mRNA_P-littoralis_Contig1611.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1611.8.1
Unique NamemRNA_P-littoralis_Contig1611.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A2N9I1D1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I1D1_FAGSY)

HSP 1 Score: 234 bits (596), Expect = 8.410e-70
Identity = 130/229 (56.77%), Postives = 152/229 (66.38%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTP 630
            PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSPMF+LLKPTFSL LRP PL+  L  K ERSPTD  +    SA+ L PFIFGA  LDH +LGALAGD GCFPLD+ AYPP S+W       L  ++VFRVC+DLVP  +PAPKQCFTP
Sbjct:  262 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTP 484
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A2N9G3L9_FAGSY (Uncharacterized protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=A0A2N9G3L9_FAGSY)

HSP 1 Score: 234 bits (596), Expect = 1.230e-67
Identity = 130/229 (56.77%), Postives = 152/229 (66.38%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTP 630
            PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSPMF+LLKPTFSL LRP PL+  L  K ERSPTD  +    SA+ L PFIFGA  LDH +LGALAGD GCFPLD+ AYPP S+W       L  ++VFRVC+DLVP  +PAPKQCFTP
Sbjct:  263 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTP 485
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A2N9FRF2_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FRF2_FAGSY)

HSP 1 Score: 234 bits (596), Expect = 2.920e-67
Identity = 130/229 (56.77%), Postives = 152/229 (66.38%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTP 630
            PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSPMF+LLKPTFSL LRP PL+  L  K ERSPTD  +    SA+ L PFIFGA  LDH +LGALAGD GCFPLD+ AYPP S+W       L  ++VFRVC+DLVP  +PAPKQCFTP
Sbjct:  262 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTP 484
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A2N9H1D9_FAGSY (Uncharacterized protein n=10 Tax=Magnoliopsida TaxID=3398 RepID=A0A2N9H1D9_FAGSY)

HSP 1 Score: 234 bits (596), Expect = 3.770e-67
Identity = 130/229 (56.77%), Postives = 152/229 (66.38%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTP 630
            PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSPMF+LLKPTFSL LRP PL+  L  K ERSPTD  +    SA+ L PFIFGA  LDH +LGALAGD GCFPLD+ AYPP S+W       L  ++VFRVC+DLVP  +PAPKQCFTP
Sbjct:  262 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTP 484
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A8J5FAK3_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FAK3_ZINOF)

HSP 1 Score: 179 bits (453), Expect = 6.540e-50
Identity = 109/225 (48.44%), Postives = 131/225 (58.22%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-LVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYWLAV---------HVVFRVCIDLVPNYQPAPKQCFTP 630
            PLLPKL+GYFAEFLRES LAP GILY PT VG  YRY  +    +F     +G   +      TL R  +S  S    ++    LT+PP T+L EE LGF+GIGFSPMF+LLKPTFSL LRPH                    ++  AN L        L    +LGALAGD GCFPLD+ AYPP S+W  +         ++VFRVC+DLVP  +PAPKQCFTP
Sbjct:  102 PLLPKLRGYFAEFLRESCLAPLGILYLPTSVGFGYRYPFVEGRSSFSWEYGMGYFRAVAPRTRTLARGISSTPSYPEKARSPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPH--------------------LLARANLLAVSAPLPPLSLSGHLGALAGDPGCFPLDDEAYPPSSHWPTLIPLIFFGGSYLVFRVCLDLVPLSRPAPKQCFTP 306
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A6A5L147_LUPAL (Uncharacterized protein n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L147_LUPAL)

HSP 1 Score: 160 bits (406), Expect = 2.230e-44
Identity = 103/222 (46.40%), Postives = 120/222 (54.05%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYWLAVHVVFRVCIDLVPNYQPAPKQCFTP 630
            PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSP F+LLKPTFSL LRP  L   L  K ERSPTD  +    SA+ L PFIFGA  LD                                  +VC+DLV   +PAPKQCFTP
Sbjct:  108 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPTFALLKPTFSLPLRPPLLARVLPSKAERSPTDKFLHPTASADRLAPFIFGARALD----------------------------------QVCLDLVSLSRPAPKQCFTP 289
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A7N2MPG6_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2MPG6_QUELO)

HSP 1 Score: 149 bits (376), Expect = 4.540e-41
Identity = 90/168 (53.57%), Postives = 105/168 (62.50%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLD 468
            PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSPMF+LLKPTFSL LRP  L+  L  K ERSPTD  +    SA+ L PFIFGA  LD
Sbjct:   68 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPLLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALD 229
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A8J5HKZ7_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HKZ7_ZINOF)

