mRNA_P-littoralis_Contig162.66.2 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig162.66.2 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE) HSP 1 Score: 660 bits (1702), Expect = 2.380e-217 Identity = 477/794 (60.08%), Postives = 546/794 (68.77%), Query Frame = 2
Query: 212 MRSSFRGDTCGVL--GCCLAAAVAAALLSAVPGGEAFLCPAAVQQQGVPSSRGTWTAGMAQKQRLSATGRERIGCLSAGDGEGVPAVPSRDENAS----REGPFRRARAFIGRKAATAAAVSTLVSAGAPGPAEALFGRG--KAPEMPSVPAIQQRLEDAGEELTETAEGMFEEAGEV------AGEALSEMSEAADALETPTEAXXXXXXXXXXXSMASAVDAATGADKAAVAAKAEGRAV---STIDMAKDMILENKEVAAVVLVGVAGSRYMLLKAGGKPGRSRGGRXXXXXXXXXAAPKSPYAGIGQPRVSPEVAAADLKKKTDSLKNVNFDVDVDLFGDAVSDLPARPPXXXXXXXXXXXXXXEAMKGVRPSSLFFPATFLPSDVFAVEARAATAGSTESAIETAAEPATTAATPEPSXXXVXXXPAPSTS--------YSKKPEKSGKRKGAPILNLFKRDAGPQRATTLEEALTAENSDEAVFRQALAAVLARSAPAGEFNVKEPEPLLDAVVAPENDLEGEEGEKAASASRIAALNTLMEAAGLSLKEGADVVADVVNAMVVGLTDAAVTSRSDESMATASDALLQYMDEAGALFVALCPGIALDPQIKYNGTYKRGKLEKVFEAAAKNTLKTMGDEGQMVSLDRLQDLFSIKKAKADSITQKIMMDLMMKMMSEGGGEXXDAEGLEKMMAAMGGAEXXXXXXXXXXMGAGRTPEDHKREVEALKAMVDSGECPKEEVDALRKMYSDAGMDIDTLVNDPMMESSMDSDAKEVVVLLRKLLALWPKK 2518
MR +FR G + G CL V +LS PGGEAFL PAAVQ+ G +S G +QR + R IG ++AG EG+ V SRDEN+S GP R R+ GRKAATAAAVS LVSAGAPG AEALFGRG APEMPSVPA++Q+LE A + E EG+ E A V EA + LETP + A + + +GRAV ST+ + KD+++ENKEV AVV+ GV GSRY+L++ GGK XXXXXXXXX APKSP AGIGQPRVSPEVAAADLKK+ DSLK+ NFDVD+DLFGDAV+DLPARPPXXXXXXXXXXXXXX XXX XXX YS KPEKS KRK PIL+LFKRD GPQR+TT++EAL+ E+ + A FR+ LAAVLA SAP GEF+V+EP L +A + PE D EGE G KAA+ASR++AL LME AGLSL++GA+VVADVVNAMVV LTDAAV+S+ +S A AS+ALL+YMDEAGALFV LCPGIALDPQIKYNGTYKRGKLEKVFEAAAK+TLK+MGDEGQM+SLDRLQDLFSIKK+KADSITQKIMMDLMMKMMSEGGGE DAEGLEKMMAAMGG E XXXXXXX GAGR+PEDHKREVEALK MV+SG+CPKEEVDALRKMY+DAG+DIDTLVNDP ME+SMD+DAKEVVVLLRKLL LWPKK
Sbjct: 1 MRPAFRDAMGGGVLGGTCLMVIVM--VLSVAPGGEAFLHPAAVQRHGAAAS------GKMLQQRPAVKTRG-IGSMTAGVEEGMLDVASRDENSSVTRSTPGPLLRVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGGRSAPEMPSVPALEQQLETA---VGEVVEGVGEIASAVDKXXXXXXXXXXXXEEALEGLETPEAGSEGGDAVGGLVTTTPATE------------EDQGRAVGGVSTVGIVKDLVVENKEVVAVVVAGVIGSRYLLVQRGGKXXXXXXXXXXXXXXXXXXAPKSPLAGIGQPRVSPEVAAADLKKRADSLKSANFDVDLDLFGDAVADLPARPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSIKPEKS-KRK--PILSLFKRDTGPQRSTTMQEALSDESPNVADFRRGLAAVLAESAPKGEFDVEEPTLLAEATIVPE-DFEGEAGVKAAAASRMSALKELMETAGLSLEQGAEVVADVVNAMVVKLTDAAVSSKGVDSTAAASNALLKYMDEAGALFVTLCPGIALDPQIKYNGTYKRGKLEKVFEAAAKSTLKSMGDEGQMMSLDRLQDLFSIKKSKADSITQKIMMDLMMKMMSEGGGEDGDAEGLEKMMAAMGGMEGXXXXXXX---GAGRSPEDHKREVEALKQMVESGDCPKEEVDALRKMYTDAGLDIDTLVNDPNMEASMDADAKEVVVLLRKLLDLWPKK 763
