mRNA_P-littoralis_Contig161.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig161.79.1
Unique NamemRNA_P-littoralis_Contig161.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig161contigP-littoralis_Contig161:340700..344880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1251
Hectar predicted targeting categoryother localisation
Exons4
Cds size1041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig161.79.1prot_P-littoralis_Contig161.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig161 341954..344810 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.1901488-UTR-P-littoralis_Contig161:340699..3407791680789779.1901488-UTR-P-littoralis_Contig161:340699..340779Pylaiella littoralis U1_48UTRP-littoralis_Contig161 340700..340779 +
1680789779.2012815-UTR-P-littoralis_Contig161:341893..3419531680789779.2012815-UTR-P-littoralis_Contig161:341893..341953Pylaiella littoralis U1_48UTRP-littoralis_Contig161 341894..341953 +
1680789779.257025-UTR-P-littoralis_Contig161:344810..3448801680789779.257025-UTR-P-littoralis_Contig161:344810..344880Pylaiella littoralis U1_48UTRP-littoralis_Contig161 344811..344880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.2149734-CDS-P-littoralis_Contig161:341953..3419801680789779.2149734-CDS-P-littoralis_Contig161:341953..341980Pylaiella littoralis U1_48CDSP-littoralis_Contig161 341954..341980 +
1680789779.2325456-CDS-P-littoralis_Contig161:343459..3442871680789779.2325456-CDS-P-littoralis_Contig161:343459..344287Pylaiella littoralis U1_48CDSP-littoralis_Contig161 343460..344287 +
1680789779.2432697-CDS-P-littoralis_Contig161:344624..3448101680789779.2432697-CDS-P-littoralis_Contig161:344624..344810Pylaiella littoralis U1_48CDSP-littoralis_Contig161 344625..344810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig161.79.1

>prot_P-littoralis_Contig161.79.1 ID=prot_P-littoralis_Contig161.79.1|Name=mRNA_P-littoralis_Contig161.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=347bp
MEQHSNGRAVDHSYLLRLSETGSITTYDTIHYGANSVMVADVSVAGMVDK
DGIKVIDAPRPTSISDDSNNNNGSSTGTSIGMDGTSSSDSTSGNISHSIG
MGSTTDNIDSSTSSIGSNKKIFTLDSSSSSNRLGAGGTSRRKWIDRSHSD
RTAAGGTDPLRVGEDRIAPIRSLDGQSIWTGNDGSIIHFMLPDANAPSPS
DDGGAIGARAMQQVRRVVSSDSRRLEDVLRTRSTVKKAGERGVSLKDAAP
GGFWSLGARRRLRKMETAAESMYQRVMSIDERGAITVTIDGAPVLTNSGP
HKSEWRNKFPFRRARSQSYEMHPTEDGFEVTLEGRVIWGVQAADIM*
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mRNA from alignment at P-littoralis_Contig161:340700..344880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig161.79.1 ID=mRNA_P-littoralis_Contig161.79.1|Name=mRNA_P-littoralis_Contig161.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4181bp|location=Sequence derived from alignment at P-littoralis_Contig161:340700..344880+ (Pylaiella littoralis U1_48)
CCAACATCCACTTCGTCGTGGAAAAGGGGGTATCCCTGACCATATCGACG
CGGGGATGCATCGTTTTCGAGCGCGACGAGGTGAGCAGTTTTTGCAACGC
TCCGGGTGTACTGTATATCGTATAACAGCTACGGCAGCAGTAATAGCGAG
CGGGAGGGGCGTTTGCTGCTGCTGCTGCTGCTGCTTCTTTCTCTTTATTT
ACACGAGCAGAAACTAGCTTTCGCACAGCAGTAAGCATACAGTAGTTATT
GTGTGCATGTATGTGTCATGTGTCGTGCGATGTACAAGCTGGTACCGTGT
TTTACTTGTGCGTGTGCATTTCATCTGTATGAATCCCAGGACGTTTGTGT
GTTTCAGCCTGTCACACAACACACACGCAGACTACGGAGTACTGCTGTCA
CACGGTCGTTACCGATGTGGAGGGGGCACACGGATAGCAGACACAGACAT
ACCCTATAATAATAACGATCCACGGTGCGGTACTGGTGCTCGTGTCTAGT
GTCTAGTGCTCTGCGATCGAACATTGACTTGCAAGCATGACACCAGCAAC
GACAGTACAAACAACGCAAGAGCAGTAGCAGAAGCAACAGCACGCTTGCT
ACCCGGAAAGAGTGAGTGGACATCACTACTCACCACGTCGTGCTCAAAAA
CCGCGCATCCGTTCTTGGCGATCGTAAGAGATGCACCTCTTCTTCCACGA
GGAAGATGTGAACGTTTTTTCCCAAGACCGATGCGTGCGACCTCAGGATG
ACGTTGCTCTTGACGTAGAGCACCTGCGAGGTGCTGCGCGTCAACAACAA
CGTGGTCCTGAGTTCCCATGCACCAATCTTGGGAAGGGACGTCCACTTCC
TCGTGGGAGAAGGTATTAACTCTTACGATCGCCACGCGAGGATGTATTGT
TTTGGAGCTCAACGAGGGGAGCAGTTTTGCCACCCTCTCCAGGCAGGTAC
TGCTCTTTCTGCTGCAGCGAGCGGGGTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGTTGACAAGGAGAGCTTCCAACCATTAAGGAGTG
TTGTGATGTCAGCATGATGTGGATACAGGTATGCATGGCAGCTGCAGTAC
TATACTGTGCATTGCATCGTATACCCGTGGCATCATACCTGCTTCTCATG
TGTCTCGGGCGACCCTTGCTGTATGTGCGCATCATACCACGCAGGACACC
ACGTTTCCGTTGTTTCAAGTGAAGGGCAAGCTCATACTCGACGCCGGCGG
ATGGATGGAGCAACACTCAAATGGCCGTGCGGTGAGGCTGTTCAGAAACC
ATTAACCCTTTGACCCCCCAGGGATCTGAAAAAAATAATCGTGGACCCAA
AAATTAACTGATTCCGGTGCGCCGATGATTGGCGAATGGTGGACAGTCTC
AAAAAAAAAAAGGGACTGACGTCTCGCTGGCTCTGTCCGGTGAAAAAAGG
GTGTGACTTGGTTATACACGGAAATCTGTCCCCAATTTGCCCTGAAAAAA
ATGGGGACATATTTCAGTCTAAAGCTACACAAACCTTTTTGGGTCAACTA
CACAAAAGTTTTGTTTGTTGAGTTTTACAGGATGTTTTCTTCAAAGGGAT
ACTGCTGTATGCAAGGTGGCACGCAGCAACACCGCCATTAGCATGGCAGA
TCAGGGTACCCCGCTCGACAACCACACAGCAGTAGGGTTCCACTCCGCAA
GGTTGTACCCGCGCACGACACTCAATCAGGGTCTACAGCATCTTATCAGC
AGCAGCAAGCAGCAGCTGCACTGTGCAGCTGCTGCTACTACTGAATGAAG
TCAAACATATCATCGTATGTTGCATGTATGTGATCAACGCAAGGGTGTCG
GCATGTATTGGTACCCATGTGATGATACTCGTACGAGATCGCCGGGTATG
TTTGTGAGCTTCCAAACCTGCGTGGCGCGATGTGTCTGTTTGTAGTGTCT
CGTGTGCGTAGTGTGTGTCTCACCAACCCATCGCACGACACATAATCAGC
TAGCTGCTTGCTGCAGCATGCACAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGTACAATAATAGTTGCAGAAATCAGGGTAGGTGAGTG
CAGCAGTACGTCAGCATCAGCGTTTCATATGAGCGGTAGTCTAACATATA
GTCTACTCCGAGTATGTATCATGTCTCATTATGTATGTGTGCAAGTTGTG
TGCAATGCAGGGAGGGTTGCCGGCATGAAGTGTGACACAACAAGACGATC
GCCGTTGGGTCTACCATGCTGTCGAGGGAAGAGAAAAACACACAACAAAC
CTAACGGCCGGGCGCTCTTGGTCTCCCATGATAAAAAAAAAGTGTGGCAC
GGAGGCAGCCAACTATTGGTCGATCCACACACATTCCATCGAGCTCACGG
AACCACACCCAAAATACCTGTATAAAGGCGCCTTCAAAACCCAAGTAAAA
AGAAAAGAAGGTGTCCCCAAATTGTCCCCAATTGCGATTGGGGGGTTCAA
AGGGTTAAATAATTGAACATCACGCAGCCGTCAACAAATAATATCTCGAG
ACTCAACAGCACATCACGGATCCTCGGATTGAACGTCGCTCTGCCATCCC
ACGCGACCTCTAGTGAGAACGACTGAAACACTGCTGTATCGATGTAGCCA
GCGCACACCTCAACTGACACACCCCCCACCTCCCCCGTATTCACACTTGC
CATGTACTGTACACGCAAACACGGACCCCACCGAAAACGGTGGACGGTGG
ACGGACGCAGGTCGACCACTCCTATTTGCTCCGGCTTTCCGAGACAGGAT
CAATCACCACCTATGACACCATCCACTACGGTGCGAATTCTGTCATGGTA
