATTGCCGGCCGTCTTCCCGCCGTTGTCTTCTTTGG
TCGTGTCTTAGTTACTTTTGGCGTATTTTGTCATCGCCCCCTACGACCCC
TTCACCGCCGCCACGAATTCTCCTGTTATAGTCACTTTGCATTTTTCCTT
CTGACGTCAGTCTGCATTCACGGTACACATTTTCATCATGTGTGTTTGGG
TGGTGTGTGGCCTTGTTTTTTTTTTCAACTTCATTTCGTGGCTCTCTTTT
CGCTTCCTTTTGGTCATTTCTTTGGTTTCATAAGTTACAGTAGCACCCCC
GCTTTCTCGTTGCTAGCAATTAGCATGTCTTCACTGTCTAGTACGAGGTG
TGGGGGATGGTTCGGGTTCATTGTGCGAAACCCTTACCTAAGTTTTGGCT
TTTGA
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