mRNA_P-littoralis_Contig162.12.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig162.12.2
Unique NamemRNA_P-littoralis_Contig162.12.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig162.12.2 vs. uniprot
Match: D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 2.820e-71
Identity = 117/168 (69.64%), Postives = 134/168 (79.76%), Query Frame = 3 
Query:  153 MGDWNADPADV-RDPYAPDCGSRAAEGFYVGALYGVVWGVVGRLSSSPILPSTPTIRALKTTPVPESHPA-GLWNQGATRHLRTLGRGAAGYGMAAGSTAGVFGVFVGMVNAGTCACERFRGRKDWFNNMCGGAVAGLSVALLSRHTRTPQMIAAHIAGAAAITSIVA 650
            M DWN +P ++    YAPDC SRAAEGFYVGALYG VWGV+GR + +P LPSTP +  LK     ++ PA GL  +G +R +R  GRGAAGYG+AA STAGVFGVFVGMVNAGTC CER RG+KDWFNN  GGA AGLSVALLSRHTRTPQM+AAH+AGAAAITS+VA
Sbjct:    1 MEDWNVEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPSTPAMGELKPPSGLQAQPAPGLETRGVSRQVRAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.12.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME6_ECTSI2.820e-7169.64Similar to mitochondrial import inner membrane tra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:66142..70755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3712.Bo4g098450.1
PFAMsTim17
Model size1045
Max annot lvl35493|Streptophyta
KEGG koko:K17790,ko:K17795
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008104,GO:0008150,GO:0009526,GO:0009527,GO:0009536,GO:0016020,GO:0019867,GO:0031090,GO:0031967,GO:0031968,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042170,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0051179,GO:0051641,GO:0070727,GO:0098588,GO:0098805
Exons5
Evalue0.000347
EggNOG OGs2BME1@1|root,2S1KR@2759|Eukaryota,37VET@33090|Viridiplantae,3GJTY@35493|Streptophyta
DescriptionOuter envelope pore protein 16-4
Cds size528
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.12.2prot_P-littoralis_Contig162.12.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig162 66507..68744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789781.0081222-UTR-P-littoralis_Contig162:66141..665061680789781.0081222-UTR-P-littoralis_Contig162:66141..66506Pylaiella littoralis U1_48UTRP-littoralis_Contig162 66142..66506 -
1680789781.056658-UTR-P-littoralis_Contig162:68744..688121680789781.056658-UTR-P-littoralis_Contig162:68744..68812Pylaiella littoralis U1_48UTRP-littoralis_Contig162 68745..68812 -