BLAST of mRNA_P-littoralis_Contig162.66.2 vs. uniprot
Match: A0A835Z1E0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E0_9STRA) HSP 1 Score: 175 bits (443), Expect = 8.250e-41 Identity = 139/361 (38.50%), Postives = 191/361 (52.91%), Query Frame = 2
Query: 1481 PEKSGKRKGAPILNLFKRDAGPQRATTLEEALTA-ENSDEAVFRQALAAVLARSAPAGEFNVKEPEPLLDAVVAPENDLEGEEGEKAASASRIAALNTLMEAAGLSLKEGADVVADVVNAMVVGLTDAAVTSRSDESMAT-ASDALLQYMDEAGALFVALCPGIALDPQIKYNGTYKRGKLEKVFEAAAKNTLKTMGDEGQMVSLDRLQDLFSIKKAKADSITQKIMMDLMMKMMSEGGGEXXDAEGLEKMMAAMGGAEXXXXXXXXXXMGAGRTPEDHK--REVEALKAMVDSGECPKEEVDALRKMYSDAGMDIDTLVNDPMM-ESSMDSDAKEVVVLLRKLLALWPKK*SVRSHFACH 2548
PE K+ G + LFK+ A R TT+ +A++A E F QALA L+ AP G F +P L D E D G EG L L+ ++G + + AD +ADVVNAMVVGLTDAAV + DE A LL YMD AG F A+CPG+ALDP ++YNG K+ +LE+++E + + T +RL+D+ +IK++KA S+ QK++M+++ KMM EGG XX G G PE + ++EA KAMV G ++EV LRKMY D GMDID +V + ES+MD +AKE+ LLR++L P + H A H
Sbjct: 237 PEPPKKKLGLGLGGLFKKGAASNRPTTIGDAISAQEGGGLEGFSQALAGYLSHFAPPGSF-APDPTFLRDG----ELDRAGAEG----------TLLELVSSSGATSLQVADAIADVVNAMVVGLTDAAVAAIKDEDRCRQALSDLLLYMDNAGGTFAAVCPGVALDPPLRYNGAAKKRQLEELYENFTR-AMVTDQSADMSARQERLRDMLNIKESKARSLEQKVLMEVVQKMMKEGGDXXXXXXXXXXXXXXXEG---------------GGMPEGPEVAAQLEAFKAMVKDGNVSRDEVTELRKMYKDMGMDIDQMVAESAAAESTMDREAKELYSLLRQMLEQHPLAELLHQHEAGH 566
BLAST of mRNA_P-littoralis_Contig162.66.2 vs. uniprot
Match: H6WBA5_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA5_VAULI) HSP 1 Score: 125 bits (313), Expect = 1.210e-26 Identity = 87/264 (32.95%), Postives = 145/264 (54.92%), Query Frame = 2
Query: 1760 ALNTLMEAAGLSLKEG---ADVVADVVNAMVVGLTDAAVTS--RSDESMATASDALLQYMDEAGALFVALCPGIALDPQIKYNGTYKRGKLEKVFEAAAKNTLKTMGDEGQMVSLDRLQDLFSIKKAKADSITQKIMMDLMMKMMSEGGGEXXDAEGLEKMMAAMGGAEXXXXXXXXXXMGAGRTPE-----DHKREVEALKAMVDSGECPKEEVDALRKMYSDAGMDIDTLVNDPM-MESSMDSDAKEVVVLLRKLLALWPKK 2518
