mRNA_P-littoralis_Contig162.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig162.26.1
Unique NamemRNA_P-littoralis_Contig162.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:158890..159431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size542
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789780.2746253-UTR-P-littoralis_Contig162:158889..1590411680789780.2746253-UTR-P-littoralis_Contig162:158889..159041Pylaiella littoralis U1_48UTRP-littoralis_Contig162 158890..159041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789780.2833173-CDS-P-littoralis_Contig162:159041..1594311680789780.2833173-CDS-P-littoralis_Contig162:159041..159431Pylaiella littoralis U1_48CDSP-littoralis_Contig162 159042..159431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.26.1prot_P-littoralis_Contig162.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig162 159042..159431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig162.26.1

>prot_P-littoralis_Contig162.26.1 ID=prot_P-littoralis_Contig162.26.1|Name=mRNA_P-littoralis_Contig162.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MPPTTGTAVTSLFAAGEQVCFDFFFSSPGFTRSRAHCQGLCLRISSNLSW
LASRHDCQAVYRRTSNSERFSIFFHVKKKYLLACLTIITLIPDFRCQSKL
SQRRGGQNMSAWKAAHTSIRGSSFLSSKDC
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mRNA from alignment at P-littoralis_Contig162:158890..159431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig162.26.1 ID=mRNA_P-littoralis_Contig162.26.1|Name=mRNA_P-littoralis_Contig162.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=542bp|location=Sequence derived from alignment at P-littoralis_Contig162:158890..159431+ (Pylaiella littoralis U1_48)
GGGGTCTGCCTGAAGCACTTTTCTAGCCCTGTGGGAGTGGGCGGGGGGGC
CTAGAGACATAGAAGAGGTGCCCCCAGTTTTTCTGATCGATCAGTTTTTT
CGGAAGACAAGAAATAGTTTTTGATTGGTGGGAAATCCCTGGTCGACTGG
TGATGCCACCCACGACAGGCACAGCAGTTACGTCACTTTTTGCAGCGGGT
GAGCAAGTTTGTTTTGACTTCTTCTTTTCTTCCCCAGGATTTACTCGTAG
TCGTGCGCATTGTCAGGGGTTGTGTTTGAGAATAAGTTCGAATTTGTCCT
GGCTGGCAAGCAGGCACGACTGTCAGGCGGTGTACCGAAGGACCTCAAAT
TCTGAACGATTCAGTATATTTTTTCATGTTAAAAAAAAATATTTGTTGGC
ATGTCTCACGATTATTACGCTCATCCCGGATTTTCGCTGCCAATCGAAAC
TCAGCCAGCGGAGGGGTGGGCAGAACATGAGCGCATGGAAAGCAGCGCAT
ACAAGTATCAGAGGAAGCTCTTTTCTTTCGAGCAAAGACTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig162:158890..159431+

>mRNA_P-littoralis_Contig162.26.1 ID=mRNA_P-littoralis_Contig162.26.1|Name=mRNA_P-littoralis_Contig162.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig162:158890..159431+ (Pylaiella littoralis U1_48)
ATGCCACCCACGACAGGCACAGCAGTTACGTCACTTTTTGCAGCGGGTGA
GCAAGTTTGTTTTGACTTCTTCTTTTCTTCCCCAGGATTTACTCGTAGTC
GTGCGCATTGTCAGGGGTTGTGTTTGAGAATAAGTTCGAATTTGTCCTGG
CTGGCAAGCAGGCACGACTGTCAGGCGGTGTACCGAAGGACCTCAAATTC
TGAACGATTCAGTATATTTTTTCATGTTAAAAAAAAATATTTGTTGGCAT
GTCTCACGATTATTACGCTCATCCCGGATTTTCGCTGCCAATCGAAACTC
AGCCAGCGGAGGGGTGGGCAGAACATGAGCGCATGGAAAGCAGCGCATAC
AAGTATCAGAGGAAGCTCTTTTCTTTCGAGCAAAGACTGC
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