1680789781.0672588-UTR-P-littoralis_Contig162:70671..707551680789781.0672588-UTR-P-littoralis_Contig162:70671..70755Pylaiella littoralis U1_48UTRP-littoralis_Contig162 70672..70755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789781.0201442-CDS-P-littoralis_Contig162:66506..666751680789781.0201442-CDS-P-littoralis_Contig162:66506..66675Pylaiella littoralis U1_48CDSP-littoralis_Contig162 66507..66675 -
1680789781.0288458-CDS-P-littoralis_Contig162:67234..674311680789781.0288458-CDS-P-littoralis_Contig162:67234..67431Pylaiella littoralis U1_48CDSP-littoralis_Contig162 67235..67431 -
1680789781.0385993-CDS-P-littoralis_Contig162:67934..679961680789781.0385993-CDS-P-littoralis_Contig162:67934..67996Pylaiella littoralis U1_48CDSP-littoralis_Contig162 67935..67996 -
1680789781.0477183-CDS-P-littoralis_Contig162:68644..687441680789781.0477183-CDS-P-littoralis_Contig162:68644..68744Pylaiella littoralis U1_48CDSP-littoralis_Contig162 68645..68744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig162.12.2

>prot_P-littoralis_Contig162.12.2 ID=prot_P-littoralis_Contig162.12.2|Name=mRNA_P-littoralis_Contig162.12.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MGDWNADPADVRDPYAPDCGSRAAEGFYVGALYGVVWGVVGRLSSSPILP
STPTIRALKTTPVPESHPAGLWNQGATRHLRTLGRGAAGYGMAAGSTAGV
FGVFVGMVNAGTCACERFRGRKDWFNNMCGGAVAGLSVALLSRHTRTPQM
IAAHIAGAAAITSIVAVATGPPVGS*
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mRNA from alignment at P-littoralis_Contig162:66142..70755-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig162.12.2 ID=mRNA_P-littoralis_Contig162.12.2|Name=mRNA_P-littoralis_Contig162.12.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4614bp|location=Sequence derived from alignment at P-littoralis_Contig162:66142..70755- (Pylaiella littoralis U1_48)
CGGACCGGCTGCGTGTGGCGTTGGAAATTTCGGCGAAGTGAACGCAGCAG
CAGAAGAGAGCAACGAAAAGCATCGTTGTTTCAGGTACGGCATTATGGGA
TGTTCTCCCTTCCATACAGAGTGACTCTATGATCTACGACGCTGCTGCAG
AGAGTACAGCAGTTGTCCAGCACCGACAATAGCACCTGCCTGGCACAGCA
GTAGTAGAATGATACTGCTGTACAGCAGCTGCTACGAAGTATTTCGAAGT
ATATACTACGTGTGGAGGAGAGCGGCAGTAGCGATGCATTGTCGGCAGCA
GCGCGCACACACGGGGGGGCAATATCGTCATCTAAGTAGCAGTAGCGACG
CATTGTCGGCACCATCGCGCAGACACGGGGGGGCGATATCGTCACCTAGG
TTGCTGTTCCAATCGGCGCTTTGCCGTTGCCTTGGTCTCCTTTCCCCGGG
GGGGGCACAGTAGCAGTGGAAGCGCCCTCTCCATGTGACATCTGAGCATG
CTGTGGCATTTTCTGCTGTGTACGTACTACGAGCAGGTCACGATACGCAG
CATCTGATTGGCACCAGCAGCAACTTGTTGCTGGTTGCCCTCAAGGTGTT
CCATTCAACTTTGCCGGGGTTGTCGTAGAAAGCGCACAGCGGCACGTACT
ATCTGCCGCATGATTTAGCACGCTTCGTGTCTGTGTTCCCGTTGTCTTTC
TATTCACGCTGATCGCCTCCCCTTAACGAGTCCTACGAGTATGCACGTCG
