mRNA_P-littoralis_Contig162.75.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig162.75.1
Unique NamemRNA_P-littoralis_Contig162.75.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.920e-26
Identity = 57/122 (46.72%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMV 369
            K+++ F+L+AL++ GS +V GR   R ++PPN  P+ D+T+ GG++ALTG Q+W++SSI P L  PIF++   +  YV+   +A VA R  + N G+ AG   VC AF DLI ACS SSF+V
Sbjct:  133 KKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDV-NSGTPAGKAAVCAAFQDLIKACSWSSFVV 253          
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.820e-26
Identity = 57/122 (46.72%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMV 369
            K+++ F+L+AL++ GS +V GR   R ++PPN  P+ D+T+ GG++ALTG Q+W++SSI P L  PIF++   +  YV+   +A VA R  + N G+ AG   VC AF DLI ACS SSF+V
Sbjct:  238 KKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDV-NSGTPAGKAAVCAAFQDLIKACSWSSFVV 358          
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Match: D7FSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.490e-24
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMV 369
            K+++ F+L+AL++  S +V GR   R ++P N  P+ D+T+ GG++ALTG Q+W++SSI P L  PIF++   +  YV+   +A VA R  + N G+ AG   VC AF DLI ACS SSF+V
Sbjct:   14 KKIMTFVLDALDSAVSEIVRGRFAWRRMLPQNVLPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDV-NSGTPAGKAAVCAAFQDLIKACSWSSFVV 134          
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.970e-21
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMV 369
            K+++ F+++AL+  GS +V  R     ++PPN  P+ D+T+ GG+SALTG Q+W++SS  P L  PIF++  ++  YV+   +  VA R  +   G+ AG   VC AF DL+ ACS S F+V
Sbjct:  144 KKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVDP-GTPAGKAAVCNAFQDLVKACSWSCFVV 264          
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.190e-14
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   49 SALVSGR----LKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMV 369
            SAL SG+      + ++ P  +E + D+T+ GG SALTG Q+W++SSI+P L  PIF++  ++  YV+   +  VA R  +   G+ AG   VC AF DL+ ACS S F+V
Sbjct:   76 SALNSGKKIMGFVMDALDPAGSEIVPDITSAGGRSALTGQQLWLVSSIVPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVEP-GTPAGKAAVCNAFQDLVKACSWSCFVV 185          
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.180e-13
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 213
            K+++ F+++AL+  G+ +V  R   R ++PPN  P+ D+T+ GG SALTG Q+W+++SI P L  PIF++
Sbjct:  189 KKIMGFVMDALDPTGTEVVRARFAWRRMLPPNVSPIADITSAGGRSALTGQQLWLVASIFPFLLAPIFSS 258          
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.840e-11
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 FLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 213
            F+++AL+  GS +V  R   R ++P N  P+ D+T+ GG+SALTG Q+W++SSI P L  P+F++
Sbjct:  608 FVMDALDPAGSDIVRARFAWRRMLPRNVSPIADITSAGGWSALTGQQLWIVSSIFPFLLAPMFSS 672          
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.310e-5
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    4 KRMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMK 228
            +++ + LL  L+   G  L+S   K  S+      PL D  +DGGFSAL+G  +W LSS+  L+FRP+  +  SMK
Sbjct:  300 RKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWTLSSVALLVFRPVLRSVASMK 375          
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 6.250e-5
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    7 RMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMK 228
            ++ + LL  L+   G  L+S   K  S+      PL D  +DGGFSAL+G  +W LSS+  L+FRP+  +  SMK