HSP 1 Score: 145 bits (366), Expect = 1.780e-39
Identity = 89/168 (52.98%), Postives = 102/168 (60.71%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLD 468
            PLLPKL+GYFAEFLRES LAP GILY PT VG  Y Y  +    +F     +G   +      TL      AQ I ST  +         LT+PP T+L EE LGF+GIGFSPMF+LLKPTFSL LRPH L   L+ K ERSPTD  +    SA+ L PFIFGA  LD
Sbjct:   76 PLLPKLRGYFAEFLRESCLAPLGILYLPTSVGFGYMYPFVEGRSSFSWEYGMGYFRTVAPRTRTL------AQGISSTPSYPEKARSPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPHLLARVLRSKAERSPTDAFLHPTASADRLAPFIFGARALD 237
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A6A5LC74_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LC74_LUPAL)

HSP 1 Score: 150 bits (379), Expect = 2.270e-38
Identity = 102/237 (43.04%), Postives = 118/237 (49.79%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAFLGSITSTTSIMHTLFRIHNSAQSIFSTSQHLVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYWLAVHVVFRVCIDLVPNYQPAPKQCFTPTL*H*PLRLNTFRGEPASSEFDWHFTP 711
            PLLP L+GYFAEFLRES LAP GILY PTCVG  Y Y  +    +F    +                   FS +    LT+P  T+L EE LGF+GIGFSP F+LLKPTFSL L P      L  K ERSPTD  +    SA+ L PFIFGA  LDH         +   P            L + +  R  I L P Y  +   C           LN FRGEPASS  +WHFTP
Sbjct:   85 PLLPNLRGYFAEFLRESCLAPLGILYLPTCVGFGYMYPFVEGRSSFSWEYS----------------MGYFSAA----LTHPSWTNLAEEPLGFRGIGFSPTFALLKPTFSLPLHPPLHARVLPSKVERSPTDKFLHPTASADRLAPFIFGAKALDH---------IQSLPR-----------LGIALTARTEIVLYP-YMSSQLLC-----------LNAFRGEPASSGLEWHFTP 269
[Close]
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Match: A0A8J5GZ70_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GZ70_ZINOF)

HSP 1 Score: 145 bits (366), Expect = 1.140e-36
Identity = 87/162 (53.70%), Postives = 102/162 (62.96%), Query Frame = 1 
Query:    1 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-LVLTYPPRTSLPEETLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLD 468
            PLLPKL+GYFAEFLRES LAP GILY PT VG  YRY  +    +F     +G   +      TL R  +S  S    ++    LT+PP T+L EE LGF+GIGFSPMF+LLKPTFSL LRPH L   L+ K ERSPTD  +    SA+ L PFIF A  LD
Sbjct:  355 PLLPKLRGYFAEFLRESCLAPLGILYLPTSVGFGYRYPFVEGRSSFSWEYGMGYFRAVAPRTRTLARGISSTPSYPEKARSPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPHLLARVLRSKAERSPTDAFLHPTASADRLAPFIFSARALD 516
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1611.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9I1D1_FAGSY8.410e-7056.77Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9G3L9_FAGSY1.230e-6756.77Uncharacterized protein n=2 Tax=Magnoliopsida TaxI... [more]
A0A2N9FRF2_FAGSY2.920e-6756.77Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A2N9H1D9_FAGSY3.770e-6756.77Uncharacterized protein n=10 Tax=Magnoliopsida Tax... [more]
A0A8J5FAK3_ZINOF6.540e-5048.44Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A6A5L147_LUPAL2.230e-4446.40Uncharacterized protein n=2 Tax=Lupinus albus TaxI... [more]
A0A7N2MPG6_QUELO4.540e-4153.57Uncharacterized protein n=1 Tax=Quercus lobata Tax... [more]
A0A8J5HKZ7_ZINOF1.780e-3952.98Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A6A5LC74_LUPAL2.270e-3843.04Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A8J5GZ70_ZINOF1.140e-3653.70Uncharacterized protein n=1 Tax=Zingiber officinal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1611contigP-littoralis_Contig1611:6920..7859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4155.Migut.D01396.1.p
Model size712
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.37e-12
EggNOG OGs2D3FT@1|root,2SREA@2759|Eukaryota,380NY@33090|Viridiplantae,3GQ9H@35493|Streptophyta
Cds size420
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1611.8.1prot_P-littoralis_Contig1611.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1611 7092..7739 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.9095914-UTR-P-littoralis_Contig1611:6919..70911680789779.9095914-UTR-P-littoralis_Contig1611:6919..7091Pylaiella littoralis U1_48UTRP-littoralis_Contig1611 6920..7091 -
1680789780.0391977-UTR-P-littoralis_Contig1611:7739..78591680789780.0391977-UTR-P-littoralis_Contig1611:7739..7859Pylaiella littoralis U1_48UTRP-littoralis_Contig1611 7740..7859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789780.000124-CDS-P-littoralis_Contig1611:7091..71611680789780.000124-CDS-P-littoralis_Contig1611:7091..7161Pylaiella littoralis U1_48CDSP-littoralis_Contig1611 7092..7161 -
1680789780.0113945-CDS-P-littoralis_Contig1611:7248..73001680789780.0113945-CDS-P-littoralis_Contig1611:7248..7300Pylaiella littoralis U1_48CDSP-littoralis_Contig1611 7249..7300 -
1680789780.022474-CDS-P-littoralis_Contig1611:7317..75041680789780.022474-CDS-P-littoralis_Contig1611:7317..7504Pylaiella littoralis U1_48CDSP-littoralis_Contig1611 7318..7504 -
1680789780.030998-CDS-P-littoralis_Contig1611:7628..77391680789780.030998-CDS-P-littoralis_Contig1611:7628..7739Pylaiella littoralis U1_48CDSP-littoralis_Contig1611 7629..7739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1611.8.1

