mRNA_P-littoralis_Contig162.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig162.22.1
Unique NamemRNA_P-littoralis_Contig162.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:147969..148951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size983
Hectar predicted targeting categoryother localisation
Exons1
Cds size735
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789780.2321606-UTR-P-littoralis_Contig162:147968..1482161680789780.2321606-UTR-P-littoralis_Contig162:147968..148216Pylaiella littoralis U1_48UTRP-littoralis_Contig162 147969..148216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789780.240964-CDS-P-littoralis_Contig162:148216..1489511680789780.240964-CDS-P-littoralis_Contig162:148216..148951Pylaiella littoralis U1_48CDSP-littoralis_Contig162 148217..148951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.22.1prot_P-littoralis_Contig162.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig162 148217..148951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig162.22.1

>prot_P-littoralis_Contig162.22.1 ID=prot_P-littoralis_Contig162.22.1|Name=mRNA_P-littoralis_Contig162.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=245bp
MFWLPLLLSRDDLMFLTDPRIMPRPFASLMLFNPPFRFSQQVVVVVSAFR
PHHMKRSRAPSSVAAAAVAGLSGDSGGGRKTRGAGSRENSGNFSRSANLG
AACPTRSTSGGHSQQQQHEESQASLEVDVGMEDIIHGSSSSSSNRSSAGK
PTLRRRSCRKSPAGNSSSGGGSILADGNNKKQKTGTGTSPQNGPPSPENT
TRKASSRSTTAARSPRSPRSSTAAATANVEANGTGAGGATKASRG
back to top

mRNA from alignment at P-littoralis_Contig162:147969..148951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig162.22.1 ID=mRNA_P-littoralis_Contig162.22.1|Name=mRNA_P-littoralis_Contig162.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=983bp|location=Sequence derived from alignment at P-littoralis_Contig162:147969..148951+ (Pylaiella littoralis U1_48)
CGATACCGCACGCCGGTGTATTGTACGATCTGACGGTTGAATCCCCGCGT
AAAAGAGTCGAATCCTTCGTGATGAACGCATTCACTTAAAGTGCTGCCTG
CTGTTTCTCCGTGCTGCCTACTGTTTGTTGTGCTGTGTGTCGTTCTCTAT
TTTCTGTTTGCTTGACACTCGCTTTTCCCGCTGTTCCTCCACGCATTCCT
TTCTCTGCGGTGTGGTTACTACGCTGCCATCCCGATTCCTGCAATGAAAT
GTTCTGGTTGCCGTTGTTGTTGTCACGTGATGACTTGATGTTTCTTACTG
ATCCACGCATCATGCCGCGTCCATTCGCTTCTCTGATGCTGTTCAACCCT
CCCTTTCGTTTTTCCCAGCAGGTCGTTGTTGTCGTCTCTGCTTTTAGGCC
CCACCACATGAAACGCTCGAGGGCCCCGTCATCCGTAGCAGCAGCAGCGG
TGGCCGGCCTCAGCGGCGACAGCGGTGGAGGCAGGAAAACCCGAGGCGCA
GGAAGCCGAGAAAATTCCGGGAATTTTTCTCGCTCGGCGAACCTCGGTGC
CGCCTGCCCCACCAGGAGCACCAGCGGCGGGCATAGTCAACAGCAGCAGC
ACGAGGAGTCCCAAGCGTCGCTCGAGGTTGATGTTGGCATGGAAGACATC
ATCCACGGCAGCAGCAGCAGCAGCAGCAACCGATCGTCGGCGGGTAAACC
CACCCTGAGGCGCCGATCATGTCGCAAGTCCCCCGCTGGCAATAGCAGCA
GCGGCGGCGGCAGCATTCTCGCTGATGGGAACAACAAGAAACAGAAGACC
GGAACTGGGACCAGTCCTCAGAACGGTCCTCCCTCTCCCGAGAACACAAC
GAGAAAAGCCTCGTCCCGCTCCACCACCGCCGCGCGATCTCCGAGATCTC
CGAGATCTTCTACAGCGGCGGCCACTGCGAACGTCGAAGCTAACGGTACA
GGGGCAGGGGGGGCGACGAAAGCCTCGAGAGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig162:147969..148951+

>mRNA_P-littoralis_Contig162.22.1 ID=mRNA_P-littoralis_Contig162.22.1|Name=mRNA_P-littoralis_Contig162.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig162:147969..148951+ (Pylaiella littoralis U1_48)
ATGTTCTGGTTGCCGTTGTTGTTGTCACGTGATGACTTGATGTTTCTTAC
TGATCCACGCATCATGCCGCGTCCATTCGCTTCTCTGATGCTGTTCAACC
CTCCCTTTCGTTTTTCCCAGCAGGTCGTTGTTGTCGTCTCTGCTTTTAGG
CCCCACCACATGAAACGCTCGAGGGCCCCGTCATCCGTAGCAGCAGCAGC
GGTGGCCGGCCTCAGCGGCGACAGCGGTGGAGGCAGGAAAACCCGAGGCG
CAGGAAGCCGAGAAAATTCCGGGAATTTTTCTCGCTCGGCGAACCTCGGT
GCCGCCTGCCCCACCAGGAGCACCAGCGGCGGGCATAGTCAACAGCAGCA
GCACGAGGAGTCCCAAGCGTCGCTCGAGGTTGATGTTGGCATGGAAGACA
TCATCCACGGCAGCAGCAGCAGCAGCAGCAACCGATCGTCGGCGGGTAAA
CCCACCCTGAGGCGCCGATCATGTCGCAAGTCCCCCGCTGGCAATAGCAG
CAGCGGCGGCGGCAGCATTCTCGCTGATGGGAACAACAAGAAACAGAAGA
CCGGAACTGGGACCAGTCCTCAGAACGGTCCTCCCTCTCCCGAGAACACA
ACGAGAAAAGCCTCGTCCCGCTCCACCACCGCCGCGCGATCTCCGAGATC
TCCGAGATCTTCTACAGCGGCGGCCACTGCGAACGTCGAAGCTAACGGTA
CAGGGGCAGGGGGGGCGACGAAAGCCTCGAGAGGC
back to top