mRNA_P-littoralis_Contig162.72.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig162.72.1
Unique NamemRNA_P-littoralis_Contig162.72.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig162.72.1 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 6.100e-54
Identity = 98/199 (49.25%), Postives = 129/199 (64.82%), Query Frame = 3 
Query:    6 GLSHNTVWCFNHWGQAPEAASGGMGKLRGGSVEDAGRMPSDWMLSRASRGNDIELFVSAAAARDGTAGVGHTTIGKAIFFFEHIGNDQRSGEDGHI-EEGVVTVWVAVLKYVTAGRGNLRKEDTVTGFDVFMLRSKLSFFPVAAIRRVVHIVHDCPATGASACGLVSDGNNRSVWQCKLDKRSRYLLNGYFHSIVRDPI 599
            GL H++V  FNHWG AP  A+ G G +RG  V+DAGR  S W  S ASRG+D+E++++A   R+G  G+  TT+GK  FFFEH GN  R  ++ ++  EG  T+W+AV +YVTAG GN  +    TG   F +R  L+F+P  AIRRVVH++H CP +G SACGLV +   +  W+C L   S YLLN YFHS  RD I
Sbjct:  230 GLVHDSVEVFNHWGGAPGEANAGTGTVRGCPVKDAGRH-SGWTRSTASRGSDVEIYLTANDQREGRYGLEQTTLGKVAFFFEHQGNPWRRDDESNVLPEGEYTIWMAVSEYVTAGVGNNLQLHHTTGLAEFKMRHTLTFYPTPAIRRVVHMMHACPTSGESACGLVRESKRQ--WRCNLLGTSTYLLNKYFHSPGRDSI 425
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BLAST of mRNA_P-littoralis_Contig162.72.1 vs. uniprot
Match: A0A6H5JRL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL1_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 5.140e-18
Identity = 75/222 (33.78%), Postives = 102/222 (45.95%), Query Frame = 3 
Query:    9 LSHNTVWCFNHWGQAPEAASGGMGKLRGGSVEDAGRMP--SDWMLSRASRGNDIELFVSAAAARDGTA-GVGHTTIGKAIFFFEHIGNDQR-SGEDGHIEEGVVTVWVAVLKYVTAGRGNLRKEDTVTGFDVFML--RSKLSFFPVAAIRRVVHIVHDCP------ATGASACGL----VSDGNNRSVWQCKL--------DKRSRYLLNGYFHSIVRDPIV 602
            L    + C  +  + P+ AS G+G+LRGG  + A R+    DW L +  +GND+E+F       D  +  V   T+ K I+FF+H GN    SGE         T WV    YV  G GN R  D+VT      L  R +   +PV AIRR VH+ H CP      ++ +  CG      S G +R VW  +         +   RYLLN   HS  +D  V
Sbjct:  191 LESTLIECSRYM-RVPQVASCGVGRLRGGDAKAAARVGPRDDWALGQ-GQGNDVEIFNKPPPTGDDVSPSVDDLTMSKIIYFFDHKGNKNSFSGEPRPS-----TWWVLAYDYVGIGNGNERVPDSVTRHPTLSLQGRGRPKVYPVQAIRRQVHMYHQCPQHSDVGSSTSQICGESQGPYSGGRDR-VWHHRFRLALPGSRNGYDRYLLNEVHHSTNQDTFV 404
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BLAST of mRNA_P-littoralis_Contig162.72.1 vs. uniprot
Match: A0A6H5JZ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ87_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 7.090e-18
Identity = 60/182 (32.97%), Postives = 80/182 (43.96%), Query Frame = 3 
Query:   57 EAASGGMGKLRGGSVEDAGRM--PSDWMLSRASRGNDIELF-VSAAAARDGTAGVGHTTIGKAIFFFEHIGNDQRSGEDGHIEEGVVTVWVAVLKYVTAGRGNLRKEDTVTGFDVFMLRSK--LSFFPVAAIRRVVHIVHDCP-----ATGASACGLVSDGNNRSVWQCKLDKRSRYLLNGY 572
            +  S   G+L+GG V+ A R   P DW L +  +G+D+++F +       G       T+ K I+FF H GN          E    T WV    YV  G GN R  D++TG     LR +     +PV AIRR VH+ H CP     A G+  CG         VW+ K         NGY
Sbjct:    5 QVVSCSQGRLKGGDVKAAARPGPPDDWALGQ-GQGDDVKIFNIPPPTGDHGPPPADQLTLSKIIYFFLHRGNKNSLSS----EPPPFTWWVLAYDYVGVGHGNERVPDSITGHPTLSLRGRGRPKVYPVHAIRRQVHMYHQCPQGQDGAEGSRLCGETKGAGRDRVWRLKFRLALPGSSNGY 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LF20_9PHAE6.100e-5449.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL1_9PHAE5.140e-1833.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ87_9PHAE7.090e-1832.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:468925..470044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size750
Hectar predicted targeting categoryother localisation
Exons2
Cds size684
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.391004-UTR-P-littoralis_Contig162:468924..4689881680789784.391004-UTR-P-littoralis_Contig162:468924..468988Pylaiella littoralis U1_48UTRP-littoralis_Contig162 468925..468988 -
