prot_P-littoralis_Contig162.62.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig162.62.1
Unique Nameprot_P-littoralis_Contig162.62.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length224
Homology
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BLAST of mRNA_P-littoralis_Contig162.62.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 2.870e-52
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = 0 
Query:  109 AKRVEIPLEVFPAVFQYMDASTLCSVSSVSKEWRRQGNDDQYWGRLCRTRFNVTPDAFAPPPDPIKRLYQLQYGSFKAMCRGCGYGSRFRSAAPPTISAHTSAQLLMGLMMSN 221
            A+RV+IPLEVFP  FQYMDA TLC+VSSVS+EW++QGNDDQYW  LCR RFNV PDAFAPPPDPIKRLYQLQ+GSFKAMCRG        S APP I  HTSAQLL+GL+ SN
Sbjct:  150 ARRVDIPLEVFPIAFQYMDALTLCTVSSVSREWKKQGNDDQYWRHLCRARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRG-DRRHGLHSGAPPVIPRHTSAQLLVGLLASN 261
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.62.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMG4_ECTSI2.870e-5274.34F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 110..187
e-value: 7.6E-10
score: 40.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
IPR001810F-box domainPFAMPF12937F-box-likecoord: 114..156
e-value: 1.5E-7
score: 31.1
IPR001810F-box domainPROSITEPS50181FBOXcoord: 108..154
score: 10.663223
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 114..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:357098..361319 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.62.1mRNA_P-littoralis_Contig162.62.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig162 356980..366735 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig162.62.1 ID=prot_P-littoralis_Contig162.62.1|Name=mRNA_P-littoralis_Contig162.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MVPYTASSSRSSPPSSSLSSSGQRQQRDSSTTVVSRPPPPPVPPLLALPA
SVRGEYFFSSPCSSSSSSPSTSSPSRHFFKCCSSSSPCSSNDSRAGATRS
GGGGGGSIAKRVEIPLEVFPAVFQYMDASTLCSVSSVSKEWRRQGNDDQY
WGRLCRTRFNVTPDAFAPPPDPIKRLYQLQYGSFKAMCRGCGYGSRFRSA
APPTISAHTSAQLLMGLMMSNAM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf