mRNA_P-littoralis_Contig1611.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A6G6D7D1_ECTSI (Cytochrome c biogenesis protein CcsA n=7 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7D1_ECTSI) HSP 1 Score: 278 bits (712), Expect = 4.160e-91 Identity = 144/169 (85.21%), Postives = 160/169 (94.67%), Query Frame = 1
Query: 1 MSIISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
MSI+SE+I+ ++NS+FISCF+CT YWSIIS+RDT++ R IAKITSRFATLS+F LL DRW+EFGYFPLSNLYESLLFLSCLLLFVYQVLEYKI+SPVFGGIILPIVLFIT FAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLL++GSSLAILYLVV LE+E
Sbjct: 1 MSIVSENISLVSNSVFISCFVCTSAYWSIISMRDTKILRDIAKITSRFATLSLFVLLADRWIEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIQSPVFGGIILPIVLFITAFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLMVGSSLAILYLVVFLEFE 169
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A6B7IK16_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7IK16_9PHAE) HSP 1 Score: 273 bits (699), Expect = 3.890e-89 Identity = 143/169 (84.62%), Postives = 156/169 (92.31%), Query Frame = 1
Query: 1 MSIISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
MSIISEHIN +NSIF+SCF TL YW+I+S++D+ + R I KITSRFATLSIF LL DRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKI++PVFGGIILPIVLFIT FAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLI+GSSLAILYLV+ LE+E
Sbjct: 1 MSIISEHINLFSNSIFVSCFFSTLAYWTILSMKDSNILRTIGKITSRFATLSIFILLTDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIQTPVFGGIILPIVLFITAFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIVGSSLAILYLVLFLEFE 169
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A1I9LVC5_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVC5_9PHAE) HSP 1 Score: 270 bits (691), Expect = 6.340e-88 Identity = 137/169 (81.07%), Postives = 156/169 (92.31%), Query Frame = 1
Query: 1 MSIISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
MS++SE++N +NNS+F+SCFLCTL YWSII ++DT++ R IAK+TSRFAT+SIF LL DRW+EFGYFPLSNLYESLLFL+CLLLFVYQVLEYKI+SP+FGGIILPIVLFIT F +F LPL MQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLV LE+E
Sbjct: 1 MSLVSENLNLVNNSVFVSCFLCTLAYWSIIYMKDTQILRTIAKLTSRFATVSIFILLTDRWIEFGYFPLSNLYESLLFLACLLLFVYQVLEYKIQSPIFGGIILPIVLFITAFTIFNLPLAMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVGFLEFE 169
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A516ICR2_9PHAE (Cytochrome c biogenesis protein CcsA n=27 Tax=Laminariales TaxID=2886 RepID=A0A516ICR2_9PHAE) HSP 1 Score: 205 bits (521), Expect = 3.530e-62 Identity = 108/161 (67.08%), Postives = 130/161 (80.75%), Query Frame = 1
Query: 25 NWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
N NN +F C + T+ YW + ++ ++F +AKITSRFATLS+F L++RW++FGYFPLSNLYESLLFLSC+LLFV Q LE K +S +FG II+PIVLFITGFA LPLEMQKASALVPALQSNWLMMHVSLMMLSY++LIIGSS AI+Y+ LE E
Sbjct: 14 NIFNNILFACCLVSTIFYWFSLGFKNIKVFSTLAKITSRFATLSLFVFLLNRWIQFGYFPLSNLYESLLFLSCILLFVSQALESKTQSLLFGCIIVPIVLFITGFAALTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILIIGSSFAIVYVGSFLELE 174
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A8F0F9V5_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9V5_9PHAE) HSP 1 Score: 205 bits (521), Expect = 3.530e-62 Identity = 104/158 (65.82%), Postives = 131/158 (82.91%), Query Frame = 1
Query: 34 NNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
NN +FISC + T+ YW + ++ ++F +AK+TSRFA+L +F L +RW+E GYFPLSNLYESLLFLSC+LLFVYQ+LEYK +S +FG II+PIVLFITGFA LPLEMQKA+ALVPALQSNWLMMHVSLMMLSY++LI+GS+ +I+Y+ LE E
Sbjct: 17 NNILFISCLVSTVFYWFSLGFKNIKIFGSLAKVTSRFASLILFVFLSNRWLESGYFPLSNLYESLLFLSCILLFVYQILEYKTQSSLFGCIIVPIVLFITGFAALTLPLEMQKANALVPALQSNWLMMHVSLMMLSYAILIMGSAFSIVYVGAFLELE 174
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A2R4QPY5_9PHAE (Cytochrome c biogenesis protein CcsA n=4 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY5_9PHAE) HSP 1 Score: 203 bits (517), Expect = 2.150e-61 Identity = 104/158 (65.82%), Postives = 129/158 (81.65%), Query Frame = 1
Query: 16 EHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLV 489