>prot_P-littoralis_Contig1611.8.1 ID=prot_P-littoralis_Contig1611.8.1|Name=mRNA_P-littoralis_Contig1611.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MTVQAFLGSITSTTSIMHTLFRIHNSAQSIFSTSQHLVLTYPPRTSLPEE
TLGFQGIGFSPMFSLLKPTFSLLLRPHPLTLTLQPKTERSPTDYLIIIIT
SANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*
back to top

mRNA from alignment at P-littoralis_Contig1611:6920..7859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1611.8.1 ID=mRNA_P-littoralis_Contig1611.8.1|Name=mRNA_P-littoralis_Contig1611.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=940bp|location=Sequence derived from alignment at P-littoralis_Contig1611:6920..7859- (Pylaiella littoralis U1_48)
CCCCTTCTCCCGAAGTTACAGGGTTATTTTGCCGAGTTCCTTAGAGAGAG
TTATCTCGCGCCCTTTGGTATACTCTACCAACCCACCTGTGTCGGTTTAG
AGTACAGGTATTCTTTACTTATGACAGTGCAAGCTTTTCTTGGAAGCATA
ACATCAACTACTTCAATAATGCACACATTATTCCGTATTCATAACTCAGC
TCAAAGTATTTTCTCTACTTCTCAACACCTCGTATACTTAAACCAATAAC
CAGTATTTGGCTAGTTTAGCTGTCTTCGTCCCTCGTTGTCAATAAAGAAT
AGTATAGGAATATTAACCCATTGTCCATCGACTACGCTTTTCAGCCTCGC
CTTAGGTCCTGACTTACCCCCCGCGGACGAGCCTTCCGGAGGAAACCTTA
GGTTTTCAGGGCATCGGATTCTCACCCATGTTTTCGCTACTCAAGCCGAC
ATTCTCACTTCTGCTTCGTCCACACCCGCTTACGCTAACGCTTCAACCTA
AAACAGAACGCTCCCCTACCGATTATCTAATTATTATTATTAGTTTTTTA
ATCTCACAGCTTCGGCAAATTACTTAGTCCCGTTCATTTTCGGCGCAGGA
TTACTCGACCAGTGAGCTATTACGCACTCTTTAAAGGATTGCTGCTTCTA
AGCAAACCTTCTGGTTGTTTAAGTCTTCCCACCTCCTTTGCCACTTAGTA
ATTATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTTGACAAT
GGAGCTTATCCCCCATAGTCTTACTGGTTAGCTGTACATGTAGTATTCAG
AGTTTGCATCGATTTGGTACCGAATTACCAGCCCGCACCGAAGCAGTGCT
TTACCCCTACATTATAACACTAACCGCTGCGCCTAAACACATTTCGGGGA
GAACCAGCTAGCTCCGAATTCGATTGGCATTTCACCCCTA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1611:6920..7859-

>mRNA_P-littoralis_Contig1611.8.1 ID=mRNA_P-littoralis_Contig1611.8.1|Name=mRNA_P-littoralis_Contig1611.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1611:6920..7859- (Pylaiella littoralis U1_48)
ATGACAGTGCAAGCTTTTCTTGGAAGCATAACATCAACTACTTCAATAAT
GCACACATTATTCCGTATTCATAACTCAGCTCAAAGTATTTTCTCTACTT
CTCAACACCTCGTCCTGACTTACCCCCCGCGGACGAGCCTTCCGGAGGAA
ACCTTAGGTTTTCAGGGCATCGGATTCTCACCCATGTTTTCGCTACTCAA
GCCGACATTCTCACTTCTGCTTCGTCCACACCCGCTTACGCTAACGCTTC
AACCTAAAACAGAACGCTCCCCTACCGATTATCTAATTATTATTATTACT
TCGGCAAATTACTTAGTCCCGTTCATTTTCGGCGCAGGATTACTCGACCA
TAATTATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTTGACA
ATGGAGCTTATCCCCCATAG
back to top