GCCGACGTTTCTGTAGCGGGTATGGTCGACAAGGACGGCATCAAAGTCAT
CGACGCCCCCCGCCCGACGTCTATCAGCGACGACAGCAACAACAACAACG
GCAGCAGCACCGGCACCAGCATTGGCATGGACGGCACCAGTTCCAGCGAC
AGCACCAGCGGCAACATCAGTCACAGCATCGGCATGGGCAGTACCACCGA
TAACATCGACAGCAGCACCAGCAGCATCGGCAGCAACAAGAAAATCTTCA
CTCTCGACAGTAGCAGCAGCAGCAACCGCTTGGGCGCCGGAGGTACTAGC
CGGCGAAAGTGGATCGATCGTTCTCACTCCGACCGGACCGCGGCTGGAGG
TACCGATCCTCTCCGCGTCGGCGAAGACCGCATTGCCCCGATCAGATCCC
TCGACGGCCAATCGATTTGGACGGGCAATGACGGCTCGATCATCCACTTC
ATGCTGCCCGACGCTAATGCTCCCTCTCCCAGCGATGACGGCGGCGCTAT
CGGTGCCCGTGCGATGCAGCAGGTCCGCCGTGTTGTTTCCTCCGACTCCC
GCCGGCTCGAGGACGTCCTGCGTACTCGCTCAACCGTCAAAAAGGCGGGT
GAGAGAGGCGTTTCGCTTAAGGACGCCGCTCCGGGAGGATTTTGGTCGCT
GGGGGCGAGGAGGCGCCTGAGGAAGATGGAGACAGCGGCTGAAAGCATGT
ACCAGAGGGTGATGAGCATCGACGAGAGAGGAGCGATCGTGAGTTGGGAT
GCCATGTTTTTGTTTATAAAAACGCCACAATAGTAATATCGTTTCGGCTG
TTGTTATCCACTTTTTCGCCGCCGAGCTGACGGTAAAGCAAAAGTTGTTC
TTCTGTAACCCCGAGACGTGGGACTCTAACCAGGGAACGATTGCAAGTAC
ACTGCACAATCTACCATCTCCGTTGTTGGTACCGTTCAAAAGTGGGGGCA
CATATGTTTGAATGCTCGTGGTTTGAACTCTCTTTGCTATTGTCCATCCC
CGCACGACCCACCTAACAGTCACTTCTCGTTTACACTTGTCACATGACGC
CACTCCCACAACGAATTTTGTGCAGACGGTCACCATCGACGGAGCGCCAG
TTCTCACCAATTCCGGTCCTCACAAGAGCGAATGGCGGAACAAGTTCCCC
TTCCGCCGAGCACGGAGCCAGTCGTACGAGATGCATCCTACCGAGGATGG
CTTTGAGGTCACCCTCGAGGGGCGGGTGATATGGGGAGTGCAAGCGGCTG
ATATTATGTGAACTACTGCTGCTGCTGTTGTAGCGACATTTTGCCTCGAG
TCGTGACTGACCCTGTCGCTTGTTCTCGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig161:340700..344880+

>mRNA_P-littoralis_Contig161.79.1 ID=mRNA_P-littoralis_Contig161.79.1|Name=mRNA_P-littoralis_Contig161.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1041bp|location=Sequence derived from alignment at P-littoralis_Contig161:340700..344880+ (Pylaiella littoralis U1_48)
ATGGAGCAACACTCAAATGGCCGTGCGGTCGACCACTCCTATTTGCTCCG
GCTTTCCGAGACAGGATCAATCACCACCTATGACACCATCCACTACGGTG
CGAATTCTGTCATGGTAGCCGACGTTTCTGTAGCGGGTATGGTCGACAAG
GACGGCATCAAAGTCATCGACGCCCCCCGCCCGACGTCTATCAGCGACGA
CAGCAACAACAACAACGGCAGCAGCACCGGCACCAGCATTGGCATGGACG
GCACCAGTTCCAGCGACAGCACCAGCGGCAACATCAGTCACAGCATCGGC
ATGGGCAGTACCACCGATAACATCGACAGCAGCACCAGCAGCATCGGCAG
CAACAAGAAAATCTTCACTCTCGACAGTAGCAGCAGCAGCAACCGCTTGG
GCGCCGGAGGTACTAGCCGGCGAAAGTGGATCGATCGTTCTCACTCCGAC
CGGACCGCGGCTGGAGGTACCGATCCTCTCCGCGTCGGCGAAGACCGCAT
TGCCCCGATCAGATCCCTCGACGGCCAATCGATTTGGACGGGCAATGACG
GCTCGATCATCCACTTCATGCTGCCCGACGCTAATGCTCCCTCTCCCAGC
GATGACGGCGGCGCTATCGGTGCCCGTGCGATGCAGCAGGTCCGCCGTGT
TGTTTCCTCCGACTCCCGCCGGCTCGAGGACGTCCTGCGTACTCGCTCAA
CCGTCAAAAAGGCGGGTGAGAGAGGCGTTTCGCTTAAGGACGCCGCTCCG
GGAGGATTTTGGTCGCTGGGGGCGAGGAGGCGCCTGAGGAAGATGGAGAC
AGCGGCTGAAAGCATGTACCAGAGGGTGATGAGCATCGACGAGAGAGGAG
CGATCACGGTCACCATCGACGGAGCGCCAGTTCTCACCAATTCCGGTCCT
CACAAGAGCGAATGGCGGAACAAGTTCCCCTTCCGCCGAGCACGGAGCCA
GTCGTACGAGATGCATCCTACCGAGGATGGCTTTGAGGTCACCCTCGAGG
GGCGGGTGATATGGGGAGTGCAAGCGGCTGATATTATGTGA
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