mRNA_P-littoralis_Contig162.80.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig162.80.1
Unique NamemRNA_P-littoralis_Contig162.80.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:477031..478143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons4
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789780.1591148-UTR-P-littoralis_Contig162:477030..4770401680789780.1591148-UTR-P-littoralis_Contig162:477030..477040Pylaiella littoralis U1_48UTRP-littoralis_Contig162 477031..477040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789780.1750698-CDS-P-littoralis_Contig162:477040..4771391680789780.1750698-CDS-P-littoralis_Contig162:477040..477139Pylaiella littoralis U1_48CDSP-littoralis_Contig162 477041..477139 +
1680789780.1849437-CDS-P-littoralis_Contig162:477386..4774891680789780.1849437-CDS-P-littoralis_Contig162:477386..477489Pylaiella littoralis U1_48CDSP-littoralis_Contig162 477387..477489 +
1680789780.1951504-CDS-P-littoralis_Contig162:477696..4778151680789780.1951504-CDS-P-littoralis_Contig162:477696..477815Pylaiella littoralis U1_48CDSP-littoralis_Contig162 477697..477815 +
1680789780.205131-CDS-P-littoralis_Contig162:478026..4781431680789780.205131-CDS-P-littoralis_Contig162:478026..478143Pylaiella littoralis U1_48CDSP-littoralis_Contig162 478027..478143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.80.1prot_P-littoralis_Contig162.80.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig162 477041..478143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig162.80.1

>prot_P-littoralis_Contig162.80.1 ID=prot_P-littoralis_Contig162.80.1|Name=mRNA_P-littoralis_Contig162.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
MEVTALRDALGQHDEEHDSGVSPSPTRMVRLFGAAGEENQAADEEEEEEE
EDSDDAENQRKKQPVSASRGEESEEDNDCMSVQDSDDEEETDEAAVQYMR
GAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF
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mRNA from alignment at P-littoralis_Contig162:477031..478143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig162.80.1 ID=mRNA_P-littoralis_Contig162.80.1|Name=mRNA_P-littoralis_Contig162.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1113bp|location=Sequence derived from alignment at P-littoralis_Contig162:477031..478143+ (Pylaiella littoralis U1_48)
GAGGTGCGGCATGGAAGTAACTGCGCTGCGGGACGCACTCGGACAACATG
ACGAAGAACATGACAGCGGTGTATCTCCTTCCCCAACCCGTATGGTTAGG
TTGTTCGGGGTAAGGTTTTGTTTTGAAAATGTGGGTGTAAAAATTATTGA
GTTGCAGTCCCCGAGACAATGCTATGTAAGCCAAGGCATGGCCCAACTTG
GCGGCCTGACTTTTCGCGTGGTCTCGCCGCACCCCACCTCTCGCCACCTC
TCGCTGCCCAGCAGCTTTATTTTTTGGCCATCGATACCCTTGATCATTAC
TGCCATTGCGCCGTTCTGAACGCTTTTTGCATGATGTCTCGCACACTTGA
TGGCAGGCGGCCGGCGAGGAGAACCAGGCGGCGGACGAGGAGGAGGAGGA
GGAGGAGGAGGACAGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTG
TGTCAGCAAGTATGTTGAAGCCTGGGAGGTTAGAGTCGAATGAGTACGGG
TGACAAAAAAACGGCGTGTTCTTTTTTCCTTCTTTCGTTATCTAGGAACC
ATCGCTTTTCTCTCTTTGCTTTCTCCCACGTCCCCCCGCAAACCTGAACT
CGCCTGACGAGTGTCTTTGAGTCTCACGCTCTCCTCGTTGCGCTTGCGAA
TGCTGATTGGAGCAAGGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTG
CATGAGCGTGCAGGATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTG
TCCAATACATGCGTGGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTG
CATATTGTTGCCTGCTCGCACATTTCAGACATCATGCAGCCAATGTTTCC
TTTTGGTGTGACCTCGCATAGTCAGACTGGCACTTGTTGTTTCACTTGTG
TTTCATCACCATCGCAACGAGAGCCTGTTTGGGATGATATTTTCAATCGC
TTTTATCTTTTGTTTGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATG
CTGGCAAGGTCAACGAGCTGGCCCAGAACATTGCGAACCATATCGAGGAC
GGTCTTCGCGGGGACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGG
GGACGCCCTCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig162:477031..478143+

>mRNA_P-littoralis_Contig162.80.1 ID=mRNA_P-littoralis_Contig162.80.1|Name=mRNA_P-littoralis_Contig162.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig162:477031..478143+ (Pylaiella littoralis U1_48)
ATGGAAGTAACTGCGCTGCGGGACGCACTCGGACAACATGACGAAGAACA
TGACAGCGGTGTATCTCCTTCCCCAACCCGTATGGTTAGGTTGTTCGGGG
CGGCCGGCGAGGAGAACCAGGCGGCGGACGAGGAGGAGGAGGAGGAGGAG
GAGGACAGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTGTGTCAGC
AAGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTGCATGAGCGTGCAGG
ATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCCAATACATGCGT
GGTGCTTTCGAGGATGTTCCGAATGCTGGCAAGGTCAACGAGCTGGCCCA
GAACATTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTG
CCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTC
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