mRNA_P-littoralis_Contig163.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig163.11.1
Unique NamemRNA_P-littoralis_Contig163.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig163.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig163contigP-littoralis_Contig163:47061..48813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size710
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789785.118929-UTR-P-littoralis_Contig163:47060..473361680789785.118929-UTR-P-littoralis_Contig163:47060..47336Pylaiella littoralis U1_48UTRP-littoralis_Contig163 47061..47336 -
1680789785.1652627-UTR-P-littoralis_Contig163:47693..477171680789785.1652627-UTR-P-littoralis_Contig163:47693..47717Pylaiella littoralis U1_48UTRP-littoralis_Contig163 47694..47717 -
1680789785.1797004-UTR-P-littoralis_Contig163:48760..488131680789785.1797004-UTR-P-littoralis_Contig163:48760..48813Pylaiella littoralis U1_48UTRP-littoralis_Contig163 48761..48813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789785.1535447-CDS-P-littoralis_Contig163:47336..476931680789785.1535447-CDS-P-littoralis_Contig163:47336..47693Pylaiella littoralis U1_48CDSP-littoralis_Contig163 47337..47693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig163.11.1prot_P-littoralis_Contig163.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig163 47337..47693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig163.11.1

>prot_P-littoralis_Contig163.11.1 ID=prot_P-littoralis_Contig163.11.1|Name=mRNA_P-littoralis_Contig163.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MDLPLLGPLCEERDHEIGVSPETRMERCICVGLSEPQLQVRYGPSYISDI
RVAEGRAGIHPTTLSCSRQPATISILFSHPRTTTTIHRTCPALGLRRGNT
SLHIGGVHVHVVSWRSVT*
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mRNA from alignment at P-littoralis_Contig163:47061..48813-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig163.11.1 ID=mRNA_P-littoralis_Contig163.11.1|Name=mRNA_P-littoralis_Contig163.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1753bp|location=Sequence derived from alignment at P-littoralis_Contig163:47061..48813- (Pylaiella littoralis U1_48)
GGAAGGTTCTGATAGGGGAAGGCCCGGCTCAGTTGTTGTGGCGTTTTAAG
AAGGTATGGCCATCAGGGAGTAGTGAGAAGGATGAACAATTGACACGAAA
AAAGGAACGTTAGCGTTGTGTTGCAGGCAAGAATCAAGGCGACCCGAGTA
AAAAACATGTGCAGGCCATGAAACGCACGTGAGACTCACAATGTGGAGCT
GCTACTAAAGATATATCGACACTACTGGATTGATTCTCCACTGCACCACA
AGCAAGTCTTCCGGGTTTGGCGTACCGTCAAATCGGCACGGGGCTTCCAT
TGTGTCGCTGCAGTATCCAGCCGAATTCACCACCCCATTGACACAGCAAG
CACTCCCGCTGAAACCTGCGGCCGCTCCGGAACTAATGCACCCGCTACCA
CCGCATTGGTTGCATCCAAGCGGGCAGCAAACAACATCGACATTACTGTT
TCATCCTTCGATGCCGGGGATGCCCAGATCAAAGCACGTCGAGACTGCTC
AACGGTTTCAAAGAGAACAGCAGTCAGTCAAGGGGATATTTTGTCGGCAC
ATGAAAGGCGATTGCCACACTCGCCCAAGCAATAGCCGTTAATGCAGCTG
CCACTCCTGTCAACGGCTTCGACGACATCGATGAAAACGGCACAGCAACC
GTAAGAGCGTTGAAAAACGTGTACCTATTGTTCCTGCTTACACCCAAGGG
GGCCAAGCATGCCTCAAAGGCTGTTTGCCGATGCTCTGGGCGCCTCTTGT
TGCATTTTTGTGCACACAACACCCGCTCGATAAAATACGGGTACTTATGA
AGAAGGGCTCGAGGGTGCCGTCGTTTTTTTGCTTGGGCTGTGCGATCCCG
AGCTCAGTAGTATTTATCTTGTGAGGAGTTCAGCTGTGCATCCGACATTC
AGCTCGTGTACCAACACAATATTTTGCTGTAAGCAAGGGAGGTGGCGCTT
TCAACACCAGGAAAACGGCTACCGGCTTAAATGTAAACCCGAGCTCGAAT
CGTGAGAACGTCAGCCAGACATGCTGGTACTCCCCCGTCATACATCAAAC
CTCCTCGACGTACTTTGCTCGAATTGGTCCTTACCTTCTACGGGAGCCGG
AGTGACGGGGGCCGGAGTGGATGGACCTGCCGTTGCTGGGACCACTTTGT
GAAGAAAGGGATCATGAAATTGGCGTCTCACCAGAGACTAGGATGGAGCG
TTGTATTTGCGTCGGGCTTTCAGAACCCCAACTTCAAGTCAGGTATGGCC
CGTCATATATATCTGATATTCGTGTTGCCGAGGGAAGAGCGGGGATTCAC
CCGACGACTTTGTCATGTTCACGGCAACCCGCCACCATCTCAATCTTGTT
CAGTCACCCAAGAACAACAACGACGATCCACCGCACCTGCCCTGCACTAG
GCCTCCGTCGTGGTAACACTTCCCTCCACATTGGCGGTGTACACGTACAT
GTCGTTTCCTGGAGGAGCGTAACCTGATTGCTTTGACAGCAAGAAGACGT
GATGGTGAACGAGCGAATGCACGGGCTTGTGTCCCGTGGGGTGGTCTATG
GATTGGCTTTAGTACCGTGCGGGTTGTGCACGGTGAATTTTGGCGCTGTG
TAGACGTGTTTACATTCGCCACACGAACGTTGGCGGAAAACCAGGCTAGA
GAGAGGAACACTAGGGAGTTCAATACATGCGACAGCAGGAGTGCCAAGTC
AAAAGTTGAGCGATATACTTTGTGATAGTGCGCAGGACGCTTTCGCACAG
CCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig163:47061..48813-

>mRNA_P-littoralis_Contig163.11.1 ID=mRNA_P-littoralis_Contig163.11.1|Name=mRNA_P-littoralis_Contig163.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig163:47061..48813- (Pylaiella littoralis U1_48)
ATGGACCTGCCGTTGCTGGGACCACTTTGTGAAGAAAGGGATCATGAAAT
TGGCGTCTCACCAGAGACTAGGATGGAGCGTTGTATTTGCGTCGGGCTTT
CAGAACCCCAACTTCAAGTCAGGTATGGCCCGTCATATATATCTGATATT
CGTGTTGCCGAGGGAAGAGCGGGGATTCACCCGACGACTTTGTCATGTTC
ACGGCAACCCGCCACCATCTCAATCTTGTTCAGTCACCCAAGAACAACAA
CGACGATCCACCGCACCTGCCCTGCACTAGGCCTCCGTCGTGGTAACACT
TCCCTCCACATTGGCGGTGTACACGTACATGTCGTTTCCTGGAGGAGCGT
AACCTGA
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