mRNA_P-littoralis_Contig1621.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1621.1.1
Unique NamemRNA_P-littoralis_Contig1621.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1621.1.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 2.540e-84
Identity = 171/218 (78.44%), Postives = 178/218 (81.65%), Query Frame = 1 
Query:    1 MSRNCVSVLLLVCIAQACLAFVPSWTATFRSSRSQPPASTPAATTFSLSQPSGAICPLFGACGTCGAQIFYPVRGMTSLSAMSEGDEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXDVEAAFAGGSGYLGMTDPEALFREKEQXXXXXXXXXXXXXXXLELLLKKEDRLSRIE-QLLLSFCTGNSPPLQSNLRTLW 651
            MSRNCVSVLLLV IAQACLAFVPSWTATFRSSRSQPPASTPAA TFSLSQPSG ICP+FGAC TCGAQ FYPV GMTSLSAMSEG EEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXX   +EAA AGGS YLGMTDPEAL ++                     L +KE++L     QLLLSFCTGNSPPLQSNLRTLW
Sbjct:    1 MSRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQ---------------------LGRKEEQLRXXXXQLLLSFCTGNSPPLQSNLRTLW 197
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BLAST of mRNA_P-littoralis_Contig1621.1.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.230e-31
Identity = 89/158 (56.33%), Postives = 97/158 (61.39%), Query Frame = 1 
Query:  205 IFYPVRGMTSLSAMSEGDEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXDVEAAFAGGSGYLGMTDPEALFREKEQXXXXXXXXXXXXXXXL--------------ELLLKKEDRLSRIEQLLLSFCTGNSPPLQSN 636
            +FYPVRGMT LSAMSEGDEEEGGGDHHAREAAD  PAADEIRAVQ                         D+EAA AGG+ YLGMTDPEAL ++ EQ   XXXXXXXXXXXX               ELLLK EDRLSR EQ    F   N+P  Q++
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQLEQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQ----FRANNAPADQAS 154
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BLAST of mRNA_P-littoralis_Contig1621.1.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.840e-27
Identity = 102/129 (79.07%), Postives = 110/129 (85.27%), Query Frame = 1 
Query:  205 IFYPVRGMTSLSAMSEGDEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXDVEAA-FAGGSGYLGMTDPEALFREKEQXXXXXXXXXXXXXXXLELLLKKEDRLSRIEQ 588
            + YPVRG+TSLSA+SEG+EE+GGGDH  REAA GSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXX   DVEAA  AGGSGYLGMTDPEAL +EKE+  XXXXXXXXXXXXX   +L KE RL  IEQ
Sbjct:    1 MVYPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKEKERLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQ 129
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BLAST of mRNA_P-littoralis_Contig1621.1.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.700e-25
Identity = 90/147 (61.22%), Postives = 95/147 (64.63%), Query Frame = 1 
Query:  226 MTSLSAMSEGDEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXDVEAAFAGGSGYLGMTDPEALF----REKEQXXXXXXXXXXXXXXXLELLL-----KKEDRLSRIEQLLLSFCTGNSPPLQSNL 639
            MTSLSAMSEGDEEEGGGDH AREAAD  PAADEIRAVQ         X               D+EAA AGGS YLGMTDPEAL     R++EQXXXXXXXXXXXXXXX ELLL     KKEDR SRIEQL       N+P    N+
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLR----ANNAPAANKNV 143
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BLAST of mRNA_P-littoralis_Contig1621.1.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.050e-23
Identity = 97/136 (71.32%), Postives = 101/136 (74.26%), Query Frame = 1 
Query:  226 MTSLSAMSEGDEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXDV-------EAAFAGGSGYLGMTDPEALF----REKEQXXXXXXXXXXXXXXXLE---LLLKKEDRLSRIEQL 591
            MTS SAMSEGDEEEGGGDH AREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXX      +V       EAA AGGS YLGMTDPEAL     R++EQ        XXXXXXX     +LLKKEDRLSRIEQL
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQL 136