A+NTL+ + S + A+ +A + N M+ L DAAV + +S + A L+++M +G++F A+CPGI LDP ++YNG K+ +LE+++ A+ ++ + E M ++DL IK+ KA +I QK MMD + M+ +GGG+ E + ++ +G G PE + + ++E+ K +V G+ +EEV LRKMY + GMDID LV + E MD+ +E+ LLR++L+ +P K
Sbjct: 166 AINTLISLSDSSKENSNSVAEAIACIANPMINELVDAAVAANQKSPPACEEALMGLVRFMKVSGSVFEAVCPGIVLDPPLRYNGGSKKKQLEEIY-ASLSASISSENSEELMSFQKEIRDLLGIKEFKAKAIEQKAMMDALQNMVKDGGGDGSSQEQMAALLQNIGA-------------NGGPEPEMPSGPEMEAQLESFKNLVKGGQVTEEEVKELRKMYKEMGMDIDKLVKESEGNEGMMDAQGRELFDLLRQMLSQYPLK 415
BLAST of mRNA_P-littoralis_Contig162.66.2 vs. uniprot
Match: B7G0P6_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G0P6_PHATC) HSP 1 Score: 97.4 bits (241), Expect = 1.280e-16 Identity = 87/251 (34.66%), Postives = 140/251 (55.78%), Query Frame = 2
Query: 1787 GLSLKEGADVVADVVNAMVVGLTDAAVTS---RSDESMATASDALLQYMDEAGALFVALCPGIALDPQIKYNGTYKRGKLEKVFEAAAKNTLKTMG----DEGQMVSLDRLQDLFSIKKAKADSITQKIMMDLMMKMMSEGGGEXXDAEGLEKMMAAMGGAEXXXXXXXXXXM----GAGRTPEDHKREVEALKAMVDSGECPKEEVDALRKMYSDA-GMDIDTLVNDPMMESS-MDSDAKEVVVLLRKLL 2500
GLSLKE A+V A+VVN M++ + D A TS + D+ A + ++ +M+ A +L+ ++ G+ + P + Y G+ + KLE+++ A A + + M D V+L LQD+F I + KA+ + K + MM M+ +G EG+E M XXXXXXXXXXM G G PE K + +LK + DSG P +E+DA++ + +A G ID ++ D + + SD KE++ L++ +L
Sbjct: 700 GLSLKESAEVFANVVNCMLIDIVDLASTSLKEKDDKLTVDAINIVVDFMNHAASLYDSVAEGVVITP-VTYGGSLSKSKLEQMYTAYAVSGMTNMANLSDDFENRVAL--LQDVFQINEKKAEGLMMKAVQKNMMNMLKDG-------EGMEGMEXXXXXXXXXXXXXXXXXMMGPDGEGPNPEQLKEMLLSLKQLKDSGSIPPDELDAVKSQFKEAFGSGIDEVMKDADAQGGELTSDDKELLDLMKSIL 940
BLAST of mRNA_P-littoralis_Contig162.66.2 vs. uniprot
Match: A0A8J2S851_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S851_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 2.680e-10 Identity = 86/258 (33.33%), Postives = 136/258 (52.71%), Query Frame = 2
Query: 1775 MEAAGLSLKEGADVVADVVNAMVVGLTDAAVTSRSD---ESMATASDALLQYMDEAGALFVALCPGIALDPQIKYNGTYKRGKLEKVFE-------AAAKNTLKTMGDEGQMVSL---DRLQDLFSIKKAKADSITQKIMMDLMMKMMSEGGGEXXDAEGLEKMMAAMGGAEXXXXXXXXXXMGAGRTPEDHKREVEALKAMVDSGECPKEEVDALRKMYSDA--GMDIDTLVNDPMME-SSMDSDAKEVVVLLRKLL 2500
++AAGL L A+ ADVVNA ++ L DAAV S ES+ S+ +++ AG F L + Y G R +L+ +F AA + +EG+ V L D LQ LF I +AD + Q+++ L+ +MM + G D EGL +AA+ G EXXXXXXXXXX P + + ++ AL+ +VDSG+ ++ ++KM++++ G D+D + + +D+ A+E + LL KL+