TGGATAGGCGGTACTGGGTGCACGTCGAATGGAATCGCCGTCCTCCTATT
GAGTTGAAAAAGTGCTGCGTGGAACGGCGGTACTCCGTACATGTACACGA
CTTTACGATCTGCCCTCCTACCTTCCGAGGCGAAGGGTTAGGGTTTCTAC
TGTACATGGGGGCGTTTAGGCAGCAGCGCACCGGCATATATATTTTCGGG
TGCGTCTCACTCAGTCTCCCTCTGGGTCTGCCTGCCGTTTTTTCGGAGCT
CGATGTGTTCTGTGAGCAAGACGAGCATACGTGCCGAAATGAAGGAGATG
GCGCTGGAAAGGAAAAGTCCCAACCGAGAGCTTTCCGTCACCGTGTGCAT
TATTTGGGAACTCTGGCACCGTGTTTGTTACGAAGTACTGGATAGTCTTC
GAAGTGTACCCAACGTTAGACTAAGAATGAGCGGGGTAGGGTATACAACC
TACTGTTTTACCTTTTGGGCGCATACTTGTACGACACCGTAGGACCTCCT
GTACCTTCTACTACTCCACAGAGTAGGAAAAGTTTCGTTGCCGAAAGAGG
TTGAATCGATTGATTGGCATTGAATTAATGGAACCGTCCCGGCGAGAAGT
ACGCTAGCTTTCCGGCAACGTACCATTTGGTACTCTGGTTCCCTGTTTGT
TTTGGATGACAGTCGATCTTTGAATATCGATCCAGGGCGCCCCGTGTTTT
TTTTAGCGGCCGACGGCACGTGCCCCCGCCCGGGGCAAAATTAGATCTAG
TTCTGCGCAGGGGACAAACCACAAGAGGGGCGTCACGCGCACGAACGGCG
TCACGCCAATGGCCCAGGCATTGACAGATAAGCTCAATTGAAAGGTGTCG
CGTGTGGAAGTGAGGGAAAGTCAATGCGGGGTGTGTTTAATCTTGAACGA
CGTTGCACACACGAGTTGCGAGGAAAAGAGCATCAGTATTCAAATACCTG
GGGCTGGCCTGGGTACAGCTGTCTGAGGCGTATCGATGCTTGTTTCTCGC
CTGCCAACACTTCACTTCGAAATGTTCAAACTTCCGTCGTGAAATGGGAG
TGCAAGGGAATGTTGAGTTTGCCCCCCCTTCTTCCCAATTACAGTAGGTC
ACGGGGGTGCCAGTGATGCAGCCACTCGCGTCTCACCCTCAAAAGGTATA
CTAGTGCGCAAACACATCCCATCGACCGCATTTCCCACGCCAGCAGAGAG
AGGCGGGTGGAAAGGCTTGCTCCGCCTGGTGTGGAGCTCGACAGGAACAA
AGAGCGGCAGCATGGGTGACTGGAACGCAGACCCAGCAGATGTCCGAGAC
CCTTACGCCCCGGACTGCGGGTCGAGGGCTGCGGAAGGGTTCTACGTCGG
GGCACTGTATGGTGCGTTTCATGTGGTCGACGGTACGGTGCTGGATGTGC
AGTTTGTAGCACTACACTTGTTTGTCGCACGCTTTGTCCTGAGCAGGAAA
TACAGCTGGTATGATAGCGTACCGCAAACGTCTGGGTCGTTGAAACGTCT
CGCGCGGTACGATACTGCTGTACGTGGCTTTCCGAAGACGAACCGTCAAG
GAGATGGCGGCCTTCTTCGGTGTAGATCAACAACATTGAAAAATTGGGCG
AAGCGTGCCCCGACAACGCTGTGGAGCCGATTCCCGAAAACGGGTGCGGA
AGCAGGCATGGGCCCCGTGCTTCCTTCTCGCTGTACAACCCTCCCGTGCC
TGCCGCCGCCAACACATGCACCCCCCATGTAACGGCAGGCACGACCACCA
TCTATGCTCTACTTCCGTCAGAGAATCCTGTCTCGTCGTTGTTTTTCCCT
GCCTCTCCTTGCCGCTAGTATCCAGCTCAAGTTTTATATTTCTCGGCCTG
TCTTATCTATCCAACGAGCATGGTGAACGTTTTTCAGGAAAGCCTCGCCT
GAAGTTGTCTACGTGAAAGTTTACAGAGTTTTGGGTTCGTGGGGTTCGCC
GTCAGTCATCGAAGTGCTCCGCGTCCTGTCTCTTTCGGCCGAATACCACC
TACTTTCAGGGGTGGTGTGGGGAGTGGTCGGGCGCCTCTCTTCTTCTCCC
ATTTTACCGTCAACACCCACGGTGAGTAAATACCACCCTTACTGCTTGCT
GATTTCACCCGACCGTCAGTATTGCTGGAGCGCGAATACCCGAATACGGG
TTTCCATTTTCGGCGTTCTCGAAACCGAAATAAAGTGTGTCGTCATGGCG
AAGATAAAAATTATTCCCCTCAAGGCGACGTCGTTGGTTTTTCTGGTATC
GCGACTGCACAGCTGGAAAGGAACGCATCAGTACTTATTTCGCGTACAGC
AGTAGAGTTTCAAAAGGTGCAGGCCTTGGCTGCTCGTAAGCTCCTGGCTT
