mRNA_P-littoralis_Contig1628.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1628.5.1
Unique NamemRNA_P-littoralis_Contig1628.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1628.5.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 5.190e-32
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:   73 MVYPVRGITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAAFAEGSGYLGITDPEA 342
            M YPVRG+T LSA+SEG+EE GGGD+  REAA   PAADEI AVQDEIRGVE  IE+ E+ET +V KKIDD+EAA A G+ YLG+TDPEA
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEA 90
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BLAST of mRNA_P-littoralis_Contig1628.5.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.860e-28
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   94 ITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAAFAEGSGYLGITDPEA 342
            +TSLSA+SEG+EE GGGD+D REAA   PAADEI AVQD+IRGVE   E+ EKET +V KKIDD+EAA A GS YLG+TDPEA
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEA 83
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BLAST of mRNA_P-littoralis_Contig1628.5.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.650e-26
Identity = 62/91 (68.13%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:   73 MVYPVRGITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAA-FAEGSGYLGITDPEA 342
            MVYPVRGITSLSALSEGNEE GGGD+DTREAAGGSPAADEI AVQ                      KIDDVEAA  A GSGYLG+TDPEA
Sbjct:    1 MVYPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEA 91
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BLAST of mRNA_P-littoralis_Contig1628.5.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.430e-25
Identity = 62/114 (54.39%), Postives = 67/114 (58.77%), Query Frame = 1 
Query:    1 TSSLSQPSGATFLVFGTFGACGAHMVYPVRGITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAAFAEGSGYLGITDPEA 342
            T SLSQPSG    VFG    CGA   YPV G+TSLSA+SEG EE GGGD+  REAA GSPAADEI AVQ                        D +EAA A GS YLG+TDPEA
Sbjct:   45 TFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEA 158
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BLAST of mRNA_P-littoralis_Contig1628.5.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 4.450e-18
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   94 ITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIEN-------VEKETKKVAKKIDDVEAAFAEGSGYLGITDPEA 342
            +TS SA+SEG+EE GGGD+D REAA GSPAADEI AVQ                    E+ET +V KKID +EAA A GS YLG+TDPEA
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEA 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1628.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LPP1_ECTSI5.190e-3270.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI6.860e-2871.08Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI1.650e-2668.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI1.430e-2554.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI4.450e-1856.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1628contigP-littoralis_Contig1628:4271..4612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size343
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.873778-CDS-P-littoralis_Contig1628:4270..46121680789784.873778-CDS-P-littoralis_Contig1628:4270..4612Pylaiella littoralis U1_48CDSP-littoralis_Contig1628 4271..4612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1628.5.1prot_P-littoralis_Contig1628.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1628 4271..4612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1628.5.1

>prot_P-littoralis_Contig1628.5.1 ID=prot_P-littoralis_Contig1628.5.1|Name=mRNA_P-littoralis_Contig1628.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
TSSLSQPSGATFLVFGTFGACGAHMVYPVRGITSLSALSEGNEEGGGGDY
DTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAAF
AEGSGYLGITDPEA
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mRNA from alignment at P-littoralis_Contig1628:4271..4612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1628.5.1 ID=mRNA_P-littoralis_Contig1628.5.1|Name=mRNA_P-littoralis_Contig1628.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig1628:4271..4612+ (Pylaiella littoralis U1_48)
ACGTCTTCGCTCTCGCAGCCCTCTGGTGCGACCTTCCTTGTGTTCGGGAC
GTTTGGCGCTTGTGGGGCGCACATGGTTTACCCAGTGCGAGGGATCACGA
GCTTGAGCGCGCTGAGCGAGGGCAATGAAGAGGGGGGCGGCGGCGATTAT
GATACGCGAGAAGCGGCAGGCGGCAGTCCGGCGGCGGACGAGATCCTTGC
GGTCCAGGATGAGATCCGTGGTGTCGAGGCCATGATCGAGAATGTCGAGA
AGGAGACTAAAAAGGTGGCCAAGAAGATCGATGATGTTGAGGCTGCTTTT
GCTGAGGGCTCCGGGTACCTCGGAATTACCGACCCCGAAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1628:4271..4612+

>mRNA_P-littoralis_Contig1628.5.1 ID=mRNA_P-littoralis_Contig1628.5.1|Name=mRNA_P-littoralis_Contig1628.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig1628:4271..4612+ (Pylaiella littoralis U1_48)
ACGTCTTCGCTCTCGCAGCCCTCTGGTGCGACCTTCCTTGTGTTCGGGAC
GTTTGGCGCTTGTGGGGCGCACATGGTTTACCCAGTGCGAGGGATCACGA
GCTTGAGCGCGCTGAGCGAGGGCAATGAAGAGGGGGGCGGCGGCGATTAT
GATACGCGAGAAGCGGCAGGCGGCAGTCCGGCGGCGGACGAGATCCTTGC
GGTCCAGGATGAGATCCGTGGTGTCGAGGCCATGATCGAGAATGTCGAGA
AGGAGACTAAAAAGGTGGCCAAGAAGATCGATGATGTTGAGGCTGCTTTT
GCTGAGGGCTCCGGGTACCTCGGAATTACCGACCCCGAAGCC
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