Sbjct: 321 LQAAGLGLDAAANAFADVVNAGLIPLVDAAVPSLKQGDAESLPPLSN-VVRVAAVAGLAFEELGLVPFAGTPVVYEGRASRSQLQSLFARYAAAGVAAGLEEEGGVTEEGEAVDLAAVDTLQALFQISDKQADRLAQQVVTKLVQQMMEKAG--DGDQEGL---LAALAGQEXXXXXXXXXXX----XPTNPQEQMAALRELVDSGQLTDDDKREIKKMFAESLGGGDVDEKIREANKNRDQLDAQAREALDLLNKLM 568
BLAST of mRNA_P-littoralis_Contig162.66.2 vs. uniprot
Match: F0YB97_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB97_AURAN) HSP 1 Score: 70.5 bits (171), Expect = 2.400e-8 Identity = 78/251 (31.08%), Postives = 126/251 (50.20%), Query Frame = 2
Query: 1784 AGLSLKEGADVVADVVNAMVVGLTDAAVTS--RSDESMATASDALLQYMDEAGALFVALCPGIALDPQIKYNGTYKRGKLEKVFEA-AAKNTLKTMGDEGQMVS-------LDRLQDLFSIKKAKADSITQKIMMDLMMKMMSEGGGEXXDAEGLEKMMAAMGGAEXXXXXXXXXXMGAGRTPEDHKREVEALKAMVDSGECPKEEVDALRKMYSD--AGMDIDTLVNDPMM-ESSMDSDAKEVVVLLRKL 2497
AGL E A A+VVNA++V L DAAV S RSD ++ AG +F L + Y G + +L+ +F AA + ++G + +D LQ +F+I +AD + Q+++ L+ +MM E AE E ++ A+ GA XXXXXXXXXX P D + ++ AL+ +VDSG+ ++ ++KM+++ G D+D + + +D A++ + LL KL
Sbjct: 718 AGLDKAEAAATFANVVNAVLVALVDAAVPSLKRSDAESLPPLQKVVALTAAAGGVFEELGLVEYAGTPVVYEGRASKSQLQSLFSRYAAAGVAAGLSEDGDATAAAADVAMVDTLQAIFAISDKQADRLAQQVVTKLVQQMM-----EQAQAEDPEGLLEALAGASXXXXXXXXXXX---XDPADVEGQMAALQQLVDSGQLGDDDKREIKKMFAEQLGGGDVDEAIRQANANKDQLDPQARQALDLLNKL 960 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.66.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig162.66.2 >prot_P-littoralis_Contig162.66.2 ID=prot_P-littoralis_Contig162.66.2|Name=mRNA_P-littoralis_Contig162.66.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=777bp MMHNNKIMRSSFRGDTCGVLGCCLAAAVAAALLSAVPGGEAFLCPAAVQQback to top mRNA from alignment at P-littoralis_Contig162:391724..428541+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig162.66.2 ID=mRNA_P-littoralis_Contig162.66.2|Name=mRNA_P-littoralis_Contig162.66.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=36818bp|location=Sequence derived from alignment at P-littoralis_Contig162:391724..428541+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig162:391724..428541+ >mRNA_P-littoralis_Contig162.66.2 ID=mRNA_P-littoralis_Contig162.66.2|Name=mRNA_P-littoralis_Contig162.66.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2331bp|location=Sequence derived from alignment at P-littoralis_Contig162:391724..428541+ (Pylaiella littoralis U1_48)back to top |