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1621.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM56_ECTSI2.540e-8478.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI3.230e-3156.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI2.840e-2779.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI1.700e-2561.22Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI1.050e-2371.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1621contigP-littoralis_Contig1621:4..810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size654
Hectar predicted targeting categorychloroplast
Exons2
Cds size654
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.6456327-CDS-P-littoralis_Contig1621:3..651680789784.6456327-CDS-P-littoralis_Contig1621:3..65Pylaiella littoralis U1_48CDSP-littoralis_Contig1621 4..65 -
1680789784.6573992-CDS-P-littoralis_Contig1621:218..8101680789784.6573992-CDS-P-littoralis_Contig1621:218..810Pylaiella littoralis U1_48CDSP-littoralis_Contig1621 219..810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1621.1.1prot_P-littoralis_Contig1621.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1621 4..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1621.1.1

>prot_P-littoralis_Contig1621.1.1 ID=prot_P-littoralis_Contig1621.1.1|Name=mRNA_P-littoralis_Contig1621.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp
MSRNCVSVLLLVCIAQACLAFVPSWTATFRSSRSQPPASTPAATTFSLSQ
PSGAICPLFGACGTCGAQIFYPVRGMTSLSAMSEGDEEEGGGDHHAREAA
DGSPAADEIRAVQDEIRGVERKIEDVEKETEEVVKKIDDVEAAFAGGSGY
LGMTDPEALFREKEQLRRKEEQLLREEEQLLELLLKKEDRLSRIEQLLLS
FCTGNSPPLQSNLRTLW*
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mRNA from alignment at P-littoralis_Contig1621:4..810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1621.1.1 ID=mRNA_P-littoralis_Contig1621.1.1|Name=mRNA_P-littoralis_Contig1621.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=807bp|location=Sequence derived from alignment at P-littoralis_Contig1621:4..810- (Pylaiella littoralis U1_48)
ATGTCAAGGAATTGTGTGTCGGTTCTTCTCCTGGTTTGTATCGCACAAGC
ATGCTTGGCCTTCGTCCCGAGCTGGACTGCAACGTTCAGGTCGTCACGCT
CGCAGCCCCCTGCTTCCACGCCTGCGGCGACGACGTTTTCGCTCTCGCAG
CCCTCTGGTGCGATCTGCCCTTTGTTTGGGGCGTGTGGCACTTGTGGGGC
GCAAATTTTTTACCCGGTGCGAGGGATGACGAGCTTGAGCGCGATGAGCG
AGGGCGACGAGGAGGAGGGGGGCGGCGATCATCATGCGCGAGAAGCTGCC
GATGGCAGTCCGGCGGCGGACGAGATCCGTGCGGTCCAAGATGAGATCCG
TGGTGTAGAGCGCAAGATCGAGGATGTAGAGAAGGAGACGGAAGAGGTAG
TCAAGAAGATCGATGATGTTGAGGCAGCTTTTGCCGGGGGCTCCGGGTAC
CTCGGAATGACCGACCCCGAAGCCCTGTTCAGGGAGAAGGAGCAGCTCCG
CAGGAAGGAGGAGCAGCTCCTCAGGGAGGAGGAGCAGCTCCTCGAGCTCC
TTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCAAC
AACGCCCCCGCAGGTATAGAAGCGTCCCAATATGTGTGATCATTCACAGC
AGTGTACAGATTAGGAAAGGCATGCAGGTCACCCGCAATAAAAGCAGACC
ATTTGAAACAATTCCAGGAGTTCATTGTGGCCGGTACATTTGTAGTGCTG
TCGTTTTGCACGGGCAATTCGCCTCCTCTTCAAAGCAATCTGCGGACGTT
ATGGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1621:4..810-

>mRNA_P-littoralis_Contig1621.1.1 ID=mRNA_P-littoralis_Contig1621.1.1|Name=mRNA_P-littoralis_Contig1621.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig1621:4..810- (Pylaiella littoralis U1_48)
ATGTCAAGGAATTGTGTGTCGGTTCTTCTCCTGGTTTGTATCGCACAAGC
ATGCTTGGCCTTCGTCCCGAGCTGGACTGCAACGTTCAGGTCGTCACGCT
CGCAGCCCCCTGCTTCCACGCCTGCGGCGACGACGTTTTCGCTCTCGCAG
CCCTCTGGTGCGATCTGCCCTTTGTTTGGGGCGTGTGGCACTTGTGGGGC
GCAAATTTTTTACCCGGTGCGAGGGATGACGAGCTTGAGCGCGATGAGCG
AGGGCGACGAGGAGGAGGGGGGCGGCGATCATCATGCGCGAGAAGCTGCC
GATGGCAGTCCGGCGGCGGACGAGATCCGTGCGGTCCAAGATGAGATCCG
TGGTGTAGAGCGCAAGATCGAGGATGTAGAGAAGGAGACGGAAGAGGTAG
TCAAGAAGATCGATGATGTTGAGGCAGCTTTTGCCGGGGGCTCCGGGTAC
CTCGGAATGACCGACCCCGAAGCCCTGTTCAGGGAGAAGGAGCAGCTCCG
CAGGAAGGAGGAGCAGCTCCTCAGGGAGGAGGAGCAGCTCCTCGAGCTCC
TTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCTGCTGTCG
TTTTGCACGGGCAATTCGCCTCCTCTTCAAAGCAATCTGCGGACGTTATG
GTAG
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