1680789784.4212384-UTR-P-littoralis_Contig162:470042..4700441680789784.4212384-UTR-P-littoralis_Contig162:470042..470044Pylaiella littoralis U1_48UTRP-littoralis_Contig162 470043..470044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.4003916-CDS-P-littoralis_Contig162:468988..4690691680789784.4003916-CDS-P-littoralis_Contig162:468988..469069Pylaiella littoralis U1_48CDSP-littoralis_Contig162 468989..469069 -
1680789784.4102774-CDS-P-littoralis_Contig162:469439..4700421680789784.4102774-CDS-P-littoralis_Contig162:469439..470042Pylaiella littoralis U1_48CDSP-littoralis_Contig162 469440..470042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.72.1prot_P-littoralis_Contig162.72.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig162 468989..470042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig162.72.1

>prot_P-littoralis_Contig162.72.1 ID=prot_P-littoralis_Contig162.72.1|Name=mRNA_P-littoralis_Contig162.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
MGLSHNTVWCFNHWGQAPEAASGGMGKLRGGSVEDAGRMPSDWMLSRASR
GNDIELFVSAAAARDGTAGVGHTTIGKAIFFFEHIGNDQRSGEDGHIEEG
VVTVWVAVLKYVTAGRGNLRKEDTVTGFDVFMLRSKLSFFPVAAIRRVVH
IVHDCPATGASACGLVSDGNNRSVWQCKLDKRSRYLLNGYFHSIVRDPIV
FQVIFNPRSGMGQPEAAVVEIPTSCSL*
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mRNA from alignment at P-littoralis_Contig162:468925..470044-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig162.72.1 ID=mRNA_P-littoralis_Contig162.72.1|Name=mRNA_P-littoralis_Contig162.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1120bp|location=Sequence derived from alignment at P-littoralis_Contig162:468925..470044- (Pylaiella littoralis U1_48)
ACATGGGGCTATCCCACAACACCGTGTGGTGCTTCAACCATTGGGGGCAA
GCACCGGAAGCCGCCAGCGGCGGCATGGGCAAACTCCGTGGTGGCTCGGT
GGAGGATGCCGGTCGTATGCCCAGCGATTGGATGTTGTCCCGAGCTTCGA
GGGGCAACGACATAGAGTTGTTCGTCTCTGCTGCTGCTGCGCGTGATGGA
ACTGCTGGTGTCGGGCACACTACCATCGGAAAAGCGATTTTTTTCTTCGA
ACATATTGGCAACGACCAAAGAAGCGGCGAAGATGGCCATATCGAAGAAG
GGGTCGTTACTGTCTGGGTCGCCGTGTTGAAGTACGTGACGGCTGGTAGG
GGTAACCTACGGAAGGAAGATACGGTAACGGGCTTCGACGTCTTTATGCT
CCGCAGCAAGCTGTCCTTCTTCCCTGTCGCAGCCATACGACGAGTCGTGC
ATATCGTGCACGACTGCCCTGCTACAGGAGCTTCTGCATGTGGTCTGGTC
AGCGACGGCAACAACCGCTCAGTGTGGCAGTGTAAACTGGACAAGCGATC
GCGCTACCTCCTCAACGGCTACTTCCACAGCATCGTGCGTGACCCCATTG
TATTCGCCACCTCCCCTCCTCCCAGACAACCCTATTGTTATATCCTATAA
GCCATGAACGGCACGCTGTGGTTTGCAAATAACACAAAATTTTACCCCCG
CTCCCCGCTCTGAAACCAAGTGCGGTCGAAAGTCGTCAGCGATGGGGAAC
ACATGTTCCGACGGGACGCAAAAGTAAAATCCAATCATCTCATTTTTTAG
TTTCATGCGTACTTGAACGAACACCGAGACCGCTGATCGGTTGTTTCTCC
GTGGTAGAATGCGCCAAAGACTTTTAAAAGGGGCTGTGATATCCGGAAGA
GTAATATTCACACTCCTCGACGACCCCCCCCCCCCCCCCAAACTACAACT
GCCACCGACTTCCACCGATATTTAGCAGGTCATTTTCAACCCGCGTTCAG
GAATGGGGCAGCCGGAAGCAGCGGTAGTTGAGATACCGACGTCCTGCTCG
TTGTAGGCGGAAGGGCGGGTGTAGCGGCGGGGCTTCTTTCTACCGATGCG
TTTTGGATGGATGTTGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig162:468925..470044-

>mRNA_P-littoralis_Contig162.72.1 ID=mRNA_P-littoralis_Contig162.72.1|Name=mRNA_P-littoralis_Contig162.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig162:468925..470044- (Pylaiella littoralis U1_48)
ATGGGGCTATCCCACAACACCGTGTGGTGCTTCAACCATTGGGGGCAAGC
ACCGGAAGCCGCCAGCGGCGGCATGGGCAAACTCCGTGGTGGCTCGGTGG
AGGATGCCGGTCGTATGCCCAGCGATTGGATGTTGTCCCGAGCTTCGAGG
GGCAACGACATAGAGTTGTTCGTCTCTGCTGCTGCTGCGCGTGATGGAAC
TGCTGGTGTCGGGCACACTACCATCGGAAAAGCGATTTTTTTCTTCGAAC
ATATTGGCAACGACCAAAGAAGCGGCGAAGATGGCCATATCGAAGAAGGG
GTCGTTACTGTCTGGGTCGCCGTGTTGAAGTACGTGACGGCTGGTAGGGG
TAACCTACGGAAGGAAGATACGGTAACGGGCTTCGACGTCTTTATGCTCC
GCAGCAAGCTGTCCTTCTTCCCTGTCGCAGCCATACGACGAGTCGTGCAT
ATCGTGCACGACTGCCCTGCTACAGGAGCTTCTGCATGTGGTCTGGTCAG
CGACGGCAACAACCGCTCAGTGTGGCAGTGTAAACTGGACAAGCGATCGC
GCTACCTCCTCAACGGCTACTTCCACAGCATCGTGCGTGACCCCATTGTA
TTCCAGGTCATTTTCAACCCGCGTTCAGGAATGGGGCAGCCGGAAGCAGC
GGTAGTTGAGATACCGACGTCCTGCTCGTTGTAG
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