GTTCGTGTATTTTGAAAAAGGATGAGGATAGCTGCGGTCGCCAGTGGGCA
GAATCTTGACGTACCTATCGGGAGGGAACATTAACATTCTTTCCATGTTT
TCGCAGCGGTTTCATTGCCCCATCGACCCCGCACACCTTCCTGTCCCTTT
TTCTAACCCAAAGCCACGATCCCCTCTACCCCCTTCTTCACTGCAACGAT
GACCCCCCCCCCCCTCTTTCGCAGATAAGAGCTTTAAAGACGACGCCGGT
CCCGGAATCACACCCTGCTGGGCTCTGGAATCAAGGGGCGACAAGACATC
TTCGCACCCTCGGAAGGGGTGCAGCGGGGTACGGCATGGCCGCAGGATCC
ACGGCGGGCGTGTTTGGGGTGTTCGTGGGCATGGTGAATGCCGGGACGTG
TGCATGCGAACGCTTCCGAGGGTGGGTGGTGTTGCGATTGTGCGATCGTA
CGCTCGTACGTACAAGTATCACACGTGTGTTGAAAATAAAAATGGATCGT
TTCGATCGACGCTTGTGCTGTACGGCCCTGCTTTTGGATATGATACGTAG
AGCAGCACATCGAGGATGACGTGTGATGTTTACGTTCGTCAGTTTTTTTG
CGGTTACACCAGGTGGCTTGACGTGGTCGTGGGCATCGTGAACACCTGTA
CCTGCGTGCGTTACGTGTCAACGTTTGAGGGTGTGCACTGGCAGAGGCAA
CCGTACAACCAGCACCCACACTTTTCGGCACGAAAACACTCCACACCCTG
CTAAATATATCTTGACGTCAAATTTACCGGTTGTTTGACTTGGGAATTGC
CTAACCTGCGCATCTCAGGCGGCTGTGCCCGAAAATGCTCGTGATAAACC
AAAGATTGCGAATCGTTGTCTTCGCCGTTTTTCCGGGAAGGACGTTTTTG
TCGCTTTGCCACTTCATTTACTCCGCCCTGTGTGTATTTTGCTTACCTTC
ACGGTCGTTTGTGTGTTCACGCTGTGGCAGGCGAAAGGACTGGTTCAACA
ATATGTGTGGGGGCGCGGTGGCGGGACTGAGCGTGGCGCTGCTCTCCAGA
CATACTCGTACACCCCAAATGATTGCGGCCCATATCGCGGGAGCCGCCGC
GATAACGTCGATTGTTGCTGTCGCGACCGGTCCACCAGTTGGCAGCTAGG
AGTAATTTAGCTTGCGTATGAACGACAAGTAGATCTGTAATTCATCGGTG
CAACAAAGCTTTTTTTTTAAGCATGAAATAAACTTCTTCACTCTTGGGAA
TGGAAAACGACTATTTCGCGAGTGGTAGAAACACATTCGGCTTAATAGTA
GTCGACGAAGGTACGGGACAGTTGACCTCTCGTCGCGGTAAAAAGCTGAA
ACGCAAGAAAGACAAGCACTGCAGAAGTTTGGTGAAGGAAAAAAAAATCC
TGTCTGTCATGACCCCGGCTGGTGCGCCCACTTCATACCGAAAGAAAGGT
GTAGACTGGCGCCCGGAATAAATGAAATGATAACAGAAGCACTCTTCGAA
ACGATGCAACCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig162:66142..70755-

>mRNA_P-littoralis_Contig162.12.2 ID=mRNA_P-littoralis_Contig162.12.2|Name=mRNA_P-littoralis_Contig162.12.2|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig162:66142..70755- (Pylaiella littoralis U1_48)
ATGGGTGACTGGAACGCAGACCCAGCAGATGTCCGAGACCCTTACGCCCC
GGACTGCGGGTCGAGGGCTGCGGAAGGGTTCTACGTCGGGGCACTGTATG
GGGTGGTGTGGGGAGTGGTCGGGCGCCTCTCTTCTTCTCCCATTTTACCG
TCAACACCCACGATAAGAGCTTTAAAGACGACGCCGGTCCCGGAATCACA
CCCTGCTGGGCTCTGGAATCAAGGGGCGACAAGACATCTTCGCACCCTCG
GAAGGGGTGCAGCGGGGTACGGCATGGCCGCAGGATCCACGGCGGGCGTG
TTTGGGGTGTTCGTGGGCATGGTGAATGCCGGGACGTGTGCATGCGAACG
CTTCCGAGGGCGAAAGGACTGGTTCAACAATATGTGTGGGGGCGCGGTGG
CGGGACTGAGCGTGGCGCTGCTCTCCAGACATACTCGTACACCCCAAATG
ATTGCGGCCCATATCGCGGGAGCCGCCGCGATAACGTCGATTGTTGCTGT
CGCGACCGGTCCACCAGTTGGCAGCTAG
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