+ N +NNS+FI F+ T YW +S + +F I KITSRFATLSIF L+ RW+++GYFPLSNLYESLLFLS +LLF+YQ LE K +SP+FGGI+LP+VL I+GF+ LPLEMQKASALVPALQSNWLMMHVSLMMLSY++L+IGS+ +I+YLV
Sbjct: 5 NYCNLLNNSLFILVFISTALYWFRLSFKSITIFNTIGKITSRFATLSIFLFLLIRWIDYGYFPLSNLYESLLFLSFILLFLYQFLESKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLV 162
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A1L2F1W2_9PHAE (Cytochrome c biogenesis protein CcsA n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1W2_9PHAE) HSP 1 Score: 199 bits (505), Expect = 1.370e-59 Identity = 104/165 (63.03%), Postives = 129/165 (78.18%), Query Frame = 1
Query: 16 EHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYEF 510
+ N +NN +F F+ T YW +S + +F I +ITSRFAT++IF L+ RWVE+GYFPLSNLYESLLFLS +LLF YQ LE K +SP+FGGIILPIVL I+GFA LPLEMQKA ALVPALQSNWLMMHVSLMMLSY++L+IGS+ +I+YLV +L + +
Sbjct: 5 NYFNLLNNILFFLVFISTAIYWFRLSFKFVTIFNIIGEITSRFATINIFLFLLIRWVEYGYFPLSNLYESLLFLSFILLFSYQFLESKAKSPIFGGIILPIVLLISGFAELTLPLEMQKAGALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTLLVFSY 169
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A8F0FAP1_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP1_9PHAE) HSP 1 Score: 191 bits (486), Expect = 5.990e-57 Identity = 96/162 (59.26%), Postives = 126/162 (77.78%), Query Frame = 1
Query: 16 EHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILE 501
+ N+ +NSIFI + T+ YW + + + AK+ SR AT+ +F L+ RW++ GYFPLSNLYESLLFLSC++LFVYQ +EYK +S +FG I+LP+VLFITGFA LPLEM+KASALVPALQSNWLMMHVSLMMLSY++LI+GS ++IL+L++ L
Sbjct: 5 NYCNFFSNSIFIFLLISTVFYWFSLRFTKVDFYYKFAKLNSRVATIILFVFLLSRWIQNGYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFLIIFLS 166
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A8F0F862_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F862_9PHAE) HSP 1 Score: 180 bits (457), Expect = 1.510e-52 Identity = 94/161 (58.39%), Postives = 120/161 (74.53%), Query Frame = 1
Query: 16 EHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVIL 498
+ N NS+FI F+ ++ YW + I ++ +AK T+R A LS+F L RW +GYFPLSNLYESLLFL+CLL V+Q+LEY+ +S FG IILPI+LFIT FA LPLEMQKASALVPALQSNWLMMHVSLMMLSY++L++GS +I++L+ L
Sbjct: 5 NYFNIFKNSLFICLFISSIFYWVSLRITKFKMLYTVAKFTARIANLSLFIFLATRWGNYGYFPLSNLYESLLFLACLLSLVHQILEYQTQSKFFGTIILPIILFITSFADLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLLGSLFSIIFLITFL 165
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Match: A0A2I4Q2E4_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E4_9PHAE) HSP 1 Score: 174 bits (441), Expect = 2.340e-50 Identity = 88/167 (52.69%), Postives = 122/167 (73.05%), Query Frame = 1
Query: 7 IISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATLSIFSLLIDRWVEFGYFPLSNLYESLLFLSCLLLFVYQVLEYKIESPVFGGIILPIVLFITGFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVVILEYE 507
I+ ++ N +F F T+ YW + + + A+I S FAT +F L++RWV +GYFP+SNLYESLLFLSCLLL ++Q+LEY+ +S +FG ++LP +LFIT FA LPLEMQKA+ALVP+LQSNWLMMHVSLM+LSY++L++GS +I++LV+ L E
Sbjct: 2 IMDDYFTGFKNILFFCLFSSTIFYWFSLKFQILKKLHDFARINSIFATFLLFFFLLNRWVTYGYFPISNLYESLLFLSCLLLIIHQILEYQTQSRIFGALLLPSILFITSFADLTLPLEMQKATALVPSLQSNWLMMHVSLMLLSYAILLLGSLFSIIFLVLFLPSE 168 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1611.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1611.4.1 >prot_P-littoralis_Contig1611.4.1 ID=prot_P-littoralis_Contig1611.4.1|Name=mRNA_P-littoralis_Contig1611.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp MSIISEHINWINNSIFISCFLCTLTYWSIISIRDTELFRGIAKITSRFATback to top mRNA from alignment at P-littoralis_Contig1611:4262..4871- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1611.4.1 ID=mRNA_P-littoralis_Contig1611.4.1|Name=mRNA_P-littoralis_Contig1611.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=610bp|location=Sequence derived from alignment at P-littoralis_Contig1611:4262..4871- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1611:4262..4871- >mRNA_P-littoralis_Contig1611.4.1 ID=mRNA_P-littoralis_Contig1611.4.1|Name=mRNA_P-littoralis_Contig1611.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig1611:4262..4871- (Pylaiella littoralis U1_48)back to top |