Sbjct:  593 KIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWRLSSVALLVFRPVLRSVASMK 667          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G4Y8_ECTSI1.920e-2646.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZI4_ECTSI3.820e-2646.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSA9_ECTSI2.490e-2445.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW9_ECTSI1.970e-2140.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K975_9PHAE2.190e-1441.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPX4_9PHAE9.180e-1342.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGI1_9PHAE2.840e-1144.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJH2_ECTSI1.310e-539.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW6_ECTSI6.250e-540.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:470927..471755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size369
Hectar predicted targeting categoryother localisation
Exons2
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.4453623-CDS-P-littoralis_Contig162:470926..4710701680789784.4453623-CDS-P-littoralis_Contig162:470926..471070Pylaiella littoralis U1_48CDSP-littoralis_Contig162 470927..471070 -
1680789784.4543362-CDS-P-littoralis_Contig162:471530..4717461680789784.4543362-CDS-P-littoralis_Contig162:471530..471746Pylaiella littoralis U1_48CDSP-littoralis_Contig162 471531..471746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.46608-UTR-P-littoralis_Contig162:471746..4717551680789784.46608-UTR-P-littoralis_Contig162:471746..471755Pylaiella littoralis U1_48UTRP-littoralis_Contig162 471747..471755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.75.1prot_P-littoralis_Contig162.75.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig162 470927..471746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig162.75.1

>prot_P-littoralis_Contig162.75.1 ID=prot_P-littoralis_Contig162.75.1|Name=mRNA_P-littoralis_Contig162.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQ
IWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLK
NVCGAFLDLITACSASSFMV
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mRNA from alignment at P-littoralis_Contig162:470927..471755-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig162.75.1 ID=mRNA_P-littoralis_Contig162.75.1|Name=mRNA_P-littoralis_Contig162.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=829bp|location=Sequence derived from alignment at P-littoralis_Contig162:470927..471755- (Pylaiella littoralis U1_48)
GCAAAGCGCATGATACGCTTCTTGCTGAATGCACTCAACACCGACGGATC GGCGCTCGTTTCCGGGCGGTTGAAGCTGCGCTCGATAATACCACCAAACG CGGAGCCGCTGGGAGATGTCACAACAGACGGCGGTTTTTCTGCCTTGACT GGAAACCAGATCTGGGTGTTGAGCAGCATTCTGCCTCTGCTTTTCAGGCC TATTTTCGCCAACCACATGTCCATGGTAAGCAAATAATCCGTCGATTTTT TGGGCTTCAGGTCAACGCCCAAGTTTCTTACACCCTTTGTATTTTACTAT ACCTTTTGAGTTTCTTCCGGGGGGGGGAGGCGATATTGACGACGTTAAGC TGGGGGGGGGGGGGGTGGCGGAGGGGGAGGAGGCGGTATTGACGACGTGA AGCTCGGGGACATATTATTTATTCAGCGCAATACCTACCAATGGTCGGCG GTGTTTGTTCTTTTTTTTTTGCACACACAGCATGATTCTATTGAGTGTAC AAAATGTATTCGCTTTCCCGGGCTGCCCGATATTTTTTTATCCCCCCCCC TCCCTCTCGAGTTACAACGCAGTATCACGTTTTTCATGGGGCAACTCTAC GATATTCAACAATCACATCCCGTGAAGTTCATGCACCTCTCTGTTATCCC TCCAAACCCCCCCCCGGTACCTACCGCGACTGCAGAAGGCCTACGTAAAA GTGGCCGACATCGCGGCGGTGGCTCAGCGTAAGGGGATATCAAATTGTGG CAGCGTGGCTGGTCTAAAGAACGTATGCGGAGCGTTCTTGGACTTGATCA CGGCCTGTAGTGCGAGCTCATTCATGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig162:470927..471755-

>mRNA_P-littoralis_Contig162.75.1 ID=mRNA_P-littoralis_Contig162.75.1|Name=mRNA_P-littoralis_Contig162.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig162:470927..471755- (Pylaiella littoralis U1_48)
ATGATACGCTTCTTGCTGAATGCACTCAACACCGACGGATCGGCGCTCGT
TTCCGGGCGGTTGAAGCTGCGCTCGATAATACCACCAAACGCGGAGCCGC
TGGGAGATGTCACAACAGACGGCGGTTTTTCTGCCTTGACTGGAAACCAG
ATCTGGGTGTTGAGCAGCATTCTGCCTCTGCTTTTCAGGCCTATTTTCGC
CAACCACATGTCCATGAAGGCCTACGTAAAAGTGGCCGACATCGCGGCGG
TGGCTCAGCGTAAGGGGATATCAAATTGTGGCAGCGTGGCTGGTCTAAAG
AACGTATGCGGAGCGTTCTTGGACTTGATCACGGCCTGTAGTGCGAGCTC
ATTCATGGTG
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